Query gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 128 out of 512 Neff 5.8 Searched_HMMs 39220 Date Mon May 30 04:29:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781016.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01240 mevDPdecarb diphosph 100.0 0 0 725.8 26.4 300 24-325 1-323 (325) 2 KOG2833 consensus 100.0 0 0 679.9 31.6 307 18-324 2-327 (395) 3 COG3407 MVD1 Mevalonate pyroph 100.0 0 0 647.0 29.5 300 23-328 5-310 (329) 4 COG0083 ThrB Homoserine kinase 99.7 2.6E-14 6.6E-19 120.4 22.2 252 45-324 14-274 (299) 5 PRK01212 homoserine kinase; Pr 99.7 5.2E-14 1.3E-18 118.3 18.9 249 47-326 16-275 (293) 6 PRK01123 shikimate kinase; Pro 99.6 2.3E-12 5.8E-17 106.9 20.5 228 59-329 28-270 (283) 7 PRK00128 ipk 4-diphosphocytidy 99.4 1.7E-09 4.2E-14 86.8 24.5 260 28-325 7-270 (281) 8 PTZ00299 homoserine kinase; Pr 99.4 7.2E-11 1.8E-15 96.4 17.3 292 20-346 4-329 (336) 9 PTZ00298 mevalonate kinase; Pr 99.4 1E-09 2.6E-14 88.3 23.0 212 107-343 94-323 (328) 10 PRK04344 consensus 99.4 4.3E-09 1.1E-13 84.0 24.0 267 23-325 2-272 (284) 11 PRK03188 4-diphosphocytidyl-2- 99.3 1.1E-09 2.7E-14 88.2 20.5 270 25-327 4-279 (299) 12 PRK03926 mevalonate kinase; Pr 99.3 9.7E-09 2.5E-13 81.5 24.2 261 24-327 3-285 (302) 13 COG1577 ERG12 Mevalonate kinas 99.3 8.2E-09 2.1E-13 82.0 22.5 253 51-328 22-298 (307) 14 TIGR00191 thrB homoserine kina 99.2 8.5E-10 2.2E-14 88.9 14.6 263 48-324 14-333 (359) 15 PRK03817 galactokinase; Provis 99.2 5.5E-07 1.4E-11 69.2 27.0 288 25-340 2-342 (351) 16 PRK02534 4-diphosphocytidyl-2- 99.2 1.4E-07 3.5E-12 73.4 23.9 283 24-340 6-298 (308) 17 TIGR00549 mevalon_kin mevalona 99.1 1.9E-08 4.8E-13 79.4 16.1 191 91-304 112-338 (345) 18 COG1685 Archaeal shikimate kin 99.0 4.3E-07 1.1E-11 69.9 18.6 223 59-329 28-264 (278) 19 TIGR01920 Shik_kin_archae shik 98.9 9.8E-07 2.5E-11 67.5 20.1 227 59-328 23-270 (273) 20 PRK00555 galactokinase; Provis 98.9 1.6E-05 4E-10 59.0 28.9 275 22-325 1-339 (363) 21 PRK05322 galactokinase; Provis 98.7 4.7E-05 1.2E-09 55.7 27.7 302 4-325 2-364 (387) 22 PRK13412 fkp bifunctional fuco 98.7 1.8E-05 4.6E-10 58.6 19.9 228 104-349 723-970 (974) 23 PRK05905 hypothetical protein; 98.7 1.9E-05 4.9E-10 58.5 19.8 251 23-313 2-256 (258) 24 COG1907 Predicted archaeal sug 98.7 3.9E-05 1E-09 56.3 20.9 248 50-319 25-282 (312) 25 PRK03009 consensus 98.6 1.1E-05 2.8E-10 60.2 17.3 254 30-324 11-267 (287) 26 COG2605 Predicted kinase relat 98.6 6.6E-05 1.7E-09 54.7 20.6 220 107-339 89-332 (333) 27 COG0153 GalK Galactokinase [Ca 98.6 0.00011 2.7E-09 53.3 27.4 281 20-325 20-366 (390) 28 PRK04943 consensus 98.6 2.3E-05 6E-10 57.8 17.9 253 22-326 4-262 (288) 29 PRK00343 ipk 4-diphosphocytidy 98.5 1.3E-05 3.3E-10 59.7 14.4 248 25-325 4-258 (279) 30 PRK00650 4-diphosphocytidyl-2- 98.5 3.5E-05 9E-10 56.6 15.9 235 28-315 7-245 (288) 31 PRK04648 consensus 98.4 1.1E-05 2.7E-10 60.3 13.0 242 27-324 18-271 (295) 32 COG1947 IspE 4-diphosphocytidy 98.4 4.2E-05 1.1E-09 56.0 16.0 261 23-324 3-271 (289) 33 PRK05101 galactokinase; Provis 98.4 0.00028 7.1E-09 50.3 30.7 310 10-338 9-372 (382) 34 TIGR01220 Pmev_kin_Gr_pos phos 98.4 5E-05 1.3E-09 55.5 15.9 274 46-327 18-356 (367) 35 PRK01726 consensus 98.4 0.00021 5.4E-09 51.2 18.8 251 25-326 25-278 (312) 36 PRK04181 4-diphosphocytidyl-2- 98.2 0.00024 6.1E-09 50.8 15.4 143 26-177 3-154 (254) 37 PRK03288 consensus 98.2 0.00044 1.1E-08 48.9 16.4 245 27-324 8-263 (283) 38 KOG1511 consensus 98.1 0.0013 3.3E-08 45.6 18.5 100 108-219 132-251 (397) 39 pfam00288 GHMP_kinases_N GHMP 97.8 2.8E-05 7E-10 57.3 4.9 48 110-157 2-49 (67) 40 COG1829 Predicted archaeal kin 97.8 0.0044 1.1E-07 41.9 18.4 180 49-256 25-212 (283) 41 TIGR00154 ispE 4-diphosphocyti 97.7 0.0028 7.2E-08 43.3 13.3 239 62-327 40-304 (322) 42 COG4542 PduX Protein involved 97.1 0.032 8.2E-07 35.9 14.4 184 108-315 84-267 (293) 43 pfam08544 GHMP_kinases_C GHMP 96.4 0.021 5.4E-07 37.2 7.7 75 239-325 2-79 (82) 44 PTZ00290 galactokinase; Provis 96.3 0.12 3.1E-06 31.8 20.1 152 4-155 17-199 (468) 45 KOG1537 consensus 96.0 0.095 2.4E-06 32.6 9.1 200 107-327 94-336 (355) 46 TIGR00131 gal_kin galactokinas 95.0 0.21 5.4E-06 30.2 8.1 139 8-148 4-170 (500) 47 COG3890 ERG8 Phosphomevalonate 94.5 0.48 1.2E-05 27.7 13.9 279 24-331 4-325 (337) 48 TIGR00144 beta_RFAP_syn beta-r 91.6 1.3 3.2E-05 24.8 15.5 280 30-324 9-316 (337) 49 TIGR02734 crtI_fam phytoene de 74.9 3.2 8.1E-05 22.0 3.0 10 260-269 191-200 (526) 50 KOG0631 consensus 73.8 7.4 0.00019 19.4 7.2 61 106-166 141-213 (489) 51 KOG4644 consensus 72.6 7.9 0.0002 19.2 14.9 217 96-324 680-921 (948) 52 cd06454 KBL_like KBL_like; thi 57.0 15 0.00039 17.2 5.9 73 254-326 259-349 (349) 53 TIGR00674 dapA dihydrodipicoli 56.2 16 0.0004 17.1 5.0 40 231-270 209-248 (288) 54 pfam10673 DUF2487 Protein of u 54.2 15 0.00037 17.3 3.1 46 264-311 52-111 (143) 55 PRK05912 tyrosyl-tRNA syntheta 53.8 17 0.00044 16.9 4.1 63 194-256 213-277 (402) 56 KOG4520 consensus 47.9 19 0.00049 16.5 2.9 17 155-171 115-131 (238) 57 TIGR01122 ilvE_I branched-chai 45.8 9 0.00023 18.8 1.0 25 292-319 29-53 (302) 58 PRK03659 glutathione-regulated 43.2 25 0.00063 15.7 3.0 96 247-354 408-537 (602) 59 TIGR02397 dnaX_nterm DNA polym 42.7 25 0.00064 15.7 6.9 102 58-171 71-224 (363) 60 TIGR01219 Pmev_kin_ERG8 phosph 41.7 19 0.00049 16.5 2.1 137 118-256 178-362 (499) 61 TIGR01325 O_suc_HS_sulf O-succ 41.7 19 0.00048 16.6 2.1 111 182-305 177-311 (386) 62 PRK08745 ribulose-phosphate 3- 39.5 28 0.00071 15.4 2.9 74 263-353 136-212 (223) 63 PRK08883 ribulose-phosphate 3- 39.5 28 0.00071 15.4 2.9 42 264-305 133-177 (220) 64 pfam12017 Transposase_37 Trans 38.0 8.5 0.00022 19.0 -0.2 45 277-327 165-210 (236) 65 PRK06039 ileS isoleucyl-tRNA s 37.5 27 0.0007 15.4 2.4 25 231-255 884-908 (1042) 66 PRK05581 ribulose-phosphate 3- 37.1 30 0.00077 15.1 3.1 44 263-306 135-181 (220) 67 PRK03562 glutathione-regulated 36.9 30 0.00078 15.1 3.1 86 264-354 417-536 (615) 68 KOG4743 consensus 35.7 12 0.00031 17.9 0.4 11 158-168 16-26 (195) 69 PTZ00170 D-ribulose-5-phosphat 34.5 29 0.00075 15.2 2.1 42 264-306 140-181 (224) 70 PRK12864 YciI-like protein; Re 33.3 35 0.00088 14.7 3.9 43 283-325 26-69 (89) 71 TIGR01239 galT_2 galactose-1-p 33.0 20 0.00051 16.4 1.1 52 67-118 209-273 (502) 72 cd07922 CarBa CarBa is the A s 32.8 34 0.00086 14.8 2.2 48 221-268 16-70 (81) 73 COG1541 PaaK Coenzyme F390 syn 32.6 35 0.0009 14.6 2.7 19 121-139 185-203 (438) 74 PRK13193 pyrrolidone-carboxyla 32.3 25 0.00064 15.7 1.5 33 273-307 110-142 (201) 75 