BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781013|ref|YP_003065426.1| phage-associated protein
[Candidatus Liberibacter asiaticus str. psy62]
         (302 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 302

 Score =  625 bits (1613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/302 (100%), Positives = 302/302 (100%)

Query: 1   MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHCDVVLQKKKSMLDE 60
           MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHCDVVLQKKKSMLDE
Sbjct: 1   MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHCDVVLQKKKSMLDE 60

Query: 61  EPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWNKYQSHS 120
           EPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWNKYQSHS
Sbjct: 61  EPQAWKQGPVFVGVYHRFKYFDSHPIEVIMDLSFRIFPKIANQEIGEIMESIWNKYQSHS 120

Query: 121 TEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFD 180
           TEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFD
Sbjct: 121 TEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFD 180

Query: 181 SDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSIQESNIMRFAYSNRSFW 240
           SDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSIQESNIMRFAYSNRSFW
Sbjct: 181 SDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSIQESNIMRFAYSNRSFW 240

Query: 241 VTIVWITIIVAFLLTQIINSNVFAQLCESKYIATVVSLSAIICGFWAIVGKGLFGVHNDT 300
           VTIVWITIIVAFLLTQIINSNVFAQLCESKYIATVVSLSAIICGFWAIVGKGLFGVHNDT
Sbjct: 241 VTIVWITIIVAFLLTQIINSNVFAQLCESKYIATVVSLSAIICGFWAIVGKGLFGVHNDT 300

Query: 301 QP 302
           QP
Sbjct: 301 QP 302


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 23.1 bits (48), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 183 SEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKD 217
           SEF  +   LVK       QL +++ EA++Q   D
Sbjct: 281 SEFCIITDPLVKETARKRSQLIQDYYEARLQYSSD 315


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 22.7 bits (47), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 105 IGEIMESIWNKYQSHSTEQLQEIVQEENKTWRRLYDPNDPN 145
           + E  +S+ N  ++H+T+ + +I   EN+   R +D +  N
Sbjct: 656 LSESQKSLDNSLKAHATDVVHKITNAENQLVNR-FDESSKN 695


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,628
Number of Sequences: 1233
Number of extensions: 7582
Number of successful extensions: 25
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 8
length of query: 302
length of database: 328,796
effective HSP length: 73
effective length of query: 229
effective length of database: 238,787
effective search space: 54682223
effective search space used: 54682223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)