Query gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 10 out of 12
Neff 1.7
Searched_HMMs 33803
Date Wed Jun 1 20:37:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781015.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3hve_A Gigaxonin; ubiquitin, 39.5 6 0.00018 20.8 -0.4 28 20-57 25-52 (52)
2 >2bjq_A MFP2A; motility, nemat 29.5 11 0.00033 19.3 -0.4 12 12-26 44-55 (170)
3 >2bjr_A MFP2B; motility, nemat 28.7 12 0.00035 19.2 -0.4 12 12-26 51-62 (188)
4 >3chb_D Cholera toxin; toxin/r 27.7 30 0.00088 17.0 1.6 26 37-62 33-60 (104)
5 >1ltr_D ETB-R2, heat-labIle en 26.5 32 0.00096 16.8 1.6 26 37-62 32-59 (113)
6 >2bjq_A MFP2A; motility, nemat 26.2 14 0.00041 18.8 -0.4 13 12-27 35-47 (175)
7 >2bjr_A MFP2B; motility, nemat 25.6 14 0.00042 18.7 -0.4 12 12-26 36-47 (180)
8 >1b44_D ETB-POL, protein (B-PO 20.8 48 0.0014 15.9 1.6 27 36-62 31-59 (129)
9 >2gza_A Type IV secretion syst 16.7 90 0.0027 14.4 2.9 41 17-58 84-124 (125)
10 >3bx1_D BASI, alpha-amylase/su 12.7 1.1E+02 0.0034 13.8 1.8 20 41-60 116-135 (181)
No 1
>>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B (A:28-79)
Probab=39.54 E-value=6 Score=20.79 Aligned_cols=28 Identities=36% Similarity=0.511 Sum_probs=19.2
Q ss_pred CCCCEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 87741563087640223217873553571289994167
Q gi|254781015|r 20 HPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVG 57 (78)
Q Consensus 20 hpsp~lrtr~P~a~r~~lg~g~~ve~~~~TTF~IER~g 57 (78)
|-||++||.---. --+++|.|++||-+|
T Consensus 25 ~~sp~irtklnyn----------ppk~dgs~ykieleg 52 (52)
T 3hve_A 25 AASPYIRTKLNYN----------PPKDDGSTYKIELEG 52 (52)
T ss_dssp TTCHHHHHTC---------------------CEEECSS
T ss_pred HCCHHHHHHHHCC----------CCCCCCCCCCCCEEE
T ss_conf 8089999998257----------652113555553031
No 2
>>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} (A:176-345)
Probab=29.51 E-value=11 Score=19.33 Aligned_cols=12 Identities=50% Similarity=1.257 Sum_probs=8.6
Q ss_pred HHHHCCCCCCCCEEE
Q ss_conf 022068988774156
Q gi|254781015|r 12 ALWNQTGKHPSPIFT 26 (78)
Q Consensus 12 alwyq~g~hpsp~lr 26 (78)
||||++|. |++-
T Consensus 44 ALWYkhG~---Pv~G 55 (170)
T 2bjq_A 44 ALWYEHGQ---PVFG 55 (170)
T ss_dssp EEEEETTE---EEEE
T ss_pred EEHHHCCC---CCEE
T ss_conf 11644498---4410
No 3
>>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} (A:181-368)
Probab=28.72 E-value=12 Score=19.21 Aligned_cols=12 Identities=50% Similarity=1.132 Sum_probs=8.1
Q ss_pred HHHHCCCCCCCCEEE
Q ss_conf 022068988774156
Q gi|254781015|r 12 ALWNQTGKHPSPIFT 26 (78)
Q Consensus 12 alwyq~g~hpsp~lr 26 (78)
||||++|. |++-
T Consensus 51 ALWYkhG~---Pv~G 62 (188)
T 2bjr_A 51 ALWYQSGE---PVXG 62 (188)
T ss_dssp EEEEETTE---EEEE
T ss_pred EEHHHCCC---CCEE
T ss_conf 42114388---4310
No 4
>>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} (D:)
Probab=27.73 E-value=30 Score=17.00 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=20.0
Q ss_pred HHCCCCC--CCCCCEEEEEECCCCCCCE
Q ss_conf 2178735--5357128999416765430
Q gi|254781015|r 37 LGSGSEV--SKDKGITFKVEKVGDQHNK 62 (78)
Q Consensus 37 lg~g~~v--e~~~~TTF~IER~gd~~~~ 62 (78)
+|+++-| .-.+|.||.+|-||.||-+
T Consensus 33 agkremviitf~ngatfqvevpgsqh~~ 60 (104)
T 3chb_D 33 AGKREMAIITFKNGATFQVEVPGSQHID 60 (104)
T ss_dssp STTCCEEEEECTTCCEEEECCCCTTSCH
T ss_pred CCCEEEEEEEECCCCEEEEECCCCHHHH
T ss_conf 5760699999428967999668610134
No 5
>>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} (D:)
Probab=26.52 E-value=32 Score=16.80 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=20.0