KOG3282 consensus 32.0 36 0.00092 14.6 6.4 39 267-305 122-160 (190) 76 TIGR03266 methan_mark_1 putati 32.0 36 0.00093 14.6 6.4 16 247-262 167-182 (376) 77 TIGR03604 docking_ocin bacteri 31.9 36 0.00093 14.6 7.0 27 115-141 109-135 (377) 78 PRK00068 hypothetical protein; 31.8 37 0.00093 14.5 4.9 33 224-256 934-966 (978) 79 pfam04788 DUF620 Protein of un 31.6 9.8 0.00025 18.5 -0.7 63 158-239 24-87 (242) 80 TIGR01163 rpe ribulose-phospha 31.6 37 0.00094 14.5 3.9 144 191-354 39-213 (216) 81 pfam07014 Hs1pro-1_C Hs1pro-1 31.3 37 0.00095 14.5 5.7 54 211-265 47-109 (261) 82 TIGR02683 upstrm_HI1419 probab 31.1 23 0.00059 15.9 1.2 69 218-310 3-74 (95) 83 pfam01522 Polysacc_deac_1 Poly 31.1 37 0.00096 14.5 2.8 15 270-284 102-116 (123) 84 PRK06606 branched-chain amino 30.8 30 0.00077 15.1 1.7 42 72-116 5-46 (306) 85 pfam06434 Aconitase_2_N Aconit 30.7 32 0.00083 14.9 1.9 22 155-177 63-84 (204) 86 KOG3262 consensus 30.6 38 0.00097 14.4 2.5 68 10-81 57-130 (215) 87 KOG0616 consensus 30.1 35 0.00089 14.7 1.9 85 198-302 183-268 (355) 88 PRK13354 tyrosyl-tRNA syntheta 29.3 40 0.001 14.3 4.2 62 195-256 218-281 (405) 89 PRK13195 pyrrolidone-carboxyla 28.5 32 0.00081 15.0 1.5 24 283-306 122-145 (222) 90 pfam11159 DUF2939 Protein of u 26.1 45 0.0012 13.9 3.0 33 219-260 10-42 (95) 91 PRK08005 ribulose-phosphate 3- 25.9 38 0.00097 14.4 1.5 21 333-353 184-204 (210) 92 COG4012 Uncharacterized protei 25.7 43 0.0011 14.0 1.8 19 292-311 236-254 (342) 93 cd01576 AcnB_Swivel Aconitase 25.5 46 0.0012 13.8 2.4 32 260-299 25-56 (131) 94 PRK00125 pyrF orotidine 5'-pho 25.1 17 0.00043 16.9 -0.4 21 311-331 197-217 (277) 95 TIGR01099 galU UTP-glucose-1-p 24.2 31 0.00079 15.1 0.8 37 94-141 81-120 (270) 96 COG3345 GalA Alpha-galactosida 23.7 32 0.00081 15.0 0.8 57 278-340 307-377 (687) 97 COG3603 Uncharacterized conser 23.5 51 0.0013 13.5 5.0 42 285-329 83-126 (128) 98 pfam12187 VirArc_Nuclease Vira 22.3 31 0.00078 15.1 0.5 34 277-310 141-178 (190) 99 PRK13194 pyrrolidone-carboxyla 22.2 43 0.0011 14.1 1.2 33 273-307 110-142 (204) 100 PRK12514 RNA polymerase sigma 22.2 54 0.0014 13.4 4.8 29 234-262 5-33 (179) 101 pfam11101 DUF2884 Protein of u 21.8 55 0.0014 13.3 7.0 82 72-165 30-113 (229) 102 COG3433 Aryl carrier domain [S 21.4 52 0.0013 13.5 1.5 23 276-298 28-50 (74) 103 PRK13728 conjugal transfer pro 21.4 55 0.0014 13.3 1.6 14 293-306 99-113 (181) 104 PRK10456 arginine succinyltran 21.3 56 0.0014 13.3 3.2 78 242-321 183-272 (344) 105 pfam07765 KIP1 KIP1-like prote 20.7 57 0.0015 13.2 2.5 41 215-256 7-47 (74) 106 PRK13196 pyrrolidone-carboxyla 20.7 53 0.0014 13.4 1.4 21 286-306 125-145 (212) 107 PRK08091 ribulose-phosphate 3- 20.6 57 0.0015 13.2 3.1 44 263-306 151-197 (235) No 1 >TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase; InterPro: IPR005935 Synonyms: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase. This group of enzymes belongs to the GHMP kinase domain superfamily. GHMP kinases are a unique class of ATP-dependent enzymes (the abbreviation of which refers to the original members: galactokinase, homoserine kinase, mevalonate kinase, and phosphomevalonate kinase) . Enzymes belonging to this superfamily contain three well-conserved motifs, the second of which has the typical sequence Pro-X-X-X-Gly-Leu-X-Ser-Ser-Ala and is involved in ATP binding . The phosphate binding loop in GHMP kinases is distinct from the classical P-loops found in many ATP/GTP binding proteins. The bound ADP molecule adopts a rare syn conformation and is in the opposite orientation from those bound to the P-loop-containing proteins . GHMP kinases display a distinctly bilobal appearance with their N-terminal subdomains dominated by a mixed beta-sheet flanked on one side by alpha-helices and their C-terminal subdomains containing a four stranded anti-parallel beta-sheet , , , . Diphosphomevalonate decarboxylase (mevalonate pyrophosphate decarboxylase, (4.1.1.33 from EC) catalyzes the decarboxylation of mevalonate pyrophosphate to isopentyl pyrophosphate (IPP) , the last step in the synthesis of IPP in the mevalonate pathway. Mevalonate is a key intermediate in the biosynthesis of sterols and non-sterol isoprenes in the mevalonate pathway. In mammals, the majority of mevalonate is converted into cholesterol.ATP + (R)-5-diphosphomevalonate = ADP + phosphate + isopentenyl diphosphate + CO2 ; GO: 0004163 diphosphomevalonate decarboxylase activity, 0008299 isoprenoid biosynthetic process. Probab=100.00 E-value=0 Score=725.81 Aligned_cols=300 Identities=39% Similarity=0.614 Sum_probs=283.6 Q ss_pred EEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECC--CCEEEEEE-ECCC-CCCEEEECCEECCCCCHHHHHHHHHHHH Q ss_conf 789748842488116776701175789843468127--81079999-7178-8857998787256652068999999742 Q gi|254781016|r 24 SSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGH--LGTITHIT-VIDS-DADCIILNGQKISSQSSFFKKTTQFCDL 99 (355) Q Consensus 24 ~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~--~~T~T~v~-~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l~~ 99 (355) ++++||.|||+||||||+|++++||.|+|||+||+. ++|+|+|. +.|. ..|+|||||.+++..+ .+||.++||. T Consensus 1 ~~vtay~NIA~iKYWGK~n~~l~lP~nsSiSlTL~~dd~~T~Tsv~f~~d~~~~D~fylnG~lq~~~~--~~k~s~~ld~ 78 (325) T TIGR01240 1 AKVTAYVNIALIKYWGKKNEKLILPTNSSISLTLEQDDLYTLTSVAFLADEFERDEFYLNGVLQDEKD--NEKVSNILDD 78 (325) T ss_pred CEEECCHHHEEHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCEEEECCCCCCHHH--HHHHHHHHHH T ss_conf 92214102000002576242114874564257634764302123356288631012477573787034--5589999998 Q ss_pred HHHHC--------------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHC Q ss_conf 16761--------------9439999850233211012322479999999999818899988999886521353034310 Q gi|254781016|r 100 FRQFS--------------KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFY 165 (355) Q Consensus 100 ~r~~~--------------~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~ 165 (355) +|+.. ..+++|+|+|||||||||||||||||||+.|++++|++++|..+||++||.||||||||+| T Consensus 79 fRq~~~~~~skdaslPtlsqWk~~~~s~Nn~PTAAGLaSSasGlaALv~A~~~l~~l~ld~~~lsr~Ar~gSGSacRS~F 158 (325) T TIGR01240 79 FRQEAKESESKDASLPTLSQWKVKVVSQNNVPTAAGLASSASGLAALVSACDKLYKLQLDDKELSRIARKGSGSACRSLF 158 (325) T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHC T ss_conf 62221122222125641000046788507862144466689999999999999970798878999886421673003205 Q ss_pred CCCHHCCCCCCCCCCCEEEEECCCC--CCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHH Q ss_conf 5620025789876544131015666--86421589997287667521056798876185689999730550-99999999 Q gi|254781016|r 166 RGFCEWICGTDQNGMDSFAVPFNNQ--WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTD-LAHIKQAI 242 (355) Q Consensus 166 GG~v~W~~g~~~~~sds~a~~~~~~--~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~-~~~~~~ai 242 (355) ||||.