Query         gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    10 out of 12
Neff          1.7 
Searched_HMMs 13730
Date          Wed Jun  1 11:05:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781015.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2bjqa1 b.169.1.1 (A:175-344)   29.7     4.5 0.00033   19.4  -0.4   12   12-26     45-56  (170)
  2 d2bjqa2 b.169.1.1 (A:5-174) Sp  27.8     5.1 0.00037   19.1  -0.4   12   12-26     31-42  (170)
  3 d3chbd_ b.40.2.1 (D:) Cholera   27.4      12  0.0009   16.9   1.6   26   37-62     32-59  (103)
  4 d2bjra2 b.169.1.1 (A:185-368)   23.3     6.9  0.0005   18.3  -0.4   11   12-25     47-57  (184)
  5 d1qnaa1 d.129.1.1 (A:17-115) T  23.1      13 0.00095   16.8   1.0   33   10-43     32-64  (99)
  6 d1aisa2 d.129.1.1 (A:93-181) T  22.9      16  0.0012   16.3   1.5   33   10-43     33-65  (89)
  7 d2bjra1 b.169.1.1 (A:6-184) Sp  22.7     7.2 0.00052   18.2  -0.4   11   12-25     31-41  (179)
  8 d1aisa1 d.129.1.1 (A:1-92) TAT  21.9      17  0.0013   16.1   1.5   32   11-43     35-66  (92)
  9 d1mp9a1 d.129.1.1 (A:5-96) TAT  20.7      19  0.0014   15.9   1.5   33   10-43     34-66  (92)
 10 d1mp9a2 d.129.1.1 (A:97-197) T  17.1      26  0.0019   15.2   1.5   30   14-43     36-65  (101)

No 1  
>d2bjqa1 b.169.1.1 (A:175-344) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Probab=29.69  E-value=4.5  Score=19.36  Aligned_cols=12  Identities=50%  Similarity=1.257  Sum_probs=8.5

Q ss_pred             HHHHCCCCCCCCEEE
Q ss_conf             022068988774156
Q gi|254781015|r   12 ALWNQTGKHPSPIFT   26 (78)
Q Consensus        12 alwyq~g~hpsp~lr   26 (78)
                      ||||++|.   |++-
T Consensus        45 ALWYkhG~---Pv~G   56 (170)
T d2bjqa1          45 ALWYEHGQ---PVFG   56 (170)
T ss_dssp             EEEEETTE---EEEE
T ss_pred             EEEECCCC---CCEE
T ss_conf             87132697---1321


No 2  
>d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Probab=27.78  E-value=5.1  Score=19.06  Aligned_cols=12  Identities=58%  Similarity=1.074  Sum_probs=8.2

Q ss_pred             HHHHCCCCCCCCEEE
Q ss_conf             022068988774156
Q gi|254781015|r   12 ALWNQTGKHPSPIFT   26 (78)
Q Consensus        12 alwyq~g~hpsp~lr   26 (78)
                      ||||++|.   |++-
T Consensus        31 ALWYkhG~---Pv~G   42 (170)
T d2bjqa2          31 ALWYKFGK---PIHG   42 (170)
T ss_dssp             EEEEETTE---EEEE
T ss_pred             EEEECCCC---CCEE
T ss_conf             88331697---1231


No 3  
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=27.41  E-value=12  Score=16.95  Aligned_cols=26  Identities=35%  Similarity=0.464  Sum_probs=20.0

Q ss_pred             HHCCCCC--CCCCCEEEEEECCCCCCCE
Q ss_conf             2178735--5357128999416765430
Q gi|254781015|r   37 LGSGSEV--SKDKGITFKVEKVGDQHNK   62 (78)
Q Consensus        37 lg~g~~v--e~~~~TTF~IER~gd~~~~   62 (78)
                      +|+++-|  .-.+|.||.+|-||.||-+
T Consensus        32 agkremviisf~ngatfqvevpgsqh~~   59 (103)
T d3chbd_          32 AGKREMAIITFKNGATFQVEVPGSQHID   59 (103)
T ss_dssp             STTCCEEEEECTTCCEEEECCCCTTSCH
T ss_pred             CCCEEEEEEEECCCCEEEEECCCCHHHH
T ss_conf             5760699999428967999668610134


No 4  
>d2bjra2 b.169.1.1 (A:185-368) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Probab=23.26  E-value=6.9  Score=18.33  Aligned_cols=11  Identities=55%  Similarity=1.286  Sum_probs=7.9

Q ss_pred             HHHHCCCCCCCCEE
Q ss_conf             02206898877415
Q gi|254781015|r   12 ALWNQTGKHPSPIF   25 (78)
Q Consensus        12 alwyq~g~hpsp~l   25 (78)
                      ||||++|   .|++
T Consensus        47 ALWYkhG---~Pi~   57 (184)
T d2bjra2          47 ALWYQSG---EPVM   57 (184)
T ss_dssp             EEEEETT---EEEE
T ss_pred             EEEECCC---CCCE
T ss_conf             9974479---9874


