HHsearch alignment for GI: 254781016 and conserved domain: COG3407
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism].
Probab=100.00 E-value=0 Score=647.01 Aligned_cols=300 Identities=41% Similarity=0.657 Sum_probs=279.3
Q ss_pred CEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEE-EECCC-CCCEEEECCEECCCCCHHHHHHHHHHHHH
Q ss_conf 37897488424881167767011757898434681278107999-97178-88579987872566520689999997421
Q gi|254781016|r 23 KSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHI-TVIDS-DADCIILNGQKISSQSSFFKKTTQFCDLF 100 (355)
Q Consensus 23 ~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v-~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l~~~ 100 (355)
T Consensus 5 ~~t~~ay~nialIKywGk~D~~l~iP~~~SiS~t~~df~t~t~~~~~~~~~~~D~~~lNG~~~~~~---~~k~~~~ld~~ 81 (329)
T COG3407 5 IITASAYPNIALIKYWGKRDEALNIPLNSSISVTLEDFSTTTTAEELTENDEEDTFILNGELSEDE---NEKARRVLDRF 81 (329)
T ss_pred CEEEEECCHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEECCCCCCHH---HHHHHHHHHHH
T ss_conf 513673523378776142316424778880478841444336778753788762799988227157---89999999999
Q ss_pred HHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCC
Q ss_conf 67619--4399998502332110123224799999999998188999889998865213530343105620025789876
Q gi|254781016|r 101 RQFSK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQN 178 (355)
Q Consensus 101 r~~~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~ 178 (355)
T Consensus 82 R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~W~~~~--- 158 (329)
T COG3407 82 RKEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFGGFVLWEKGE--- 158 (329)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCEEEECCCC---
T ss_conf 87635466079997457876345210188999999999765244788799999987752411454228866730688---
Q ss_pred CCCEEEEEC--CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 544131015--666864215899972876675210567988761856899997305509999999980999999999999
Q gi|254781016|r 179 GMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355)
Q Consensus 179 ~sds~a~~~--~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355)
T Consensus 159 g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~~~~~~~~m~~~~~~~Df~~i~~~~e~ 238 (329)
T COG3407 159 GEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEHSEEDLEEMKEAIREKDFEKIGELAEN 238 (329)
T ss_pred CCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 87521012023467623142799974556778736877777770727899999888759999999861479999999986
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCC
Q ss_conf 999899987038995686578899999999997428961999977798179995589899999997632100
Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITII 328 (355)
Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~ 328 (355)
T Consensus 239 dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGPnV~v~~~~~~l~~~~~~~~~~~~~ 310 (329)
T COG3407 239 DSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGPNVKVITLEENLIDLLEILKTLECI 310 (329)
T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 599999998456996399883189999999998733884699972799659997215489999987313565