|.+|.++|+.+++++++++. |+++.++++||++.+|+||||+||++||+||.+|++|++++..+ +..|++|| T Consensus 159 Gg~vaWekG~~edd~ss~a~~v~~dS~~~~ma~~~lv~nd~KK~vSSr~GM~ltv~TS~~f~ew~e~v~~dr~~~m~~ai 238 (325) T TIGR01240 159 GGYVAWEKGKDEDDLSSAAVKVEDDSDEDKMAMVVLVVNDIKKDVSSREGMKLTVETSELFKEWVESVVIDRFEVMKKAI 238 (325) T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 88000027767678874036567778500110777763136887453035688898777642234310005899999997 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH--CCCEEEEEECCCCEEEEEECHHHHHHHHH Q ss_conf 8099999999999999989998703899568657889999999999742--89619999777981799955898999999 Q gi|254781016|r 243 IDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLFTHKIEETIKQ 320 (355) Q Consensus 243 ~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~--~g~~v~fT~DAGPNv~il~~~~~~~~i~~ 320 (355) +++||+.||+.+|.|++.|||+|+++.|||.||+++|+++|++|+++|+ +|++|||||||||||+|||.++|+-++.+ T Consensus 239 k~kdF~~~g~~t~~n~l~mHaTtl~a~PPf~Y~~~~S~~a~~av~~lrqfy~g~~~yfTmDAGPNvkvl~l~~~ls~l~e 318 (325) T TIGR01240 239 KTKDFEKLGKETEANSLSMHATTLDAQPPFSYLSDESKKAMEAVKELRQFYEGIICYFTMDAGPNVKVLVLEEDLSKLAE 318 (325) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCHHHHHH T ss_conf 32128999999987456520000147748000384468999999999887388136874158885388762323689999 Q ss_pred HHHHC Q ss_conf 97632 Q gi|254781016|r 321 FFPEI 325 (355) Q Consensus 321 ~l~~i 325 (355) +|..+ T Consensus 319 ~~~Kl 323 (325) T TIGR01240 319 TLTKL 323 (325) T ss_pred HHHHC T ss_conf 98430 No 2 >KOG2833 consensus Probab=100.00 E-value=0 Score=679.89 Aligned_cols=307 Identities=35% Similarity=0.580 Sum_probs=282.8 Q ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEE--CCCCEEEEEEECCC-CCCEEEECCEECCCCCHHHHHHH Q ss_conf 7877637897488424881167767011757898434681--27810799997178-88579987872566520689999 Q gi|254781016|r 18 PKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSL--GHLGTITHITVIDS-DADCIILNGQKISSQSSFFKKTT 94 (355) Q Consensus 18 ~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL--~~~~T~T~v~~~~~-~~d~~~lnG~~~~~~~~~~~ri~ 94 (355) ++.....||.+|.|||+||||||||+.+|||.|+|||+|| |.+.|.|++..+++ ++|++||||++.+..+++++++. T Consensus 2 ~k~~~~~t~taPvNIAvIKYWGKRD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~cl 81 (395) T KOG2833 2 DKPVAEVTATAPVNIAVIKYWGKRDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRCL 81 (395) T ss_pred CCCEEEEEECCCCEEEEEEECCCCCHHHCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHH T ss_conf 97403676316623666541244413213777770688853553144578884266445417887822136637899999 Q ss_pred HHHHHHHHHC-----------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHH Q ss_conf 9974216761-----------94399998502332110123224799999999998188999889998865213530343 Q gi|254781016|r 95 QFCDLFRQFS-----------KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRS 163 (355) Q Consensus 95 ~~l~~~r~~~-----------~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RS 163 (355) +-+++.+... .++++|.|.|||||||||||||+|||||++|++++|+++.+.++||++||+|||||||| T Consensus 82 ~e~r~~~~d~~~~~~~~~~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSGSACRS 161 (395) T KOG2833 82 REIRRLARDREESEASLPSNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSGSACRS 161 (395) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHH T ss_conf 99999865323311256767871178874378830320011024089999999998589999899999986148604554 Q ss_pred HCCCCHHCCCCCCCCCCCEEEEECC--CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHHHH Q ss_conf 1056200257898765441310156--668642158999728766752105679887618568999973-0550999999 Q gi|254781016|r 164 FYRGFCEWICGTDQNGMDSFAVPFN--NQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHIKQ 240 (355) Q Consensus 164 i~GG~v~W~~g~~~~~sds~a~~~~--~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~~~ 240 (355) +|||||.|+.|..+||+||.|++.. .|||+++++|+|+++.+|+++||+||+++|+||++|+.|+++ ++.++.+|.+ T Consensus 162 l~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri~~m~e 241 (395) T KOG2833 162 LYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRIQQMRE 241 (395) T ss_pred HCCCEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 30453677315645787503787035347873189999960553344661888988887699999998664799999999 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHH--HCCCEEEEEECCCCEEEEEECHHHHHHH Q ss_conf 99809999999999999998999870389956865788999999999974--2896199997779817999558989999 Q gi|254781016|r 241 AIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDAR--QQSIPIYFTLDAGPNLKLLFTHKIEETI 318 (355) Q Consensus 241 ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R--~~g~~v~fT~DAGPNv~il~~~~~~~~i 318 (355) ||+++||+.|++++|.|+|++||+||++.||++||++.+++||.+|++++ .+++.++||||||||.+++++++++.++ T Consensus 242 aI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e~~~~~ 321 (395) T KOG2833 242 AIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEENVSQL 321 (395) T ss_pred HHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEHHHHHHHH T ss_conf 99865778877777613124564423158974785364079999999987516971689883389862899836409999 Q ss_pred HHHHHH Q ss_conf 999763 Q gi|254781016|r 319 KQFFPE 324 (355) Q Consensus 319 ~~~l~~ 324 (355) .+.+-. T Consensus 322 l~~~~~ 327 (395) T KOG2833 322 LAAVLK 327 (395) T ss_pred HHHHHH T ss_conf 999998 No 3 >COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Probab=100.00 E-value=0 Score=647.01 Aligned_cols=300 Identities=41% Similarity=0.657 Sum_probs=279.3 Q ss_pred CEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEE-EECCC-CCCEEEECCEECCCCCHHHHHHHHHHHHH Q ss_conf 37897488424881167767011757898434681278107999-97178-88579987872566520689999997421 Q gi|254781016|r 23 KSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHI-TVIDS-DADCIILNGQKISSQSSFFKKTTQFCDLF 100 (355) Q Consensus 23 ~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v-~~~~~-~~d~~~lnG~~~~~~~~~~~ri~~~l~~~ 100 (355) ++|++||+||||||||||+|+.+|+|.|||||+||++++|+|++ ++.++ ++|+|||||++.+.. .+|+.+++|.