Query gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 10 out of 12 Neff 1.7 Searched_HMMs 13730 Date Wed Jun 1 11:05:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781015.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2bjqa1 b.169.1.1 (A:175-344) 29.7 4.5 0.00033 19.4 -0.4 12 12-26 45-56 (170) 2 d2bjqa2 b.169.1.1 (A:5-174) Sp 27.8 5.1 0.00037 19.1 -0.4 12 12-26 31-42 (170) 3 d3chbd_ b.40.2.1 (D:) Cholera 27.4 12 0.0009 16.9 1.6 26 37-62 32-59 (103) 4 d2bjra2 b.169.1.1 (A:185-368) 23.3 6.9 0.0005 18.3 -0.4 11 12-25 47-57 (184) 5 d1qnaa1 d.129.1.1 (A:17-115) T 23.1 13 0.00095 16.8 1.0 33 10-43 32-64 (99) 6 d1aisa2 d.129.1.1 (A:93-181) T 22.9 16 0.0012 16.3 1.5 33 10-43 33-65 (89) 7 d2bjra1 b.169.1.1 (A:6-184) Sp 22.7 7.2 0.00052 18.2 -0.4 11 12-25 31-41 (179) 8 d1aisa1 d.129.1.1 (A:1-92) TAT 21.9 17 0.0013 16.1 1.5 32 11-43 35-66 (92) 9 d1mp9a1 d.129.1.1 (A:5-96) TAT 20.7 19 0.0014 15.9 1.5 33 10-43 34-66 (92) 10 d1mp9a2 d.129.1.1 (A:97-197) T 17.1 26 0.0019 15.2 1.5 30 14-43 36-65 (101) No 1 >d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]} Probab=29.69 E-value=4.5 Score=19.36 Aligned_cols=12 Identities=50% Similarity=1.257 Sum_probs=8.5 Q ss_pred HHHHCCCCCCCCEEE Q ss_conf 022068988774156 Q gi|254781015|r 12 ALWNQTGKHPSPIFT 26 (78) Q Consensus 12 alwyq~g~hpsp~lr 26 (78) ||||++|. |++- T Consensus 45 ALWYkhG~---Pv~G 56 (170) T d2bjqa1 45 ALWYEHGQ---PVFG 56 (170) T ss_dssp EEEEETTE---EEEE T ss_pred EEEECCCC---CCEE T ss_conf 87132697---1321 No 2 >d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]} Probab=27.78 E-value=5.1 Score=19.06 Aligned_cols=12 Identities=58% Similarity=1.074 Sum_probs=8.2 Q ss_pred HHHHCCCCCCCCEEE Q ss_conf 022068988774156 Q gi|254781015|r 12 ALWNQTGKHPSPIFT 26 (78) Q Consensus 12 alwyq~g~hpsp~lr 26 (78) ||||++|. |++- T Consensus 31 ALWYkhG~---Pv~G 42 (170) T d2bjqa2 31 ALWYKFGK---PIHG 42 (170) T ss_dssp EEEEETTE---EEEE T ss_pred EEEECCCC---CCEE T ss_conf 88331697---1231 No 3 >d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]} Probab=27.41 E-value=12 Score=16.95 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=20.0 Q ss_pred HHCCCCC--CCCCCEEEEEECCCCCCCE Q ss_conf 2178735--5357128999416765430 Q gi|254781015|r 37 LGSGSEV--SKDKGITFKVEKVGDQHNK 62 (78) Q Consensus 37 lg~g~~v--e~~~~TTF~IER~gd~~~~ 62 (78) +|+++-| .-.+|.||.+|-||.||-+ T Consensus 32 agkremviisf~ngatfqvevpgsqh~~ 59 (103) T d3chbd_ 32 AGKREMAIITFKNGATFQVEVPGSQHID 59 (103) T ss_dssp STTCCEEEEECTTCCEEEECCCCTTSCH T ss_pred CCCEEEEEEEECCCCEEEEECCCCHHHH T ss_conf 5760699999428967999668610134 No 4 >d2bjra2 b.169.1.1 (A:185-368) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]} Probab=23.26 E-value=6.9 Score=18.33 Aligned_cols=11 Identities=55% Similarity=1.286 Sum_probs=7.9 Q ss_pred HHHHCCCCCCCCEE Q ss_conf 02206898877415 Q gi|254781015|r 12 ALWNQTGKHPSPIF 25 (78) Q Consensus 12 alwyq~g~hpsp~l 25 (78) ||||++| .|++ T Consensus 47 ALWYkhG---~Pi~ 57 (184) T d2bjra2 47 ALWYQSG---EPVM 57 (184) T ss_dssp EEEEETT---EEEE T ss_pred EEEECCC---CCCE T ss_conf 9974479---9874 No 5 >d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=23.08 E-value=13 Score=16.82 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=24.6 Q ss_pred CCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC Q ss_conf 0102206898877415630876402232178735 Q gi|254781015|r 10 SNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV 43 (78) Q Consensus 10 analwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v 43 (78) .|+. |.|..