RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter asiaticus str. psy62] (116 letters) >1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis KOD1} SCOP: a.4.2.1 c.55.7.1 Length = 174 Score = 24.9 bits (54), Expect = 4.0 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 66 WKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYPPPLPSH 115 ++ + +NVKR G+ I YG AL + R +N YP +P H Sbjct: 97 YEWLTKNVKR----GSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCH 142 >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 Score = 24.0 bits (51), Expect = 7.9 Identities = 8/50 (16%), Positives = 11/50 (22%) Query: 27 LEETEKGKKTEITDFMTATSGTVGYASNLCNAKPEICLLWKKIMRNVKRH 76 + KG E T + T N K + C Sbjct: 12 FNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT 61 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.133 0.408 Gapped Lambda K H 0.267 0.0524 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 974,021 Number of extensions: 36144 Number of successful extensions: 45 Number of sequences better than 10.0: 1 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 5 Length of query: 116 Length of database: 5,693,230 Length adjustment: 79 Effective length of query: 37 Effective length of database: 3,777,954 Effective search space: 139784298 Effective search space used: 139784298 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.5 bits)