+ T Consensus 5 ~~t~~ay~nialIKywGk~D~~l~iP~~~SiS~t~~df~t~t~~~~~~~~~~~D~~~lNG~~~~~~---~~k~~~~ld~~ 81 (329) T COG3407 5 IITASAYPNIALIKYWGKRDEALNIPLNSSISVTLEDFSTTTTAEELTENDEEDTFILNGELSEDE---NEKARRVLDRF 81 (329) T ss_pred CEEEEECCHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEECCCCCCHH---HHHHHHHHHHH T ss_conf 513673523378776142316424778880478841444336778753788762799988227157---89999999999 Q ss_pred HHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCC Q ss_conf 67619--4399998502332110123224799999999998188999889998865213530343105620025789876 Q gi|254781016|r 101 RQFSK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQN 178 (355) Q Consensus 101 r~~~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~ 178 (355) |+..+ ++++|+|+||||||+||||||||||||++|+.+++++++|..++|++||+||||||||+||||+.|..|. T Consensus 82 R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~W~~~~--- 158 (329) T COG3407 82 RKEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGSGSASRSIFGGFVLWEKGE--- 158 (329) T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCEEEECCCC--- T ss_conf 87635466079997457876345210188999999999765244788799999987752411454228866730688--- Q ss_pred CCCEEEEEC--CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 544131015--666864215899972876675210567988761856899997305509999999980999999999999 Q gi|254781016|r 179 GMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 179 ~sds~a~~~--~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) |.++++++. .+.|+++.+++++++.++|+++||+||+.++.|||||++|++.+..++++|+++++++||++|++++|+ T Consensus 159 g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~~~tS~~y~~w~~~~~~~~~~m~~~~~~~Df~~i~~~~e~ 238 (329) T COG3407 159 GEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLTAETSPFYDAWLEHSEEDLEEMKEAIREKDFEKIGELAEN 238 (329) T ss_pred CCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 87521012023467623142799974556778736877777770727899999888759999999861479999999986 Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCC Q ss_conf 999899987038995686578899999999997428961999977798179995589899999997632100 Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITII 328 (355) Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~ 328 (355) |+++|||++|++.|||+||+++|+++|++|+++|++|.+|||||||||||+|+|++++++.+.+++.....+ T Consensus 239 dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGPnV~v~~~~~~l~~~~~~~~~~~~~ 310 (329) T COG3407 239 DSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGPNVKVITLEENLIDLLEILKTLECI 310 (329) T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHCCCC T ss_conf 599999998456996399883189999999998733884699972799659997215489999987313565 No 4 >COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Probab=99.70 E-value=2.6e-14 Score=120.44 Aligned_cols=252 Identities=20% Similarity=0.156 Sum_probs=170.8 Q ss_pred HCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE---ECCCCCH--HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 1757898434681278107999971788857998787---2566520--6899999974216761943999985023321 Q gi|254781016|r 45 LNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ---KISSQSS--FFKKTTQFCDLFRQFSKVYFLIETSNNIPTK 119 (355) Q Consensus 45 l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~---~~~~~~~--~~~ri~~~l~~~r~~~~~~~~I~S~N~fPta 119 (355) +.=|=-+++.+-|+.+.+.+.++..+ ..++...|. .++.++. ..+-+.++++.+.... .++|+-+|++|.+ T Consensus 14 NlGpGFD~lGlAl~~~~~~~v~~~~~--~~~i~~~g~~~~~iP~~~~n~~~~~~~~~~~~~~~~~--~~~i~i~k~IP~~ 89 (299) T COG0083 14 NLGPGFDVLGLALDLYNDVVVVEVVD--KFEIEVEGEGADKIPLDPENLVYQAALKFLEALGIEA--GVKIRIEKGIPLG 89 (299) T ss_pred CCCCCCCCEEEECCCCCCEEEEEECC--CEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHCCCC--CEEEEEECCCCCC T ss_conf 46777000012014557279997047--3799983465667999830009999999999829986--5799997699877 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC---CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCC-CCE Q ss_conf 101232247999999999981889998899988652135---3034310562002578987654413101566686-421 Q gi|254781016|r 120 AGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSG---SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWP-DLR 195 (355) Q Consensus 120 aGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSG---SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~-dl~ 195 (355) .||+|||+..+|-..|++++++.+++.+++-.+|-.++| ..+.|++||++++.. .++..+..++ |+ ++. T Consensus 90 rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgHpDNVapa~lGG~~l~~~---~~~~~~~~v~----~~~~~~ 162 (299) T COG0083 90 RGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGHPDNVAPAVLGGLVLVEE---ESGIISVKVP----FPSDLK 162 (299) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEE---CCCCEEEECC----CCCCEE T ss_conf 787589999999999999984599989999999997558971077776078799861---5873479715----876468 Q ss_pred EEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 58999728766752105679887618568999973055099999999809999999999999998999870389956865 Q gi|254781016|r 196 IGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYW 275 (355) Q Consensus 196 ~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~ 275 (355) .++++.+.+ .||..+......+--++.- -..-.+..-++.|+.++| ..++..+|+| .+|.-.+..- T Consensus 163 ~v~~iP~~e----~sT~~aR~vLP~~~~~~da-V~n~s~~a~lv~al~~~~-~~l~~~~~~D--~ihepyR~~L------ 228 (299) T COG0083 163 LVVVIPNFE----VSTAEARKVLPKSYSRKDA-VFNLSRAALLVAALLEGD-PELLRAMMKD--VIHEPYRAKL------ 228 (299) T ss_pred EEEEECCCC----CCHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHCCC-HHHHHHHHCC--CCCHHHHHHH------ T ss_conf 999908965----6579999746566888999-999999999999997699-9999987036--0104666532------ Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHHHHHHH Q ss_conf 7889999999999742896199997779817999558989999999763 Q gi|254781016|r 276 QKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPE 324 (355) Q Consensus 276 ~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~ 324 (355) -|..-++.+ -..+.|--..+=-.|||.+..||.+.+.+.+.+.+.+ T Consensus 229 ~P~~~~v~~---~a~~~gA~g~~lSGAGPTi~al~~~~~~e~~~~~~~~ 274 (299) T COG0083 229 VPGYAEVRE---AALEAGALGATLSGAGPTVFALADESDAEKAAALLEE 274 (299) T ss_pred CCCHHHHHH---HHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHH T ss_conf 701899999---9864796599996478707998454206679999999 No 5 >PRK01212 homoserine kinase; Provisional Probab=99.65 E-value=5.2e-14 Score=118.31 Aligned_cols=249 Identities=19% Similarity=0.159 Sum_probs=157.3 Q ss_pred CCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE---ECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCH Q ss_conf 57898434681278107999971788857998787---2566520689999997421676194--399998502332110 Q gi|254781016|r 47 LPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ---KISSQSSFFKKTTQFCDLFRQFSKV--YFLIETSNNIPTKAG 121 (355) Q Consensus 47 lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~---~~~~~~~~~~ri~~~l~~~r~~~~~--~~~I~S~N~fPtaaG 121 (355) =|=-++|.