BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781015|ref|YP_003065428.1| hypothetical protein
CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
(78 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040692|gb|ACT57488.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 78
Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH 60
MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH
Sbjct: 1 MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH 60
Query: 61 NKILLKEYSSDNNNNKKL 78
NKILLKEYSSDNNNNKKL
Sbjct: 61 NKILLKEYSSDNNNNKKL 78
>gi|150395842|ref|YP_001326309.1| peptidoglycan binding domain-containing protein [Sinorhizobium
medicae WSM419]
gi|150027357|gb|ABR59474.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae
WSM419]
Length = 312
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQ-----SYRIFLGSGSEVSKDKGITFKVEKVG 57
+ F ++ +NA+W Q G+HPSP+ TR P + R+ G V + TF +E+ G
Sbjct: 55 VVFSFVAANAMWYQHGRHPSPLLRTRVPLVSPEVAERLAAAKGEPVQQRNVTTFVIEREG 114
Query: 58 DQHNKILLKEYSSDNNNNK 76
+ +++ + D +N +
Sbjct: 115 ETP----VRDAAPDGSNER 129
>gi|307304332|ref|ZP_07584084.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti
BL225C]
gi|307319437|ref|ZP_07598864.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti
AK83]
gi|306894809|gb|EFN25568.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti
AK83]
gi|306902800|gb|EFN33393.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti
BL225C]
Length = 319
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQ-----SYRIFLGSGSEVSKDKGITFKVEKVG 57
+ F ++ +NA+W Q G HPSP+ TR P + R+ G V + TF +E+ G
Sbjct: 55 VVFSFVAANAMWYQNGTHPSPLLRTRVPLVSPEVAERLAAAKGEPVEQRDVTTFVIEREG 114
Query: 58 DQHNKILLKEYSSDNNNNK 76
D + ++ +N +
Sbjct: 115 DAKAG----DAATAGSNER 129
>gi|195970188|ref|NP_385109.2| hypothetical protein SMc00060 [Sinorhizobium meliloti 1021]
gi|187904159|emb|CAC45575.2| Hypothetical protein SMc00060 [Sinorhizobium meliloti 1021]
Length = 319
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQ-----SYRIFLGSGSEVSKDKGITFKVEKVG 57
+ F ++ +NA+W Q G HPSP+ TR P + R+ G V + TF +E+ G
Sbjct: 55 VVFSFVAANAMWYQNGTHPSPLLRTRVPLVSPEVAERLAAAKGEPVEQRDVTTFVIEREG 114
Query: 58 DQHNKILLKEYSSDNNNNK 76
D + ++ +N +
Sbjct: 115 DAKAG----DAATAGSNER 129
>gi|227821338|ref|YP_002825308.1| putative peptidoglycan-binding protein [Sinorhizobium fredii
NGR234]
gi|227340337|gb|ACP24555.1| putative peptidoglycan-binding protein [Sinorhizobium fredii
NGR234]
Length = 326
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQ-----SYRIFLGSGSEVSKDKGITFKVEKVG 57
+ F ++ +NA+W Q G HPSP+ TR P + R+ +G V K TF +E+ G
Sbjct: 59 VVFSFVAANAMWYQHGNHPSPLLRTRVPLVGPEVAERLAAANGEAVEPRKVTTFVIEREG 118
Query: 58 DQHNKILLKEYSSDNNNNKKL 78
+ ++ + + ++ +++ L
Sbjct: 119 EARSEQVKEAPAAQGESSENL 139
>gi|218674837|ref|ZP_03524506.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli GR56]
Length = 318
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGD 58
F+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 68 FVIFSFVAANALWYQPGLHPHPIFRTRDPQSSNV-LGARRPAEEQQGDVTTFRIERPED 125
>gi|86356893|ref|YP_468785.1| putative peptidoglycan-binding protein (cell wall degradation
activity) [Rhizobium etli CFN 42]
gi|86280995|gb|ABC90058.1| putative peptidoglycan-binding protein (cell wall degradation
activity) [Rhizobium etli CFN 42]
Length = 296
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKD--KGITFKVEKVGD 58
F+ F ++ +NALW Q G HP PIF TR PQS + LG+ + TF++E+ D
Sbjct: 47 FVIFSFVAANALWYQPGLHPHPIFRTRDPQSPTV-LGARRPADEQPADVTTFRIERPED 104
>gi|241203749|ref|YP_002974845.1| peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857639|gb|ACS55306.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 317
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGDQH 60
+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 69 VIFSFVAANALWYQPGLHPHPIFRTRDPQSPTV-LGARRPAEEQQGDVTTFRIERPRDTA 127
