RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781015|ref|YP_003065428.1| hypothetical protein
CLIBASIA_04585 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 38/80 (47%)

Query: 2   FLFFCWI-----------------LSNALWNQTGKHPSPIFTTRHPQSYRIFLGSGSEVS 44
            LF  +I                 L ++L N  G  PSP+ +  +             ++
Sbjct: 302 VLF--FIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPMLSISN-------------LT 345

Query: 45  KDKGITFKVEKVGDQHNKIL 64
           +++     V+   ++ N  L
Sbjct: 346 QEQ-----VQDYVNKTNSHL 360


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 6/22 (27%)

Query: 54 EKVGDQHNKIL---LKEYSSDN 72
          EK   Q  K L   LK Y+ D+
Sbjct: 18 EK---QALKKLQASLKLYADDS 36


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 654,467
Number of extensions: 23557
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 78
Length of database: 5,693,230
Length adjustment: 47
Effective length of query: 31
Effective length of database: 4,553,762
Effective search space: 141166622
Effective search space used: 141166622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)