+-|+ +|-+.+++..+ +.+.+.|. ..+..++ .-+.+....+.+..+. .++|+-++++|.++| T Consensus 16 G~GFD~lg~Al~-l~d~v~v~~~~---~~~~~~g~~~~~lP~d~~--Nlv~~a~~~~~~~~g~~~g~~I~i~k~IP~~~G 89 (293) T PRK01212 16 GPGFDSLGLALS-LYDEVTVEEAD---FSLEVEGEFADKLPLDEE--NLVYQAALKFLEKLGKPPGLRLELEKNIPLGRG 89 (293) T ss_pred CCCHHHHHCCCC-CCCEEEEEECC---CEEEEEECCCCCCCCCCC--CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC T ss_conf 737466654567-77599999868---789998168666999998--179999999999839998879999718986566 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC---CHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEE Q ss_conf 12322479999999999818899988999886521353---034310562002578987654413101566686421589 Q gi|254781016|r 122 LASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGS---ACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGL 198 (355) Q Consensus 122 LASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGS---A~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i 198 (355) |+||||..+|...+++++++++++.+++-.+|..+-|- .+.+++||++....+. +.....++.. +++..++ T Consensus 90 LGsssa~aaa~l~a~n~l~~~~ls~~eL~~lA~~~e~H~DNv~P~~~GG~~~~~~~~---~~~~~~~~~~---~~~~~vl 163 (293) T PRK01212 90 LGSSAASIVAALVAANELLGLPLSKEELLQLAGEGEGHPDNVAPALLGGLVLALEEN---GVISVKIPVF---DDWKWVV 163 (293) T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEECCEEEEECCC---CEEEEECCCC---CCEEEEE T ss_conf 575188999999999998179989899999999842676655774526778996279---6489974788---7648999 Q ss_pred EEECCCCCCCCCCHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH Q ss_conf 9972876675210567988761-856899997305509999999980999999999999999899987038995686578 Q gi|254781016|r 199 LKIIDREKKIGSREAMEITRHH-SPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQK 277 (355) Q Consensus 199 ~iv~~~~K~vsSt~gm~~~v~t-Sp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~ 277 (355) ++.+.+ .||.-+...... -++ ...+ ..-.+...+..++.++|++.+++..+ | .||+-.... +-| T Consensus 164 ~~P~~~----vsT~~aR~~Lp~~~~~-~dav-~~~~~~~~l~~al~~~d~~~l~~~~~-D--~lhep~r~~------liP 228 (293) T PRK01212 164 AIPGIE----LSTAEARAVLPKQYSR-KDAV-FNSSRLALLVAALYTGDYELAGAAMK-D--VLHEPYRAK------LIP 228 (293) T ss_pred EECCCC----CCHHHHHHHCCCCCCH-HHHH-HHHHHHHHHHHHHHCCCHHHHHHHHC-C--HHHHHHHHH------HCC T ss_conf 948967----4489999856032887-8988-65534378899998399999998740-0--223567876------385 Q ss_pred HHHHHHHHHHHHHHCC-CEEEEEECCCCEEEEEECHHH-HHHHHHHHHHCC Q ss_conf 8999999999974289-619999777981799955898-999999976321 Q gi|254781016|r 278 ETIQGMERVWDARQQS-IPIYFTLDAGPNLKLLFTHKI-EETIKQFFPEIT 326 (355) Q Consensus 278 ~t~~ii~~v~~~R~~g-~~v~fT~DAGPNv~il~~~~~-~~~i~~~l~~i~ 326 (355) +..++.+. +++.| ..++.+ .+||.|.-||..++ ++.|.+.+.+.. T Consensus 229 ~~~~i~~~---~~~~GA~~~~lS-GSGptv~al~~~~~~A~~i~~~l~~~~ 275 (293) T PRK01212 229 GFAEVRQA---ALEAGALGAGIS-GAGPTVFALCDKEDAAEAVADALEKAF 275 (293) T ss_pred CHHHHHHH---HHHCCCCEEEEE-CHHHHEEEEECCHHHHHHHHHHHHHHH T ss_conf 69999999---997899789998-741112489778899999999999976 No 6 >PRK01123 shikimate kinase; Provisional Probab=99.57 E-value=2.3e-12 Score=106.87 Aligned_cols=228 Identities=18% Similarity=0.240 Sum_probs=131.5 Q ss_pred CCCEEEEEEECCCCCC-EEEECCEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 7810799997178885-79987872566520689999997421676194--39999850233211012322479999999 Q gi|254781016|r 59 HLGTITHITVIDSDAD-CIILNGQKISSQSSFFKKTTQFCDLFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLA 135 (355) Q Consensus 59 ~~~T~T~v~~~~~~~d-~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~A 135 (355) ++.|+.+|+..+.+.. .....+.+... .. -+.+..+.+.+..+. .++|+.+.++|.++||+|||+..+|+..| T Consensus 28 dL~~~a~v~~~~~~~~~~~~~~~~~~~~-~~---l~~~~~~~~~~~~~i~~g~~i~i~s~IP~~~GL~SSSA~a~A~i~a 103 (283) T PRK01123 28 DLKTTATVELSDSGSKIKGEVSGYPDAD-TR---LVERCVELVLERFGIDYGGTVRTESEIPVASGLKSSSAAANALVLA 103 (283) T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCC-HH---HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 6459999998777764442005788756-38---9999999999862998775999955898667853789999999999 Q ss_pred HHHHHCCCCCHHHHHHHHHHC--------CC---CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCC Q ss_conf 999818899988999886521--------35---3034310562002578987654413101566686421589997287 Q gi|254781016|r 136 LFRIYSIPEKSESLSRVARLG--------SG---SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDR 204 (355) Q Consensus 136 l~~~~~~~~~~~~lS~lARlG--------SG---SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~ 204 (355) ++++++.+++..++-++|-.. +| -+|-|++||+++-... .. .+....+. +..++|++. . T Consensus 104 ~~~~~~~~Ls~~ei~~la~ea~~~~g~siTGa~DDa~As~~GG~~ltdn~-----~~--~ii~~~~~-~~~~vV~ip--~ 173 (283) T PRK01123 104 TLDALGEKLDDLDILRLGVKASKEAGVTVTGAFDDACASYFGGVCVTDNR-----EM--KILKRDEV-EGPVVVLIP--P 173 (283) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECC-----CC--EEEECCCC-CCCEEEEEC--C T ss_conf 99985899899999999999862078152367511667744977998188-----74--36651489-985899989--9 Q ss_pred CCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH Q ss_conf 66752105679887618568999973055099999999809999999999999998999870389956865788999999 Q gi|254781016|r 205 EKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGME 284 (355) Q Consensus 205 ~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~ 284 (355) .+...++.--.+. +.....++.+.+.+.++|+.. ++.++.+...+- +-| | . + T Consensus 174 ~~~~t~~~~~~~~-----------~~i~~~~~~a~~~~~~g~~~~--------Am~~Ngl~~~~~--l~~--~--~---~ 225 (283) T PRK01123 174 EKAFSANVDVERM-----------KLIAPYVEMAFELALAGDYFK--------AMTLNGLLYSSA--LGF--P--T---E 225 (283) T ss_pred CCCCCCCCCHHHH-----------HHHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHH--CCC--C--H---H T ss_conf 7773762767888-----------774389999999987798989--------987502642454--179--8--7---9 Q ss_pred HHHHHHHCC-CEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCC Q ss_conf 999974289-619999777981799955898999999976321003 Q gi|254781016|r 285 RVWDARQQS-IPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITIID 329 (355) Q Consensus 285 ~v~~~R~~g-~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~~ 329 (355) .+.+..+.| ..+..| .+||.|+.||.+++.+.|++.+.+.+.