Query: 61 NKILLKEYSSDNNNNKKL 78
++ +L
Sbjct: 128 TTNATPAPAAPGQQPSQL 145
>gi|116251151|ref|YP_766989.1| peptidoglycan binding transmembrane protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115255799|emb|CAK06880.1| putative peptidoglycan binding transmembrane protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 317
Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGDQH 60
+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 69 VIFSFVAANALWYQPGLHPHPIFRTRDPQSPTV-LGARRPAEEQQGDVTTFRIERPQDTA 127
Query: 61 NKILLKEYSSDNNNNKKL 78
++ +L
Sbjct: 128 TTNATPAPAAPGQQPSQL 145
>gi|190890966|ref|YP_001977508.1| peptidoglycan binding (cell wall degradation) protein [Rhizobium
etli CIAT 652]
gi|218516730|ref|ZP_03513570.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli 8C-3]
gi|190696245|gb|ACE90330.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli CIAT 652]
Length = 318
Score = 94.5 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGD 58
+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 69 VIFSFVAANALWYQPGLHPHPIFRTRDPQSSNV-LGARRPAEEQQGEVTTFRIERPED 125
>gi|218661838|ref|ZP_03517768.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli IE4771]
Length = 318
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGD 58
+ F ++ +NALW Q G HP PI TR PQS + LG+ + +G TF++E+ D
Sbjct: 69 VIFSFVAANALWYQPGLHPHPILRTRDPQSSNV-LGARRPAEEQQGEVTTFRIERPED 125
>gi|327193899|gb|EGE60774.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli CNPAF512]
Length = 318
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGD 58
+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 69 VIFSFVAANALWYQPGLHPHPIFRTRDPQSSNV-LGARRPAEEQQGEVTTFRIERPED 125
>gi|218508965|ref|ZP_03506843.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli Brasil 5]
Length = 272
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGD 58
+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 23 VIFSFVAANALWYQPGLHPHPIFRTRDPQSSNV-LGARRPAEEQQGEVTTFRIERPED 79
>gi|209548488|ref|YP_002280405.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534244|gb|ACI54179.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 307
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGD 58
+ F ++ +NALW Q G HP PIF TR PQS + LG+ + +G TF++E+ D
Sbjct: 58 VIFSFVAANALWYQPGLHPHPIFRTRDPQSSNV-LGARRPAEEQQGDVTTFRIERPED 114
>gi|222085301|ref|YP_002543831.1| peptidoglycan-binding protein (cell wall degradation activity)
[Agrobacterium radiobacter K84]
gi|221722749|gb|ACM25905.1| peptidoglycan-binding protein (cell wall degradation activity)
[Agrobacterium radiobacter K84]
Length = 280
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTRHPQSY-----RIFLGSGSEVSKDKGITFKVEKV 56
F F ++ +NALW Q G HPSP+ TR P + R G + TF++E+
Sbjct: 74 FAVFGFVTANALWYQVGIHPSPLLRTREPGAPYQIPGRKAFLLGQQADTGNVTTFRIERQ 133
Query: 57 GDQHNKILLKEYSSDNNNNK 76
E S+D +N+
Sbjct: 134 DS--------EASNDAASNQ 145
>gi|315122514|ref|YP_004063003.1| hypothetical protein CKC_03830 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495916|gb|ADR52515.1| hypothetical protein CKC_03830 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 138
Score = 77.1 bits (188), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVS---KDKGITFKVEKVGDQ 59
+ F WIL NALWNQ GKHPSPIFTTRH QS RI LGS ++K +TFKV+++GD+
Sbjct: 40 VIFLWILFNALWNQKGKHPSPIFTTRHSQSNRIILGSNHNSKDFFQEKSMTFKVKRMGDR 99
Query: 60 HNKILLKEYSSDNNNNKKL 78
++ ILL + SS N K L
Sbjct: 100 YDTILLHDSSSVEKNKKLL 118
>gi|325292299|ref|YP_004278163.1| peptidoglycan binding protein [Agrobacterium sp. H13-3]
gi|325060152|gb|ADY63843.1| putative peptidoglycan binding protein [Agrobacterium sp. H13-3]
Length = 307
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLG--SGSEV-SKDKGITFKVEKVGDQ 59
+ F ++ +NALW Q G HPSP TR + G + + ++ TF++E+ +
