BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781014|ref|YP_003065427.1| hypothetical protein
CLIBASIA_04580 [Candidatus Liberibacter asiaticus str. psy62]
(116 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 116
Score = 241 bits (616), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MFWIAKKFFWISVLLIVLSNVYAQPFLEETEKGKKTEITDFMTATSGTVGYASNLCNAKP 60
MFWIAKKFFWISVLLIVLSNVYAQPFLEETEKGKKTEITDFMTATSGTVGYASNLCNAKP
Sbjct: 1 MFWIAKKFFWISVLLIVLSNVYAQPFLEETEKGKKTEITDFMTATSGTVGYASNLCNAKP 60
Query: 61 EICLLWKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYPPPLPSHH 116
EICLLWKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYPPPLPSHH
Sbjct: 61 EICLLWKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYPPPLPSHH 116
>gi|254780444|ref|YP_003064857.1| bacteriophage repressor protein C1 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 223
Score = 23.5 bits (49), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 65 LWKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNEYP 109
+W+ I R +RH L + + N+ + I +N +P
Sbjct: 9 IWEAIDRMAERHNLTPSGLARKAGLDPTSFNKSKRFGIEGRNRWP 53
>gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 154
Score = 23.1 bits (48), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 77 TLNGAKIVYGFAKSALEKNERESVAIHSKNE 107
TLNG I+ G AK + NE I S+N+
Sbjct: 5 TLNGLSILGGKAKPCDDPNEALLERIPSQNK 35
>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
asiaticus str. psy62]
Length = 556
Score = 21.6 bits (44), Expect = 4.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 80 GAKIVYGFAKSALEKNERESVAI 102
G K++ KSAL +NE E I
Sbjct: 191 GDKVLSSKMKSALARNENERFTI 213
>gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 201
Score = 21.2 bits (43), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 55 LCNAKPEICLLWKKIMRNVK 74
L N K +C WK + R ++
Sbjct: 75 LENPKASLCFHWKSLARQLR 94
>gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 64
Score = 20.8 bits (42), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 8/43 (18%), Positives = 24/43 (55%)
Query: 1 MFWIAKKFFWISVLLIVLSNVYAQPFLEETEKGKKTEITDFMT 43
+FW + + W++++ ++N+Y Q + +K + ++ + T
Sbjct: 2 LFWRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQT 44
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 20.4 bits (41), Expect = 9.0, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 40 DFMTATSGTVGYASNLCNAKP 60
DF+ S +GY S C+ P
Sbjct: 399 DFIEKFSAQIGYLSQHCSLFP 419
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,061
Number of Sequences: 1233
Number of extensions: 2499
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 116
length of database: 328,796
effective HSP length: 63
effective length of query: 53
effective length of database: 251,117
effective search space: 13309201
effective search space used: 13309201
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)