+. T Consensus 226 ~~~~al~~GAlga~iS-GsGPsi~al~~~e~~~~v~ea~~~~G~vi 270 (283) T PRK01123 226 PILDALEAGAVGAGLS-GTGPSYVALFDEENPEEVKEAWSKYGKVI 270 (283) T ss_pred HHHHHHHCCCEEEEEE-CCCCEEEEEECCCCHHHHHHHHHHCCCEE T ss_conf 9999997598499982-68987999980776799999998679889 No 7 >PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Probab=99.40 E-value=1.7e-09 Score=86.84 Aligned_cols=260 Identities=16% Similarity=0.180 Sum_probs=155.8 Q ss_pred CCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCC- Q ss_conf 4884248811677670117578984346812781079999717888579987872566520689999997421676194- Q gi|254781016|r 28 LPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKV- 106 (355) Q Consensus 28 ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~- 106 (355) |-.|+-| +=-|||+.- .-.-.|+=.++| ++-+-+++..+..+..+..+|...+..+. .-|.+.++.+++..+. T Consensus 7 AKINL~L-~V~~kr~dG--yH~l~sl~~~i~-l~D~i~i~~~~~~~i~~~~~~~~~p~~~~--Nlv~ka~~~l~~~~~~~ 80 (281) T PRK00128 7 AKINLSL-DVLGKREDG--YHEVEMIMTTID-LADRLEIEKLKEDKIVVESNSGYVPNDER--NLAYKAAKLLKERYNIK 80 (281) T ss_pred CCEECCE-ECCCCCCCC--CCEEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHHHCCC T ss_conf 5583443-028838999--883568999916-87299999978998899978887888985--69999999999974999 Q ss_pred -EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEEE Q ss_conf -3999985023321101232247999999999981889998899988652135303431056200257898765441310 Q gi|254781016|r 107 -YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAV 185 (355) Q Consensus 107 -~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a~ 185 (355) .+.|.-+-|+|.+|||++++|-.||+..+++++++++++.+++..+|+.....-.-.++||.+.. .|.++. - . T Consensus 81 ~~~~I~l~K~IP~gaGLGGGSSdAAa~L~~ln~l~~~~ls~~eL~~la~~iGaDVpffl~g~~a~~-~G~Ge~---i--~ 154 (281) T PRK00128 81 KGVRITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLKIGSDVPFCIYGGTALA-TGRGEK---I--T 154 (281) T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCCCEEE-ECCCCE---E--E T ss_conf 874899985798667778512889999999999847999999999999872788441104775698-558967---6--7 Q ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH Q ss_conf 15666864215899972876675210567988761856899997305509999999980999999999999999899987 Q gi|254781016|r 186 PFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATM 265 (355) Q Consensus 186 ~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~ 265 (355) ++. ..+++.+ ++|..+. .+ ||.-+-+...-+. ....+...+..++.++|+..+.+...+ .+-..- T Consensus 155 ~l~-~~~~~~~--vLv~P~~-~v-sT~~vy~~~~~~~-------~~~~~~~~~~~~l~~~d~~~~~~~l~N---dle~~a 219 (281) T PRK00128 155 PLK-PPPSCWV--VLAKPDI-GV-STKDVYKNLDLDK-------IYHPDTEKLIEAIENGDYQGICASMGN---VLEPVT 219 (281) T ss_pred ECC-CCCCCEE--EEECCCC-CC-CHHHHHHHCCCCC-------CCCCCHHHHHHHHHCCCHHHHHHHHHH---HHHHHH T ss_conf 888-7888589--9988999-97-8699998528002-------678776889998862899999886340---379999 Q ss_pred HCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEEEEEECH-HHHHHHHHHHHHC Q ss_conf 03899568657889999999999742896-199997779817999558-9899999997632 Q gi|254781016|r 266 IAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNLKLLFTH-KIEETIKQFFPEI 325 (355) Q Consensus 266 ~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv~il~~~-~~~~~i~~~l~~i 325 (355) ..- .|+-.++.+.. ++.|- .+..| ..||.|+-+|.. ++++++.+.|+.. T Consensus 220 ~~~-------~P~i~~i~~~l---~~~Ga~~~~mS-GSGst~Falf~~~~~A~~~~~~Lk~~ 270 (281) T PRK00128 220 LKK-------HPEIAKIKERM---LKFGADGALMS-GSGPTVFGLFDDESRAQRIYNGLKGF 270 (281) T ss_pred HHH-------CHHHHHHHHHH---HHCCCCEEEEE-CCCCEEEEEECCHHHHHHHHHHHHHH T ss_conf 985-------95999999999---85799858987-72121899989999999999986714 No 8 >PTZ00299 homoserine kinase; Provisional Probab=99.40 E-value=7.2e-11 Score=96.37 Aligned_cols=292 Identities=15% Similarity=0.163 Sum_probs=169.8 Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEE---CCCCC-H-HHHHHH Q ss_conf 776378974884248811677670117578984346812781079999717888579987872---56652-0-689999 Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQK---ISSQS-S-FFKKTT 94 (355) Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~---~~~~~-~-~~~ri~ 94 (355) ...+.+.++|.-+| +.=|=-++|.+-|+ .|.+.+++. .+...+.+.|+. .+..+ . ..+-+. T Consensus 4 ~~~kV~V~VPATsA-----------NLGpGFD~LGlAL~-ly~ev~v~~--~~~~~i~i~g~g~~~ip~d~~Nlv~~a~~ 69 (336) T PTZ00299 4 LPKKVVLRVPATTA-----------NIGPAYDTLGMALS-IFMELTVEH--ADAFSMTVEGEGSEHISTDEDNMVVQACR 69 (336) T ss_pred CCCEEEEEECCCHH-----------HCCCCHHHHHHHCC-CCCEEEEEE--CCCCEEEEEECCCCCCCCCCCCHHHHHHH T ss_conf 89759999674446-----------44523675253036-774899998--89717999706777799996114999999 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHCCC---CCHHHHCCCC Q ss_conf 99742167619439999850233211012322479999999999818899---98899988652135---3034310562 Q gi|254781016|r 95 QFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPE---KSESLSRVARLGSG---SACRSFYRGF 168 (355) Q Consensus 95 ~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~---~~~~lS~lARlGSG---SA~RSi~GG~ 168 (355) ..++.+-......++|+-+|++|.+.||+|||++..|-..+.+.+.++.+ +.+++-.+|-.++| ..+.++|||| T Consensus 70 ~~~~~~~~~~~~~~~i~i~~~IP~~rGLGSSAaAiVaG~~aan~L~g~~l~~~~~~~ll~~a~~~EgHPDNVAPAllGG~ 149 (336) T PTZ00299 70 LAFEEYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEGHPDNAAPAIYGGI 149 (336) T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE T ss_conf 99998569788963899836888766751388999999999998626887755899999987621689745543245886 Q ss_pred HH-CCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 00-25789876544131015666864215899972876675210567988761856899997305509999999980999 Q gi|254781016|r 169 CE-WICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDF 247 (355) Q Consensus 169 v~-W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df 247 (355) ++ |... ......+.++.+ +++..++++.+.+-+ .||+.+.......--++.=+ ..-.++.-+..++..+|+ T Consensus 150 ~l~~~~~--~~~~~~~~ip~p---~~l~~Vv~iP~~~~~--lsT~~AR~vLP~~v~~~daV-~n~~r~a~lv~al~~~d~ 221 (336) T PTZ00299 150 QLVYKKD--NGRFLTYRVPTP---PNLSVVLFVPHNKMK--ANTHVTRNLIPTSVSLEDAV-FNISRTSILVLALSTGDL 221 (336) T ss_pred EEEEECC--CCCEEEEECCCC---CCCEEEEEECCCCCE--ECHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHCCCH T ss_conf 9999728--982799977999---884899997897633--06899996586768899999-999999999999954989 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCCEEEEEEC------------HHH Q ss_conf 9999999999998999870389956865788999999999974289-619999777981799955------------898 Q gi|254781016|r 248 IKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGPNLKLLFT------------HKI 314 (355) Q Consensus 248 ~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGPNv~il~~------------~~~ 314 (355) +.+. .+ .| ++|+-.+.. -+-|...++.+.. .+.| +.++.+ .|||.|.