RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781014|ref|YP_003065427.1| hypothetical protein
CLIBASIA_04580 [Candidatus Liberibacter asiaticus str. psy62]
         (116 letters)



>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair
           protein, suicidal enzyme, hyperthermostability; 1.80A
           {Thermococcus kodakarensis KOD1} SCOP: a.4.2.1 c.55.7.1
          Length = 174

 Score = 24.9 bits (54), Expect = 4.0
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 66  WKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYPPPLPSH 115
           ++ + +NVKR    G+ I YG    AL  + R       +N YP  +P H
Sbjct: 97  YEWLTKNVKR----GSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCH 142


>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
          structural genomics, NPPSFA; NMR {Homo sapiens}
          Length = 104

 Score = 24.0 bits (51), Expect = 7.9
 Identities = 8/50 (16%), Positives = 11/50 (22%)

Query: 27 LEETEKGKKTEITDFMTATSGTVGYASNLCNAKPEICLLWKKIMRNVKRH 76
            +  KG   E T  +  T        N    K + C             
Sbjct: 12 FNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT 61


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 974,021
Number of extensions: 36144
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 116
Length of database: 5,693,230
Length adjustment: 79
Effective length of query: 37
Effective length of database: 3,777,954
Effective search space: 139784298
Effective search space used: 139784298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)