RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781015|ref|YP_003065428.1| hypothetical protein
CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2pff_A Fatty acid synthase subunit alpha,
          3-oxoacyl-[acyl-carrier-; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)

Query: 8  ILSNALWNQ-TGKHPSPIFTTRHPQSYR 34
          IL+ A  +  + K+ SP         YR
Sbjct: 6  ILTTAREHHSSVKYASPNLNM----KYR 29


>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU}
          (A:)
          Length = 74

 Score = 23.9 bits (52), Expect = 8.3
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 4/26 (15%)

Query: 7  WILSNALWNQTGKHPSPIFTTRHPQS 32
           I++NAL       P  I+ +R+   
Sbjct: 52 QIIANAL----ETKPEVIWPSRYQAG 73


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 568,056
Number of extensions: 19691
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 4,956,049
Length adjustment: 43
Effective length of query: 35
Effective length of database: 3,502,434
Effective search space: 122585190
Effective search space used: 122585190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)