No 5  
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.08  E-value=13  Score=16.82  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             CCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC
Q ss_conf             0102206898877415630876402232178735
Q gi|254781015|r   10 SNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV   43 (78)
Q Consensus        10 analwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v   43 (78)
                      .|+. |.|..+|.-++|.++|.+.-+.+.+|.-+
T Consensus        32 ~n~e-YePe~fpgli~R~~~P~~t~lIF~SGKiv   64 (99)
T d1qnaa1          32 RNAE-YNPKRFAAVIMRIREPKTTALIFASGKMV   64 (99)
T ss_dssp             SSEE-ECTTTCSEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCCE-ECCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf             9988-99653877999967983999997697799


No 6  
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=22.87  E-value=16  Score=16.31  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             CCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC
Q ss_conf             0102206898877415630876402232178735
Q gi|254781015|r   10 SNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV   43 (78)
Q Consensus        10 analwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v   43 (78)
                      .|+ -|.|..+|.-++|.++|..--+.+.+|.-+
T Consensus        33 ~~~-~Y~Pe~fpgli~R~~~p~~t~lIF~SGKiv   65 (89)
T d1aisa2          33 PNC-EYEPEQFPGVIYRVKEPKSVILLFSSGKIV   65 (89)
T ss_dssp             TTE-ECCTTTCSSEEEEETTTTEEEEECTTSEEE
T ss_pred             CCC-EECCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf             696-899543864899976995899998588899


No 7  
>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Probab=22.69  E-value=7.2  Score=18.23  Aligned_cols=11  Identities=45%  Similarity=1.138  Sum_probs=8.6

Q ss_pred             HHHHCCCCCCCCEE
Q ss_conf             02206898877415
Q gi|254781015|r   12 ALWNQTGKHPSPIF   25 (78)
Q Consensus        12 alwyq~g~hpsp~l   25 (78)
                      ||||++|   .|++
T Consensus        31 ALWYk~G---~Pi~   41 (179)
T d2bjra1          31 ALWYKNG---RPMH   41 (179)
T ss_dssp             EEEEETT---EEEE
T ss_pred             EEEECCC---CCCC
T ss_conf             9985479---9874


No 8  
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=21.92  E-value=17  Score=16.15  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=24.1

Q ss_pred             CHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC
Q ss_conf             102206898877415630876402232178735
Q gi|254781015|r   11 NALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV   43 (78)
Q Consensus        11 nalwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v   43 (78)
                      |+ -|.|..+|.-++|.++|...-+-+.+|.-+
T Consensus        35 ~~-~YePe~fpgl~~R~~~p~~~~lIF~sGkiv   66 (92)
T d1aisa1          35 NS-KYNPEEFPGIICHLDDPKVALLIFSSGKLV   66 (92)
T ss_dssp             TC-BCCTTTCSSEEEECSSSCCEEEECTTSEEE
T ss_pred             CC-EECCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf             97-899654976999967995899997898899


No 9  
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=20.71  E-value=19  Score=15.92  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=24.7

Q ss_pred             CCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCC
Q ss_conf             0102206898877415630876402232178735
Q gi|254781015|r   10 SNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEV   43 (78)
Q Consensus        10 analwyq~g~hpsp~lrtr~P~a~r~~lg~g~~v   43 (78)
                      .|+ -|.|..||.-++|.+.|...-+.+.+|.-+
T Consensus        34 ~~~-~YePe~fpgli~R~~~p~~t~lIF~SGkiv   66 (92)
T d1mp9a1          34 PNV-EYDPDQFPGLIFRLESPKITSLIFKSGKMV   66 (92)
T ss_dssp             TTC-BCCTTTCSSEEEEETTTTEEEEECTTSEEE
T ss_pred             CCC-EECCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf             998-888765865899988995799998588799


No 10 
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=17.15  E-value=26  Score=15.22  Aligned_cols=30  Identities=20%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             HHCCCCCCCCEEEECCCCCHHHHHHCCCCC
Q ss_conf             206898877415630876402232178735
Q gi|254781015|r   14 WNQTGKHPSPIFTTRHPQSYRIFLGSGSEV   43 (78)
Q Consensus        14 wyq~g~hpsp~lrtr~P~a~r~~lg~g~~v   43 (78)
                      -|.|..+|.-++|.++|...-+.+.+|.-+
T Consensus        36 ~YePe~fpgli~R~~~pk~t~lIF~SGKiv   65 (101)
T d1mp9a2          36 MYEPEQFPGLIYRMDEPRVVLLIFSSGKMV   65 (101)
T ss_dssp             ECCTTTCSSEEEEETTTTEEEEECTTSEEE
T ss_pred             EECCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf             889663871899966996799997687799


Done!