Sbjct: 47 VVFGFVAANALWYQPGVHPSPFLRTRDAANPNGIAGYRAAEPLGTQGHVTTFRIERPSET 106
>gi|15888260|ref|NP_353941.1| putative peptidoglycan binding protein [Agrobacterium tumefaciens
str. C58]
gi|15155918|gb|AAK86726.1| putative peptidoglycan binding protein [Agrobacterium tumefaciens
str. C58]
Length = 306
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSK----DKGITFKVEKVGD 58
+ F ++ +NALW Q G HP+P TR ++ G TF++E+ +
Sbjct: 50 VVFGFVAANALWYQPGVHPTPFLRTRDAENPNGIAGY-RPTEPLGTHGNVTTFRIERPAE 108
>gi|222147979|ref|YP_002548936.1| hypothetical protein Avi_1306 [Agrobacterium vitis S4]
gi|221734967|gb|ACM35930.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 374
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 9 LSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGS----EVSKDKGITFKVEKV 56
+NA W Q G+HPSP TR P + LG S + D TF++++
Sbjct: 54 AANAFWYQPGRHPSPFLRTRDPHDFTAMLGLNSNHSLKPDPDDVTTFRIQRQ 105
>gi|163759055|ref|ZP_02166141.1| hypothetical protein HPDFL43_04805 [Hoeflea phototrophica DFL-43]
gi|162283459|gb|EDQ33744.1| hypothetical protein HPDFL43_04805 [Hoeflea phototrophica DFL-43]
Length = 320
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGS---------GSEVSKDKGITFKV 53
+ F +I +NALW+Q G HP+PI TR + ++V TF++
Sbjct: 35 VIFSFISANALWSQPGNHPAPILKTREVGPPTAHALTPVADTAAPAVADVPARSVTTFRI 94
Query: 54 EKVGDQ 59
E+ +
Sbjct: 95 ERSDET 100
>gi|218458840|ref|ZP_03498931.1| putative peptidoglycan binding (cell wall degradation) protein
[Rhizobium etli Kim 5]
Length = 236
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 17 TGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKG--ITFKVEKVGDQ 59
G HP PI TR PQS + LG+ + +G TF++E+ D
Sbjct: 1 PGLHPHPILRTRDPQSSNV-LGARRPAEEQQGEVTTFRIERPEDA 44
>gi|304393565|ref|ZP_07375493.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130]
gi|303294572|gb|EFL88944.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130]
Length = 262
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTR----HPQSYRIFLGSGSEVSKDKGITFKVEKVGD 58
+ I++NA+W Q GKHP+P+F+TR P S + + + T V D
Sbjct: 39 VMMAAIVTNAVWYQPGKHPAPLFSTRVAAVEPTSKSVPAIKTVKTTSVNPATKVVTAE-D 97
Query: 59 QHNKILLKE 67
++ +L+E
Sbjct: 98 AASREVLRE 106
>gi|118593468|ref|ZP_01550848.1| hypothetical protein SIAM614_16952 [Stappia aggregata IAM 12614]
gi|118433947|gb|EAV40605.1| hypothetical protein SIAM614_16952 [Stappia aggregata IAM 12614]
Length = 259
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 1 MFLFFCWILSNALWNQTGKHPSPIFTTRH-PQSYRIFLGSGSE--VSKDKGITFKVEKVG 57
M L C I++NA+ Q G+HP+P+FTTR P S ++ G + + T ++
Sbjct: 43 MGLTACLIVANAVGLQPGRHPAPLFTTRDRPDSMQLPEPDGRSPGLQVQEISTLVLDLQI 102
Query: 58 DQHNKILLKEYSSDNNN 74
KI L E D N
Sbjct: 103 SLR-KIGLYEGPLDGLN 118
>gi|294851948|ref|ZP_06792621.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
gi|294820537|gb|EFG37536.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
Length = 338
Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 63 LVVMGFVSANALWYQPEAHDAVFFRTR 89
>gi|17987639|ref|NP_540273.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260545698|ref|ZP_05821439.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC
8038]
gi|260563641|ref|ZP_05834127.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. 16M]
gi|260566833|ref|ZP_05837303.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str.
40]
gi|261757799|ref|ZP_06001508.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99]
gi|265999562|ref|ZP_05466915.2| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|17983350|gb|AAL52537.1| peptidoglycan binding domain containing protein [Brucella
melitensis bv. 1 str. 16M]
gi|260097105|gb|EEW80980.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC
8038]
gi|260153657|gb|EEW88749.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. 16M]
gi|260156351|gb|EEW91431.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str.