-||. ++. T Consensus 222 ~ll~-~~-~D--~ihepyR~~-----~LiP~~~~v~~~a---~~aGA~g~~iS-GAGPTi~Al~~g~~~~~~~~~~~~~~ 288 (336) T PTZ00299 222 RMLK-SC-SD--KLHEQQRSD-----ALFPHFRPCVKAA---REAGAHYAFLS-GAGPSVCALVGGRHGDPLTQPREERK 288 (336) T ss_pred HHHH-HC-CC--EEECCCHHH-----HCCCCHHHHHHHH---HHCCCEEEEEE-CHHHHHHEEECCCCCCCCCCCCHHHH T ss_conf 8997-48-73--486520233-----2262799999999---87899499997-64222442621556653224410345 Q ss_pred HHHHH----HHHHHCCC-----CCCCCCCCCCCCCCCCCCC Q ss_conf 99999----99763210-----0368887512000002432 Q gi|254781016|r 315 EETIK----QFFPEITI-----IDPLDSPDLWSTKDSLSQK 346 (355) Q Consensus 315 ~~~i~----~~l~~i~~-----~~~~~~~~~~~~~~~~~~~ 346 (355) .++|. +.|.+.++ +......+..+++..-.-+ T Consensus 289 a~~V~~aM~~a~~~~gi~~~~~i~~~~~~G~~vi~~~~~~~ 329 (336) T PTZ00299 289 AESVAEAMIKAAEAVGVAGRVIITQPSDQGVHLVGTTCIRP 329 (336) T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCC T ss_conf 99999999999998698458999346778878965645678 No 9 >PTZ00298 mevalonate kinase; Provisional Probab=99.40 E-value=1e-09 Score=88.29 Aligned_cols=212 Identities=15% Similarity=0.191 Sum_probs=130.2 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------C--CC-CCHHHHCCCCHHCCCCCCC Q ss_conf 3999985023321101232247999999999981889998899988652------1--35-3034310562002578987 Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL------G--SG-SACRSFYRGFCEWICGTDQ 177 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------G--SG-SA~RSi~GG~v~W~~g~~~ 177 (355) .++|...-+.|.++||+||||...|++.|+.++++++++.+++..+|.. | || -..-|.|||++...++... T Consensus 94 g~~i~i~S~iP~gaGLGSSAAv~VA~~~Al~~~~~~~ls~~~i~~~A~~~E~~~hG~pSGiD~~~s~~Gg~i~f~~~~~~ 173 (328) T PTZ00298 94 GLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYGGLISYRRVNGK 173 (328) T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEECCCC T ss_conf 53899705888656735068899999999999847999999999999999998558997276999945987999854886 Q ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH----HC-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 654413101566686421589997287667521056798876----18-5689999730550999999998099999999 Q gi|254781016|r 178 NGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRH----HS-PFFTQWTQQISTDLAHIKQAIIDQDFIKLGE 252 (355) Q Consensus 178 ~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~----tS-p~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~ 252 (355) .... .+.+. ....+++++++.+ .+|..+-..|. .. ..|+.=++...+-..+..++++++|+..||+ T Consensus 174 ~~~~--~i~~~-----~~~~lvi~dtg~~--~~T~~~V~~V~~~~~~~p~~~~~i~~~~~~iv~~a~~aL~~~d~~~lG~ 244 (328) T PTZ00298 174 SVFK--RIAFQ-----QPLYLVVCSTGIT--ASTTKVVGDVRKLKENQPTWFNRLLENYNACVSEAKEALQKGNLFRVGE 244 (328) T ss_pred CCCE--ECCCC-----CCCEEEEEECCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 4420--23678-----9706999836986--5369999999999865869999999999999999999986489999999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCC--EEEEEECH-HHHHHHHHHHHHCCCC Q ss_conf 99999998999870389956865788999999999974289-61999977798--17999558-9899999997632100 Q gi|254781016|r 253 VAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGP--NLKLLFTH-KIEETIKQFFPEITII 328 (355) Q Consensus 253 i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGP--Nv~il~~~-~~~~~i~~~l~~i~~~ 328 (355) ++-.+ |.++.+= .+. +|.--++ |+..|+.| +.+=.| .||= -+..||+. ++++.|.+.+.+-.. T Consensus 245 Lm~~n----h~lL~~l--gVS--~p~Ld~l---v~~a~~~GAlGAKLT-GAG~GGcvIaL~~~~~~a~~i~~al~~~~~- 311 (328) T PTZ00298 245 LMNAN----HDLCQKL--TVS--CRELDSI---VQTCRTYGALGAKMS-GTGRGGLVVALAASEDQRDAIAKAVRARCP- 311 (328) T ss_pred HHHHH----HHHHHHC--CCC--CHHHHHH---HHHHHHCCCCEEEEC-CCCCCCEEEEECCCHHHHHHHHHHHHHHCC- T ss_conf 99999----9989746--889--7899999---999997699655751-468875899983866669999999997466- Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 368887512000002 Q gi|254781016|r 329 DPLDSPDLWSTKDSL 343 (355) Q Consensus 329 ~~~~~~~~~~~~~~~ 343 (355) . ....|.-.++- T Consensus 312 --~-a~~~w~~~~~~ 323 (328) T PTZ00298 312 --E-AKFVWRYTVQP 323 (328) T ss_pred --C-CCCEEEEEECC T ss_conf --7-73059999556 No 10 >PRK04344 consensus Probab=99.35 E-value=4.3e-09 Score=83.96 Aligned_cols=267 Identities=16% Similarity=0.138 Sum_probs=159.6 Q ss_pred CEEEECCCCEEEE-ECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHH Q ss_conf 3789748842488-116776701175789843468127810799997178885799878725665206899999974216 Q gi|254781016|r 23 KSSAFLPSNIALC-KYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFR 101 (355) Q Consensus 23 ~~ta~ap~NIALI-KYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r 101 (355) +.+.+||.-|=|- +=.|||+.- .-.-.|+=.++| ++-+-+++..+..+.++..++...+..++ .-|.+.++.++ T Consensus 2 ~i~~kapAKINL~L~V~~kr~dG--yH~l~s~~~~i~-l~D~i~i~~~~~~~i~i~~~~~~~p~~~~--Nlv~ka~~~l~ 76 (284) T PRK04344 2 KIYEKAPAKINLSLDTLFKRDDG--YHEVEMIMTTID-LADRLTLEELKEDKIVVDSENRFVPSDQR--NLAYQAAKLLK 76 (284) T ss_pred CEEEEECEEEECCCCCCCCCCCC--CCEEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--HHHHHHHHHHH T ss_conf 05167121285333227758999--822689999956-88299999988998899978876888762--19999999999 Q ss_pred HHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCC Q ss_conf 76194--3999985023321101232247999999999981889998899988652135303431056200257898765 Q gi|254781016|r 102 QFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNG 179 (355) Q Consensus 102 ~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~ 179 (355) +..+. .+.|.-+-|+|.+|||++++|-.||+..+++++++++++.+++..+|+.....-.-+++||.+. ..|.++. T Consensus 77 ~~~~~~~~~~I~l~KnIPvgaGLGGGSSdAAa~L~~Ln~l~~l~ls~~~L~~la~~lGaDVPffl~g~~a~-~~G~Ge~- 154 (284) T PRK04344 77 ERYNIKKGVTISIDKHIPVAAGLAGGSSDAAATLRGLNRLWNLGLSLEELAELGSEIGSDVPFCVYGGTAL-ATGRGEK- 154 (284) T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCEE-EECCCCE- T ss_conf 97598997699999789886788986157999999999985689999999999986279864898276189-9858965- Q ss_pred CCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 44131015666864215899972876675210567988761856899997305509999999980999999999999999 Q gi|254781016|r 180 MDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNAL 259 (355) Q Consensus 180 sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal 259 (355) . .++.. .+++.+ +++.... ..||.-+=.....+ .....++..+..++..+|+..+.....+ T Consensus 155 --l--~~l~~-~~~~~~--vlv~P~~--~vST~~vy~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~N--- 215 (284) T PRK04344 155 --I--EPLPT-PPSCWV--VLAKPNI--GVSTPDIFKNLNLD-------RIEHPDTDKMVEAIENGDYQQICQSLGN--- 215 (284) T ss_pred --E--EECCC-CCCCEE--EEECCCC--CCCHHHHHHHCCCC-------CCCCCCHHHHHHHHHCCCHHHHHHHCCC--- T ss_conf --0--79987-787589--9988999--96739999745800-------0468777899998862799999977348--- Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHH-HHHHHHHHHHHC Q ss_conf 899987038995686578899999999997428961999977798179995589-899999997632 Q gi|254781016|r 260 KMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHK-IEETIKQFFPEI 325 (355) Q Consensus 260 ~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~-~~~~i~~~l~~i 325 (355) .