RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781013|ref|YP_003065426.1| phage-associated protein
[Candidatus Liberibacter asiaticus str. psy62]
         (302 letters)



>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
           {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 29.6 bits (66), Expect = 0.32
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 119 HSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKK 175
           H    ++  ++E    +R  Y         +  +E++    + +N+ P    + IKK
Sbjct: 1   HHHHMIEYRIEEAVAKYREFY--EFKPVRESAGIEDVKSAIEHTNLKPFATPDDIKK 55


>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 327

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 74  VYHRFK-YFDSHPIEVIMDLSFRIFPKIANQEIGEIM--ESIWNKYQSHST-EQLQEIVQ 129
           +   F+ Y+ +  +E+  D+  R        E          + ++ S S+ E+L++ + 
Sbjct: 12  IKSFFRNYYLNAELELPKDMELR--------EFALQPFGSDTYVRHLSFSSSEELRDYLV 63

Query: 130 EENKTWRRLY-------DPNDPNTNRTITVE 153
             N     L+        P+  N      + 
Sbjct: 64  NRNLP-LHLFYSSARYQLPSARNMEEKAWMG 93


>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 122

 Score = 25.1 bits (55), Expect = 6.9
 Identities = 5/36 (13%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 98  PKIANQEIGEIMESIWNKYQSHSTEQLQEIVQEENK 133
            ++ + E   +M+ +W++ +  +  Q+ E +     
Sbjct: 3   TRLGDLER-AVMDHLWSRTEPQTVRQVHEALSARRD 37


>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 205

 Score = 25.3 bits (55), Expect = 7.1
 Identities = 7/83 (8%), Positives = 24/83 (28%), Gaps = 3/83 (3%)

Query: 79  KYFDSHPIEVIMDLSF---RIFPKIANQEIGEIMESIWNKYQSHSTEQLQEIVQEENKTW 135
           ++F      ++  +     ++   I +  +   +     +     +  L  +  +    +
Sbjct: 19  RFFHEEIFPLLYPMLLLPSKVRTFIRSGRVYLAVRLKEKETDEAYSYALLNVPTDGLPRF 78

Query: 136 RRLYDPNDPNTNRTITVEEITKM 158
             L             +E+I K 
Sbjct: 79  VELPRLQTDTFYYYSFLEDIIKE 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,139,225
Number of extensions: 53062
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 19
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)