HHsearch alignment for GI: 254781016 and conserved domain: PRK00650
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=98.46 E-value=3.5e-05 Score=56.60 Aligned_cols=235 Identities=15% Similarity=0.148 Sum_probs=127.6
Q ss_pred CCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECC-EECCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 48842488116776701175789843468127810799997178885799878-72566520689999997421676194
Q gi|254781016|r 28 LPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNG-QKISSQSSFFKKTTQFCDLFRQFSKV 106 (355)
Q Consensus 28 ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG-~~~~~~~~~~~ri~~~l~~~r~~~~~ 106 (355)
T Consensus 7 AKINL~L-~V~~kr~DG--YH~l~Sl~~~id-l~D~i~i~--~~~~~~~~~~~~~~~~~~~---Nli~kA~~~l~~~~~~ 77 (288)
T PRK00650 7 AKLNLFL-QLLGKREDG--FHEIVTRYQAID-FGDQLSLS--ISSRDSLQVINLCELETPQ---NSIWKSVALFRDYTGI 77 (288)
T ss_pred EEEECCC-CCCCCCCCC--CCEEEEEEEEEC-CCCEEEEE--ECCCCCEEEECCCCCCCCH---HHHHHHHHHHHHHHCC
T ss_conf 1073250-458879999--881579999967-89899999--8899968983898789945---6999999999997499
Q ss_pred --EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEE
Q ss_conf --399998502332110123224799999999998188999889998865213530343105620025789876544131
Q gi|254781016|r 107 --YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFA 184 (355)
Q Consensus 107 --~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a 184 (355)
T Consensus 78 ~~~~~I~l~KnIPvgAGLGGGSSnAAavL~~Ln~l~~l~l~~~~L~~ia~~lGADVPffl~~~~a~-~~G~GE~---i-- 151 (288)
T PRK00650 78 TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQHFQTGLSDEELRSLAEKIGMDTPFFFSSGSAL-GVGRGEK---I-- 151 (288)
T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECCCCEE-EEECCCE---E--
T ss_conf 987379999579765567610378999999999985589899999999987299814075387589-9937967---7--
Q ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01566686421589997287667521056798876185689999730550999999998099999999999999989998
Q gi|254781016|r 185 VPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHAT 264 (355)
Q Consensus 185 ~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~ 264 (355)
T Consensus 152 ~~l~~~-~~~~~vLv~--p~-~~vsT~~v-f~~~~~~~~-~-----~~~~---l~~--~~NDL--------------E~~ 201 (288)
T PRK00650 152 LALEES-VSDRYVLYF--SD-QGVLTSDA-FAYVQPSDC-S-----SRKN---LEY--TQNDL--------------EKP 201 (288)
T ss_pred EECCCC-CCCEEEEEC--CC-CCCCCHHH-HHHCCCCCC-C-----HHHH---HHH--CCCCC--------------HHH
T ss_conf 788767-765199991--99-89776698-750491006-6-----3666---654--58978--------------899
Q ss_pred HHCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEEEEEECHHHH
Q ss_conf 703899568657889999999999742896-199997779817999558989
Q gi|254781016|r 265 MIAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNLKLLFTHKIE 315 (355)
Q Consensus 265 ~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv~il~~~~~~ 315 (355)
T Consensus 202 a~~~-------~P~i~~ik~~L~~l~a~~~~~~rMS-GSGstvFa~F~~~~e 245 (288)
T PRK00650 202 VFRL-------RLDLKEKKHWLESLWSPFPVHVGLT-GSGATLFVRYPRILE 245 (288)
T ss_pred HHHH-------CHHHHHHHHHHHHCCCCCCCEEEEE-CCCCEEEEEECCCCC
T ss_conf 9985-------9799999999996469877658887-313049999088110