40]
gi|261737783|gb|EEY25779.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99]
gi|263094677|gb|EEZ18456.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 2 str. 63/9]
gi|326408602|gb|ADZ65667.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28]
gi|326538323|gb|ADZ86538.1| peptidoglycan-binding domain 1 protein [Brucella melitensis
M5-90]
Length = 299
Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 24 LVVMGFVSANALWYQPEAHDAVFFRTR 50
>gi|306842151|ref|ZP_07474820.1| peptidoglycan binding domain-containing protein [Brucella sp.
BO2]
gi|306287738|gb|EFM59169.1| peptidoglycan binding domain-containing protein [Brucella sp.
BO2]
Length = 322
Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 47 LVVMGFVSANALWYQPEAHDAVFFRTR 73
>gi|62289545|ref|YP_221338.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941]
gi|62195677|gb|AAX73977.1| hypothetical peptidoglycan-binding protein [Brucella abortus bv.
1 str. 9-941]
Length = 322
Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 47 LVVMGFVSANALWYQPEAHDAVFFRTR 73
>gi|23501467|ref|NP_697594.1| peptidoglycan-binding protein [Brucella suis 1330]
gi|82699474|ref|YP_414048.1| peptidoglycan binding domain-containing protein [Brucella
melitensis biovar Abortus 2308]
gi|148560514|ref|YP_001258575.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840]
gi|161618553|ref|YP_001592440.1| peptidoglycan binding domain-containing protein [Brucella canis
ATCC 23365]
gi|189023802|ref|YP_001934570.1| peptidoglycan binding domain 1 [Brucella abortus S19]
gi|225627085|ref|ZP_03785123.1| peptidoglycan-binding protein [Brucella ceti str. Cudo]
gi|225852107|ref|YP_002732340.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC
23457]
gi|254688863|ref|ZP_05152117.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6
str. 870]
gi|254696994|ref|ZP_05158822.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2
str. 86/8/59]
gi|254701373|ref|ZP_05163201.1| Peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
gi|254703918|ref|ZP_05165746.1| Peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
686]
gi|254707706|ref|ZP_05169534.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M163/99/10]
gi|254709711|ref|ZP_05171522.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
B2/94]
gi|254712866|ref|ZP_05174677.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
gi|254716780|ref|ZP_05178591.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|254729895|ref|ZP_05188473.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4
str. 292]
gi|256031202|ref|ZP_05444816.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M292/94/1]
gi|256044287|ref|ZP_05447191.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. Rev.1]
gi|256060710|ref|ZP_05450874.1| Peptidoglycan-binding domain 1 protein [Brucella neotomae 5K33]
gi|256113120|ref|ZP_05453997.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3
str. Ether]
gi|256159300|ref|ZP_05457095.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
gi|256254610|ref|ZP_05460146.1| Peptidoglycan-binding domain 1 protein [Brucella ceti B1/94]
gi|256257111|ref|ZP_05462647.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 9
str. C68]
gi|256369017|ref|YP_003106525.1| peptidoglycan-binding protein, putative [Brucella microti CCM
4915]
gi|260168338|ref|ZP_05755149.1| peptidoglycan-binding protein, putative [Brucella sp. F5/99]
gi|260754347|ref|ZP_05866695.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6
str. 870]
gi|260757566|ref|ZP_05869914.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4
str. 292]
gi|260761391|ref|ZP_05873734.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260883372|ref|ZP_05894986.1| peptidoglycan binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|261218577|ref|ZP_05932858.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|261221785|ref|ZP_05936066.1| peptidoglycan binding domain-containing protein [Brucella ceti
B1/94]
gi|261315200|ref|ZP_05954397.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M163/99/10]
gi|261317243|ref|ZP_05956440.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
B2/94]
gi|261320574|ref|ZP_05959771.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
gi|261324701|ref|ZP_05963898.1| peptidoglycan binding domain-containing protein [Brucella
neotomae 5K33]
gi|261751911|ref|ZP_05995620.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
gi|261754569|ref|ZP_05998278.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
686]
gi|265988282|ref|ZP_06100839.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M292/94/1]