Q ss_pred HHCCCCC--CCCCCEEEEEECCCCCCCE
Q ss_conf 2178735--5357128999416765430
Q gi|254781015|r 37 LGSGSEV--SKDKGITFKVEKVGDQHNK 62 (78)
Q Consensus 37 lg~g~~v--e~~~~TTF~IER~gd~~~~ 62 (78)
+|+++-| .-.+|.||.+|-||.||-+
T Consensus 32 agkremviitf~ngatfqvevpgsqh~~ 59 (113)
T 1ltr_D 32 AGKREMVIITFKSGATFQVEVPGSQHID 59 (113)
T ss_dssp STTCCCEEEECTTSCEEEECCCSTTSCS
T ss_pred CCCEEEEEEEECCCCEEEEECCCCHHHH
T ss_conf 6760699999438967999668601124
No 6
>>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} (A:1-175)
Probab=26.25 E-value=14 Score=18.82 Aligned_cols=13 Identities=54% Similarity=0.986 Sum_probs=8.9
Q ss_pred HHHHCCCCCCCCEEEE
Q ss_conf 0220689887741563
Q gi|254781015|r 12 ALWNQTGKHPSPIFTT 27 (78)
Q Consensus 12 alwyq~g~hpsp~lrt 27 (78)
||||++|. |++--
T Consensus 35 ALWYkhG~---Pv~GR 47 (175)
T 2bjq_A 35 ALWYKFGK---PIHGR 47 (175)
T ss_dssp EEEEETTE---EEEEE
T ss_pred EEEECCCC---CCCCC
T ss_conf 87530597---34240
No 7
>>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} (A:1-180)
Probab=25.65 E-value=14 Score=18.73 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=8.0
Q ss_pred HHHHCCCCCCCCEEE
Q ss_conf 022068988774156
Q gi|254781015|r 12 ALWNQTGKHPSPIFT 26 (78)
Q Consensus 12 alwyq~g~hpsp~lr 26 (78)
||||++|. |++-
T Consensus 36 ALWYkhG~---Pv~G 47 (180)
T 2bjr_A 36 ALWYKNGR---PXHG 47 (180)
T ss_dssp EEEEETTE---EEEE
T ss_pred EEEECCCC---CCCC
T ss_conf 87420597---3424
No 8
>>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} (D:)
Probab=20.85 E-value=48 Score=15.85 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=20.2
Q ss_pred HHHCCCCC--CCCCCEEEEEECCCCCCCE
Q ss_conf 32178735--5357128999416765430
Q gi|254781015|r 36 FLGSGSEV--SKDKGITFKVEKVGDQHNK 62 (78)
Q Consensus 36 ~lg~g~~v--e~~~~TTF~IER~gd~~~~ 62 (78)
++|+++-| .-.+|.||.+|-||.||-+
T Consensus 31 lagkremviitf~~gatfqvevpgsqhi~ 59 (129)
T 1b44_D 31 MAGKREMVIITFKSGATFQVEVPGSQHID 59 (129)
T ss_dssp CBTTBCCEEEECTTSCEEEECCCCTTSCS
T ss_pred HCCCEEEEEEEECCCCEEEEECCCCHHHH
T ss_conf 45760699999428867999668610034
No 9
>>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:1-125)
Probab=16.69 E-value=90 Score=14.37 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=30.4
Q ss_pred CCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 898877415630876402232178735535712899941676
Q gi|254781015|r 17 TGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGD 58 (78)
Q Consensus 17 ~g~hpsp~lrtr~P~a~r~~lg~g~~ve~~~~TTF~IER~gd 58 (78)
.=..-+|++..+.|...|+ .+...|+..+.+.++.|-|+..
T Consensus 84 ~l~~~~P~~~~~l~~G~Rv-~~~~~p~~~~g~~~i~IRk~~~ 124 (125)
T 2gza_A 84 DISDSRPVLSAILPMGERI-QIVRPPACEHGTISVTIRKPSF 124 (125)
T ss_dssp CCSSSSCEEEEECTTSCEE-EEECTTTBCTTCCEEEEECCCC
T ss_pred CCCCCCCEEEEECCCCCEE-EEEECCCCCCCCEEEEEECCCH
T ss_conf 4456785468783789557-7520342248846799824630
No 10
>>3bx1_D BASI, alpha-amylase/subtilisin inhibitor; complex (proteinase/inhibitor) enzyme inhibition, savinase, barley alpha-amylase/subtilisin inhibitor; 1.85A {Hordeum vulgare} (D:)
Probab=12.73 E-value=1.1e+02 Score=13.83 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=13.4
Q ss_pred CCCCCCCCEEEEEECCCCCC
Q ss_conf 73553571289994167654
Q gi|254781015|r 41 SEVSKDKGITFKVEKVGDQH 60 (78)
Q Consensus 41 ~~ve~~~~TTF~IER~gd~~ 60 (78)
.+.....-..|+|||.++..
T Consensus 116 ~~~~~~~~~~FkIek~~~~~ 135 (181)
T 3bx1_D 116 DPSPSGRENAFRIEKYSGAE 135 (181)
T ss_dssp SCCTTCCTTCEEEEECTTSC
T ss_pred CCCCCCCCCCEEEEECCCCC
T ss_conf 88866766308999907877
Done!