HHsearch alignment for GI: 254781016 and conserved domain: PRK00343
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=98.49 E-value=1.3e-05 Score=59.65 Aligned_cols=248 Identities=18% Similarity=0.163 Sum_probs=134.1
Q ss_pred EEECCC--CEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEEC--CCCCHHHHHHHHHHHHH
Q ss_conf 897488--42488116776701175789843468127810799997178885799878725--66520689999997421
Q gi|254781016|r 25 SAFLPS--NIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKI--SSQSSFFKKTTQFCDLF 100 (355)
Q Consensus 25 ta~ap~--NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~--~~~~~~~~ri~~~l~~~ 100 (355)
T Consensus 4 ~~~aPAKINL~L-~V~~kr~DG--yH~i~Sl~~~i-dl~D~i~i~~--~~~~~i~~~~~~~~i~~~~---Nlv~ka~~~l 74 (279)
T PRK00343 4 DWPAPAKLNLFL-HITGRRADG--YHELQTLFQFL-DYGDTLHFEP--RDDGQIRLLTEIPGVPEED---NLIVRAARLL 74 (279)
T ss_pred CCCCCEEEEECC-CCCCCCCCC--CCEEEEEEEEC-CCCCEEEEEE--CCCCCEEEECCCCCCCCCC---CHHHHHHHHH
T ss_conf 636500273032-238708999--86257899982-7883999999--8899689946877798647---5999999999
Q ss_pred HHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCC
Q ss_conf 676194--399998502332110123224799999999998188999889998865213530343105620025789876
Q gi|254781016|r 101 RQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQN 178 (355)
Q Consensus 101 r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~ 178 (355)
T Consensus 75 ~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l~~l~ls~~~l~~ia~~l-GaDVPffl~~~~a~~~G~Ge~ 153 (279)
T PRK00343 75 QKATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAALGLKL-GADVPVFVRGHAAFAEGVGEK 153 (279)
T ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCEEEEECCCCEEEEECCCE
T ss_conf 9986999974999996587635678887128999999999746678999999998751-897777860876899806868
Q ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 54413101566686421589997287667521056798876185689999730550999999998099999999999999
Q gi|254781016|r 179 GMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA 258 (355)
Q Consensus 179 ~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~da 258 (355)
T Consensus 154 l---~~~~~----~~~~--~llv~P~--~~vST~~vf~----~~~l-~~-~~~~~~~~~~~~~~~~NDL----------- 205 (279)
T PRK00343 154 L---TPVEL----PEKW--YLVVKPG--VHVSTAEIFS----DPEL-TR-DTPKRTIADFLAGPGRNDC----------- 205 (279)
T ss_pred E---EECCC----CCCE--EEEECCC--CCCCHHHHHH----CCCC-CC-CCCCCCHHHHHHCHHCCCH-----------
T ss_conf 7---77567----8747--9998799--9956199983----8245-54-7730069999843121858-----------
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHHC
Q ss_conf 98999870389956865788999999999974289619999777981799955-89899999997632
Q gi|254781016|r 259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPEI 325 (355)
Q Consensus 259 l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i 325 (355)
T Consensus 206 ---e~~a~~~~-------PeI~~~~---~~L~~~~-~~~MS-GSGSt~Fglf~~~~~A~~a~~~l~~~ 258 (279)
T PRK00343 206 ---EPVVRKRY-------PEVAQAL---SWLLEYA-PARMT-GTGACVFAEFDTEAEAEAVLAQLPEG 258 (279)
T ss_pred ---HHHHHHHC-------HHHHHHH---HHHHHCC-CCEEE-CCCCEEEEEECCHHHHHHHHHHCCCC
T ss_conf ---99998869-------8999999---9986028-87465-42225889979999999999864744