BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str. psy62] (302 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str. psy62] Length = 302 Score = 625 bits (1613), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/302 (100%), Positives = 302/302 (100%) Query: 1 MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHCDVVLQKKKSMLDE 60 MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHCDVVLQKKKSMLDE Sbjct: 1 MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHCDVVLQKKKSMLDE 60 Query: 61 EPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWNKYQSHS 120 EPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWNKYQSHS Sbjct: 61 EPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWNKYQSHS 120 Query: 121 TEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFD 180 TEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFD Sbjct: 121 TEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFD 180 Query: 181 SDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSIQESNIMRFAYSNRSFW 240 SDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSIQESNIMRFAYSNRSFW Sbjct: 181 SDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSIQESNIMRFAYSNRSFW 240 Query: 241 VTIVWITIIVAFLLTQIINSNVFAQLCESKYIATVVSLSAIICGFWAIVGKGLFGVHNDT 300 VTIVWITIIVAFLLTQIINSNVFAQLCESKYIATVVSLSAIICGFWAIVGKGLFGVHNDT Sbjct: 241 VTIVWITIIVAFLLTQIINSNVFAQLCESKYIATVVSLSAIICGFWAIVGKGLFGVHNDT 300 Query: 301 QP 302 QP Sbjct: 301 QP 302 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 23.1 bits (48), Expect = 6.1, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 183 SEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKD 217 SEF + LVK QL +++ EA++Q D Sbjct: 281 SEFCIITDPLVKETARKRSQLIQDYYEARLQYSSD 315 >gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str. psy62] Length = 1828 Score = 22.7 bits (47), Expect = 8.8, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 105 IGEIMESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPN 145 + E +S+ N ++H+T+ + +I EN+ R +D + N Sbjct: 656 LSESQKSLDNSLKAHATDVVHKITNAENQLVNR-FDESSKN 695 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.134 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 190,628 Number of Sequences: 1233 Number of extensions: 7582 Number of successful extensions: 25 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 8 length of query: 302 length of database: 328,796 effective HSP length: 73 effective length of query: 229 effective length of database: 238,787 effective search space: 54682223 effective search space used: 54682223 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)