gi|265990698|ref|ZP_06103255.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. Rev.1]
gi|265994530|ref|ZP_06107087.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|265997749|ref|ZP_06110306.1| peptidoglycan binding domain-containing protein [Brucella ceti
M490/95/1]
gi|297247958|ref|ZP_06931676.1| peptidoglycan-binding protein [Brucella abortus bv. 5 str. B3196]
gi|23347371|gb|AAN29509.1| peptidoglycan-binding protein, putative [Brucella suis 1330]
gi|82615575|emb|CAJ10558.1| Putative peptidoglycan binding domain 1 [Brucella melitensis
biovar Abortus 2308]
gi|148371771|gb|ABQ61750.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840]
gi|161335364|gb|ABX61669.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC
23365]
gi|189019374|gb|ACD72096.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19]
gi|225617920|gb|EEH14964.1| peptidoglycan-binding protein [Brucella ceti str. Cudo]
gi|225640472|gb|ACO00386.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC
23457]
gi|255999177|gb|ACU47576.1| peptidoglycan-binding protein, putative [Brucella microti CCM
4915]
gi|260667884|gb|EEX54824.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4
str. 292]
gi|260671823|gb|EEX58644.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260674455|gb|EEX61276.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6
str. 870]
gi|260872900|gb|EEX79969.1| peptidoglycan binding domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|260920369|gb|EEX87022.1| peptidoglycan binding domain-containing protein [Brucella ceti
B1/94]
gi|260923666|gb|EEX90234.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
gi|261293264|gb|EEX96760.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
gi|261296466|gb|EEX99962.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
B2/94]
gi|261300681|gb|EEY04178.1| peptidoglycan binding domain-containing protein [Brucella
neotomae 5K33]
gi|261304226|gb|EEY07723.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M163/99/10]
gi|261741664|gb|EEY29590.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
513]
gi|261744322|gb|EEY32248.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
686]
gi|262552217|gb|EEZ08207.1| peptidoglycan binding domain-containing protein [Brucella ceti
M490/95/1]
gi|262765643|gb|EEZ11432.1| peptidoglycan binding domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001482|gb|EEZ14057.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
str. Rev.1]
gi|264660479|gb|EEZ30740.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
M292/94/1]
gi|297175127|gb|EFH34474.1| peptidoglycan-binding protein [Brucella abortus bv. 5 str. B3196]
Length = 338
Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 63 LVVMGFVSANALWYQPEAHDAVFFRTR 89
>gi|163842856|ref|YP_001627260.1| peptidoglycan binding domain-containing protein [Brucella suis
ATCC 23445]
gi|163673579|gb|ABY37690.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445]
Length = 338
Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 63 LVVMGFVSANALWYQPEAHDAVFFRTR 89
>gi|306845192|ref|ZP_07477768.1| peptidoglycan binding domain-containing protein [Brucella sp.
BO1]
gi|306274351|gb|EFM56158.1| peptidoglycan binding domain-containing protein [Brucella sp.
BO1]
Length = 338
Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 63 LVVMGFVSANALWYQPEAHDAVFFRTR 89
>gi|254693344|ref|ZP_05155172.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3
str. Tulya]
gi|261213593|ref|ZP_05927874.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3
str. Tulya]
gi|260915200|gb|EEX82061.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3
str. Tulya]
Length = 338
Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 63 LVVMGFVSANALWYQPEAHDAVFFRTR 89
>gi|254718729|ref|ZP_05180540.1| Peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
gi|265983705|ref|ZP_06096440.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
gi|306838707|ref|ZP_07471542.1| peptidoglycan binding domain-containing protein [Brucella sp. NF
2653]
gi|264662297|gb|EEZ32558.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
gi|306406194|gb|EFM62438.1| peptidoglycan binding domain-containing protein [Brucella sp. NF
2653]
Length = 338
Score = 40.9 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 63 LVVMGFVSANALWYQPEAHDAVFFRTR 89
>gi|90419110|ref|ZP_01227021.1| peptidoglycan-binding protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337190|gb|EAS50895.1| peptidoglycan-binding protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 249
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 LFFCWILSNALWNQTGKHPSPIFTTRHPQSY 33
+ F + NA+ +Q G HPSP TR P
Sbjct: 35 ILFGGVAINAM-HQPGPHPSPFLATREPGKG 64
