HHsearch alignment for GI: 254781016 and conserved domain: COG1685
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism].
Probab=98.95 E-value=4.3e-07 Score=69.95 Aligned_cols=223 Identities=16% Similarity=0.231 Sum_probs=128.6
Q ss_pred CCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7810799997178885799878725665206899999974216761943--99998502332110123224799999999
Q gi|254781016|r 59 HLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVY--FLIETSNNIPTKAGLASSASGFAALTLAL 136 (355)
Q Consensus 59 ~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~~--~~I~S~N~fPtaaGLASSASgfAALa~Al 136 (355)
T Consensus 28 dL~v~a~v~~~~----~~~~~~~~~~d----~~li~~~~~~v~e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~ 99 (278)
T COG1685 28 DLKVEAEVRLSD----EGKVRGEPEGD----TRLIERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAV 99 (278)
T ss_pred CCEEEEEEEECC----CCCCCCCCCCC----HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 445899999857----65313677787----4799999999998729886559998257876667424589999999999
Q ss_pred HHHHCCCCCHHHHHHHH---HHCCC--------CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCC
Q ss_conf 99818899988999886---52135--------30343105620025789876544131015666864215899972876
Q gi|254781016|r 137 FRIYSIPEKSESLSRVA---RLGSG--------SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDRE 205 (355)
Q Consensus 137 ~~~~~~~~~~~~lS~lA---RlGSG--------SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~ 205 (355)
T Consensus 100 ~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iTDN-------~~m~Ilrr~~~~~~~vlI~~p--~~ 170 (278)
T COG1685 100 LKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVITDN-------RKMRILRRLDLPELTVLILAP--GE 170 (278)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCEEEECC-------HHHEEHHCCCCCCCEEEEEEC--CC
T ss_conf 997189888148888777988745944741406889997588688616-------111000003467740899816--87
Q ss_pred CCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 67521056798876185689999730550999999998099999999999999989998703899568657889999999
Q gi|254781016|r 206 KKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMER 285 (355)
Q Consensus 206 K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~ 285 (355)
T Consensus 171 k~~~~~vdv~~~r~~a~~~e~A~~lA-----------~~G~~~--------~Am~lNG~~y~~a--LG~----~~e---~ 222 (278)
T COG1685 171 KRLSANVDVNRLRLIAPVVEEAFRLA-----------LKGEYF--------KAMVLNGILYCSA--LGY----DLE---P 222 (278)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH-----------HCCCHH--------HHHHHHHHHHHHH--HCC----CHH---H
T ss_conf 65255478789877438999999998-----------535288--------8888767998987--089----828---9
Q ss_pred HHHHHHCC-CEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCC
Q ss_conf 99974289-619999777981799955898999999976321003
Q gi|254781016|r 286 VWDARQQS-IPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITIID 329 (355)
Q Consensus 286 v~~~R~~g-~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~~ 329 (355)
T Consensus 223 ~~~ale~GA~~aglS-GtGPa~~Al~~~~--~~v~ea~~~~G~V~ 264 (278)
T COG1685 223 ALKALEAGAAAAGLS-GTGPAYFALTEDP--EEVAEAWSKIGDVI 264 (278)
T ss_pred HHHHHHCCCCEECCC-CCCCCEEEEECCC--HHHHHHHHHCCEEE
T ss_conf 999986354064357-8897169995493--78999998678699