RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781015|ref|YP_003065428.1| hypothetical protein CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62] (78 letters) >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 26.8 bits (59), Expect = 1.2 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%) Query: 8 ILSNALWNQ-TGKHPSPIFTTRHPQSYR 34 IL+ A + + K+ SP YR Sbjct: 6 ILTTAREHHSSVKYASPNLNM----KYR 29 >1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:) Length = 74 Score = 23.9 bits (52), Expect = 8.3 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 4/26 (15%) Query: 7 WILSNALWNQTGKHPSPIFTTRHPQS 32 I++NAL P I+ +R+ Sbjct: 52 QIIANAL----ETKPEVIWPSRYQAG 73 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.135 0.419 Gapped Lambda K H 0.267 0.0606 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 568,056 Number of extensions: 19691 Number of successful extensions: 48 Number of sequences better than 10.0: 1 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 2 Length of query: 78 Length of database: 4,956,049 Length adjustment: 43 Effective length of query: 35 Effective length of database: 3,502,434 Effective search space: 122585190 Effective search space used: 122585190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.3 bits)