>gi|319784577|ref|YP_004144053.1| peptidoglycan-binding domain 1 protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317170465|gb|ADV14003.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 265
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 7 WILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQHNKI 63
++ +NALW Q H F TR + + TF + + I
Sbjct: 48 YVSANALWYQPFPHAGAFFATR----SIAGFPHATPDEPE--TTFNIVRPSGAPAPI 98
>gi|239831438|ref|ZP_04679767.1| peptidoglycan binding domain-containing protein [Ochrobactrum
intermedium LMG 3301]
gi|239823705|gb|EEQ95273.1| peptidoglycan binding domain-containing protein [Ochrobactrum
intermedium LMG 3301]
Length = 123
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F TR
Sbjct: 47 LVVMSFVSANALWYQPEAHNAVFFRTR 73
>gi|153010008|ref|YP_001371223.1| peptidoglycan-binding domain-containing protein [Ochrobactrum
anthropi ATCC 49188]
gi|151561896|gb|ABS15394.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi
ATCC 49188]
Length = 328
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NALW Q H + F+TR
Sbjct: 47 LVVMSFVSANALWYQPEAHKAVFFSTR 73
>gi|328544565|ref|YP_004304674.1| peptidoglycan binding domain protein [polymorphum gilvum
SL003B-26A1]
gi|326414307|gb|ADZ71370.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 229
Score = 38.6 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 1 MFLFFCWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKV 53
M L C I++NA+ Q G+HP+P+ TR R + + T V
Sbjct: 22 MALTGCLIVANAVGLQPGRHPAPLLITR----ERPAAIA--TAEERTVATLPV 68
>gi|254501042|ref|ZP_05113193.1| Putative peptidoglycan binding domain protein [Labrenzia
alexandrii DFL-11]
gi|222437113|gb|EEE43792.1| Putative peptidoglycan binding domain protein [Labrenzia
alexandrii DFL-11]
Length = 249
Score = 38.6 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 1 MFLFFCWILSNALWNQTGKHPSPIFTTRH 29
M L C I++NAL Q G+HP+P +TTR
Sbjct: 38 MGLTACLIVANALGLQPGRHPAPYYTTRD 66
>gi|110633235|ref|YP_673443.1| peptidoglycan binding domain-containing protein [Mesorhizobium
sp. BNC1]
gi|110284219|gb|ABG62278.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1]
Length = 266
Score = 38.6 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 2 FLFFCWILSNALWNQTGKHPSPIFTTR 28
+ ++ +NAL+ Q HPS +TR
Sbjct: 48 LVSLAFVSANALFYQPQVHPSAFLSTR 74
>gi|13476355|ref|NP_107925.1| hypothetical protein mlr7650 [Mesorhizobium loti MAFF303099]
gi|14027116|dbj|BAB54070.1| mlr7650 [Mesorhizobium loti MAFF303099]
Length = 270
Score = 36.7 bits (83), Expect = 1.00, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 7 WILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH 60
++ +NALW Q H F TR+ F G S + T + +
Sbjct: 48 YVSANALWYQPFPHAGAFFATRN------FQGFPHTASDEPETTINIVRPNAAP 95
>gi|260462409|ref|ZP_05810617.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium
opportunistum WSM2075]
gi|259031903|gb|EEW33171.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium
opportunistum WSM2075]
Length = 278
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 7 WILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQHNKI 63
++ +NALW Q H F TR F G + + T + + I
Sbjct: 48 YVSANALWYQPFPHAGAFFATRS------FQGFPHTATDEPETTINIVRPNAAPAPI 98
>gi|323137203|ref|ZP_08072282.1| Peptidoglycan-binding domain 1 protein [Methylocystis sp. ATCC
49242]
gi|322397561|gb|EFY00084.1| Peptidoglycan-binding domain 1 protein [Methylocystis sp. ATCC
49242]
Length = 238
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 8 ILSNALWNQTGKHPSPIFTTRHPQSYRIFLGS 39
+ NAL+ Q G+HP+P+F+T P + + +
Sbjct: 63 VPMNALFFQDGRHPAPLFSTHLPVAEKTETAA 94
>gi|170751051|ref|YP_001757311.1| peptidoglycan binding domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170657573|gb|ACB26628.1| Peptidoglycan-binding domain 1 protein [Methylobacterium
radiotolerans JCM 2831]
Length = 241
Score = 35.2 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 CWILSNALWNQTGKHPSPIF 25
++ NAL QTG+HP+PI
Sbjct: 63 GFVCVNALGYQTGRHPAPIL 82
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.301 0.124 0.341
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,548,783
Number of Sequences: 14124377
Number of extensions: 11836425
Number of successful extensions: 46771
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 46712
Number of HSP's gapped (non-prelim): 46
length of query: 78
length of database: 4,842,793,630
effective HSP length: 49
effective length of query: 29
effective length of database: 4,150,699,157
effective search space: 120370275553
effective search space used: 120370275553
T: 11
A: 40
X1: 16 ( 6.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.8 bits)
S2: 75 (33.6 bits)