+|.-++|.++|.+.-+.+.+|.-+ T Consensus 32 ~n~e-YePe~fpgli~R~~~P~~t~lIF~SGKiv 64 (99) T d1qnaa1 32 RNAE-YNPKRFAAVIMRIREPKTTALIFASGKMV 64 (99) T ss_dssp SSEE-ECTTTCSEEEEEETTTTEEEEEETTSEEE T ss_pred CCCE-ECCCCCCEEEEEECCCCEEEEEECCCEEE T ss_conf 9988-99653877999967983999997697799 No 6 >d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=22.87 E-value=16 Score=16.31 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=24.3 Q ss_pred CCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC Q ss_conf 0102206898877415630876402232178735 Q gi|254781015|r 10 SNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV 43 (78) Q Consensus 10 analwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v 43 (78) .|+ -|.|..+|.-++|.++|..--+.+.+|.-+ T Consensus 33 ~~~-~Y~Pe~fpgli~R~~~p~~t~lIF~SGKiv 65 (89) T d1aisa2 33 PNC-EYEPEQFPGVIYRVKEPKSVILLFSSGKIV 65 (89) T ss_dssp TTE-ECCTTTCSSEEEEETTTTEEEEECTTSEEE T ss_pred CCC-EECCCCCCEEEEEECCCCEEEEEECCCEEE T ss_conf 696-899543864899976995899998588899 No 7 >d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]} Probab=22.69 E-value=7.2 Score=18.23 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=8.6 Q ss_pred HHHHCCCCCCCCEE Q ss_conf 02206898877415 Q gi|254781015|r 12 ALWNQTGKHPSPIF 25 (78) Q Consensus 12 alwyq~g~hpsp~l 25 (78) ||||++| .|++ T Consensus 31 ALWYk~G---~Pi~ 41 (179) T d2bjra1 31 ALWYKNG---RPMH 41 (179) T ss_dssp EEEEETT---EEEE T ss_pred EEEECCC---CCCC T ss_conf 9985479---9874 No 8 >d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Probab=21.92 E-value=17 Score=16.15 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.1 Q ss_pred CHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC Q ss_conf 102206898877415630876402232178735 Q gi|254781015|r 11 NALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV 43 (78) Q Consensus 11 nalwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v 43 (78) |+ -|.|..+|.-++|.++|...-+-+.+|.-+ T Consensus 35 ~~-~YePe~fpgl~~R~~~p~~~~lIF~sGkiv 66 (92) T d1aisa1 35 NS-KYNPEEFPGIICHLDDPKVALLIFSSGKLV 66 (92) T ss_dssp TC-BCCTTTCSSEEEECSSSCCEEEECTTSEEE T ss_pred CC-EECCCCCCEEEEEECCCCEEEEEECCCEEE T ss_conf 97-899654976999967995899997898899 No 9 >d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=20.71 E-value=19 Score=15.92 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=24.7 Q ss_pred CCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC Q ss_conf 0102206898877415630876402232178735 Q gi|254781015|r 10 SNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV 43 (78) Q Consensus 10 analwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v 43 (78) .|+ -|.|..||.-++|.+.|...-+.+.+|.-+ T Consensus 34 ~~~-~YePe~fpgli~R~~~p~~t~lIF~SGkiv 66 (92) T d1mp9a1 34 PNV-EYDPDQFPGLIFRLESPKITSLIFKSGKMV 66 (92) T ss_dssp TTC-BCCTTTCSSEEEEETTTTEEEEECTTSEEE T ss_pred CCC-EECCCCCCEEEEEECCCCEEEEEECCCEEE T ss_conf 998-888765865899988995799998588799 No 10 >d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=17.15 E-value=26 Score=15.22 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=22.4 Q ss_pred HHCCCCCCCCEEEECCCCCHHHHHHCCCCC Q ss_conf 206898877415630876402232178735 Q gi|254781015|r 14 WNQTGKHPSPIFTTRHPQSYRIFLGSGSEV 43 (78) Q Consensus 14 wyq~g~hpsp~lrtr~P~a~r~~lg~g~~v 43 (78) -|.|..+|.-++|.++|...-+.+.+|.-+ T Consensus 36 ~YePe~fpgli~R~~~pk~t~lIF~SGKiv 65 (101) T d1mp9a2 36 MYEPEQFPGLIYRMDEPRVVLLIFSSGKMV 65 (101) T ss_dssp ECCTTTCSSEEEEETTTTEEEEECTTSEEE T ss_pred EECCCCCCEEEEEECCCCEEEEEECCCEEE T ss_conf 889663871899966996799997687799 Done!