RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781015|ref|YP_003065428.1| hypothetical protein
CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>gnl|CDD|128336 smart00020, Tryp_SPc, Trypsin-like serine protease.  Many of
          these are synthesised as inactive precursor zymogens
          that are cleaved during limited proteolysis to generate
          their active forms. A few, however, are active as
          single chain molecules, and others are inactive due to
          substitutions of the catalytic triad residues.
          Length = 229

 Score = 28.0 bits (63), Expect = 0.56
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 6  CWILSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQHNKILL 65
           W+L+ A       H         P + R+ LGS    S ++G   KV KV   H     
Sbjct: 36 RWVLTAA-------HC---VYGSDPSNIRVRLGSHDLSSGEEGQVIKVSKVI-IHPN--- 81

Query: 66 KEYSSDNNNN 75
            Y+    +N
Sbjct: 82 --YNPSTYDN 89


>gnl|CDD|181819 PRK09395, actP, acetate permease; Provisional.
          Length = 551

 Score = 26.5 bits (59), Expect = 1.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 8   ILSNALWNQTGKHPSPIFTTRHP 30
           ILS  +W     H   IF   +P
Sbjct: 479 ILSPTVWVDILGHEKAIFPYEYP 501


>gnl|CDD|179879 PRK04792, tolB, translocation protein TolB; Provisional.
          Length = 448

 Score = 26.1 bits (58), Expect = 2.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)

Query: 14  WNQTGKHPSPIFTTRH---PQSYRIFLGSGS 41
           W+  GK  S IFT+     PQ YR+ L SG 
Sbjct: 313 WHPDGK--SLIFTSERGGKPQIYRVNLASGK 341


>gnl|CDD|178107 PLN02489, PLN02489, homocysteine S-methyltransferase.
          Length = 335

 Score = 25.7 bits (57), Expect = 2.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   FCWILSNALWNQTGKHPS--PIFTTRHPQSYRIFLGSGSEVSKDKGITFKVEKVGDQH 60
           F         ++ G+  S  PI       SY  +L  GSE S D G +  +EK+ D H
Sbjct: 112 FWDKCQKGSTSRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFH 169


>gnl|CDD|151526 pfam11081, DUF2890, Protein of unknown function (DUF2890).  This
           family is conserved in dsDNA adenoviruses of
           vertebrates. The function is not known.
          Length = 172

 Score = 24.5 bits (53), Expect = 5.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 14  WNQTGKHPSP 23
           W+QTG+ P+P
Sbjct: 93  WDQTGRFPNP 102


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,203,314
Number of extensions: 57903
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 8
Length of query: 78
Length of database: 5,994,473
Length adjustment: 48
Effective length of query: 30
Effective length of database: 4,957,289
Effective search space: 148718670
Effective search space used: 148718670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.0 bits)