HHsearch alignment for GI: 254781016 and conserved domain: PRK04181
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=98.21 E-value=0.00024 Score=50.80 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=87.0
Q ss_pred EECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC-CCCHHHHHHHHHHHHHHHHC
Q ss_conf 97488424881167767011757898434681278107999971788857998787256-65206899999974216761
Q gi|254781016|r 26 AFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS-SQSSFFKKTTQFCDLFRQFS 104 (355)
Q Consensus 26 a~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~-~~~~~~~ri~~~l~~~r~~~ 104 (355)
T Consensus 3 s~AKINL~L~V-~~kRd~-y-H~l-~s~~~~i~dl~D~i~i--~~~~~~~~~~~~~~~~~~~~N---lv~ka~~~l~~~~ 73 (254)
T PRK04181 3 SYAKVNIFLKI-TGKRGN-Y-HEL-ISRFVLVKDLFDEIEF--VDDSAKSFEIIGNFDCPLEEN---IIFKAYQELKSKG 73 (254)
T ss_pred CCCEECCCEEE-CCCCCC-C-CEE-EEEEEEHHHCCEEEEE--EECCCCCEEEECCCCCCCCCC---HHHHHHHHHHHHC
T ss_conf 76537674357-753499-8-732-5477782008579999--988999589978888885415---9999999998753
Q ss_pred ------C--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCC
Q ss_conf ------9--43999985023321101232247999999999981889998899988652135303431056200257898
Q gi|254781016|r 105 ------K--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTD 176 (355)
Q Consensus 105 ------~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~ 176 (355)
T Consensus 74 ~~~~~~~~~~~~~I~l~KnIP~gAGLGGGSSdAAa~L~~l~~~~~l~ls~~~L~~ia~~lGaDVPffl~g~~~a~~~G~G 153 (254)
T PRK04181 74 FSNELIEFFSKLAIEVTKNIPTGAGLGGGSSNAATFLLMANEILNLKLSLEELINIGSKIGADVAFFISGYKSANVSGIG 153 (254)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECCCCEEEEECCC
T ss_conf 32343113664179995257665678874668999999999982899999999998753189824497578637887577
Q ss_pred C
Q ss_conf 7
Q gi|254781016|r 177 Q 177 (355)
Q Consensus 177 ~ 177 (355)
T Consensus 154 e 154 (254)
T PRK04181 154 E 154 (254)
T ss_pred C
T ss_conf 3