|-.....- .|+-.++.+. +++.|-..+.=-..||.|+-||..+ .++++.+.|+.. T Consensus 216 dle~~~~~~-------~P~i~~i~~~---l~~~Ga~~~~mSGSGstvF~lf~~~~~A~~~~~~lk~~ 272 (284) T PRK04344 216 VLEPVTLAK-------HPEIAKIKNR---MLKFGADAALMSGSGPTVFGLCRKESRAQRIYNGLKGF 272 (284) T ss_pred CHHHHHHHH-------CHHHHHHHHH---HHHCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHH T ss_conf 568999985-------9399999999---99679986899772512489989999999999987875 No 11 >PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Probab=99.35 E-value=1.1e-09 Score=88.16 Aligned_cols=270 Identities=13% Similarity=0.077 Sum_probs=165.3 Q ss_pred EEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEE---CCCCCHHHHHHHHHHHHHH Q ss_conf 8974884248811677670117578984346812781079999717888579987872---5665206899999974216 Q gi|254781016|r 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQK---ISSQSSFFKKTTQFCDLFR 101 (355) Q Consensus 25 ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~---~~~~~~~~~ri~~~l~~~r 101 (355) .|-|-.|+.|= --|||+.- .-.-.|+=.++| ++-+ +++.+.+.+++.++|.. .+..+. .-|.+.++.++ T Consensus 4 ~apAKINL~L~-V~~kr~dG--yH~l~s~~~~i~-l~D~--i~i~~~~~~~~~~~~~~~~~~P~d~~--Nlv~kA~~~~~ 75 (299) T PRK03188 4 RAPGKVNLHLG-VGPLREDG--YHELATVFQAVS-LYDE--VTVTPADDLSLTVSGEGADQVPTDES--NLAWRAAELLA 75 (299) T ss_pred EEEEEEECCCC-CCCCCCCC--CCCEEEEEEEEC-CCEE--EEEEECCCCEEEEECCCCCCCCCCCC--CHHHHHHHHHH T ss_conf 75012820403-38879999--851358999936-8719--99999999829995787344889986--49999999999 Q ss_pred HHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCC Q ss_conf 76194--3999985023321101232247999999999981889998899988652135303431056200257898765 Q gi|254781016|r 102 QFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNG 179 (355) Q Consensus 102 ~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~ 179 (355) +..+. .+.|.-+.++|.++||++++|..||...+++++++++++.++|..+|+....--.-+++||.+.. .|.++. T Consensus 76 ~~~~~~~~~~I~l~K~IP~gaGLGGGSsdAAa~L~~ln~l~~l~ls~~eL~~lA~~lGsDVPffL~gg~a~~-~G~Ge~- 153 (299) T PRK03188 76 EHVGRAPDVHIHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLALAAELGSDVPFALLGGTALG-TGRGEE- 153 (299) T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCEEE-EECCCE- T ss_conf 972999976999995797767777407899999999999717997989999999861788763762786899-974867- Q ss_pred CCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 44131015666864215899972876675210567988761856899997305509999999980999999999999999 Q gi|254781016|r 180 MDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNAL 259 (355) Q Consensus 180 sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal 259 (355) ...+ . ..+.+.++ ++.... .+ ||...-...... ....-......+...+.+++..+|++.+.+...+| T Consensus 154 --l~pl--~-~~~~~~~v--lv~P~~-~v-ST~~ay~~ld~~-~~~~~~~~~~~~~~~l~~al~~gd~~~l~~~l~Nd-- 221 (299) T PRK03188 154 --LAPV--L-ARGTFHWV--LAFADG-GL-STPAVFRELDRL-REAGPDPPRLGDPEPLLAALAAGDPAQLAPLLGND-- 221 (299) T ss_pred --EEEC--C-CCCCCEEE--EECCCC-CC-CHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCC-- T ss_conf --6888--7-67863799--986899-94-729999977764-23667765667879999999839999998871686-- Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECH-HHHHHHHHHHHHCCC Q ss_conf 89998703899568657889999999999742896199997779817999558-989999999763210 Q gi|254781016|r 260 KMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTH-KIEETIKQFFPEITI 327 (355) Q Consensus 260 ~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~-~~~~~i~~~l~~i~~ 327 (355) |...- +-+-|+--++.+ .+++.|-....=-.+||.|+-||.. ++++.+.+.+..-++ T Consensus 222 -Le~~a-------~~l~P~i~~i~~---~l~~~Ga~~a~mSGSGsTvFalf~~~~~A~~~a~~l~~~g~ 279 (299) T PRK03188 222 -LQAAA-------LSLRPELRRTLR---AGEEAGALAGIVSGSGPTCAFLCASADSAVDVAAALSGAGV 279 (299) T ss_pred -HHHHH-------HHCCCHHHHHHH---HHHHCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHCCC T ss_conf -06778-------771909999999---99967998789978440102797899999999999975793 No 12 >PRK03926 mevalonate kinase; Provisional Probab=99.32 E-value=9.7e-09 Score=81.48 Aligned_cols=261 Identities=18% Similarity=0.187 Sum_probs=151.1 Q ss_pred EEEECCCCEEEE----ECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHH Q ss_conf 789748842488----1167767011757898434681278107999971788857998787256652068999999742 Q gi|254781016|r 24 SSAFLPSNIALC----KYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDL 99 (355) Q Consensus 24 ~ta~ap~NIALI----KYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~ 99 (355) ..+.||--|=|| =|+|+ +-|.+.++ .+|+.+++.. .|.+++...... ......-+...++. T Consensus 3 i~asAPGrv~LiGEH~v~~G~----------~aia~AI~-~~~~v~~~~~---~d~i~~~~~~~~-~~~~~~~~~~~l~~ 67 (302) T PRK03926 3 VLCSAPGKIYLFGEHAVVYGK----------PAIACAID-LRTRVRAELN---DDSIYIQSDYGK-TGEVHPYVRAAIEK 67 (302) T ss_pred EEEEECEEEEEEECCEEECCC----------EEEEEEEC-CCEEEEEEEC---CCEEEEECCCCC-CCCHHHHHHHHHHH T ss_conf 999807899999387698696----------08999937-8199999998---990699754776-54200799999999 Q ss_pred HHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------C--CC-CCHHHHCCCCH Q ss_conf 1676194-3999985023321101232247999999999981889998899988652------1--35-30343105620 Q gi|254781016|r 100 FRQFSKV-YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL------G--SG-SACRSFYRGFC 169 (355) Q Consensus 100 ~r~~~~~-~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------G--SG-SA~RSi~GG~v 169 (355) +++.... .+.|....++|.++||+||||--.|++.|+.++++++++.+++..+|.. | || -..-|.|||+. T Consensus 68 ~~~~~~~~G~~i~I~S~iP~gaGLgSSAAl~va~~~al~~~~g~~ls~~~la~la~~~E~~~~G~~sGiD~~~s~~Gg~~ 147 (302) T PRK03926 68 VREEADKDGVDLSITSQIPVGSGLGSSAAVTVATIGALNKLLGLGLSLEEIAKMGHEVELLVQGAASPTDTYVSTIGGFV 147 (302) T ss_pred HHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEE T ss_conf 99756899837999656887778763899999999999985489989999999999999874689978899999759989 Q ss_pred HCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH----HCH-HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02578987654413101566686421589997287667521056798876----185-6899997305509999999980 Q gi|254781016|r 170 EWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRH----HSP-FFTQWTQQISTDLAHIKQAIID 244 (355) Q Consensus 170 ~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~----tSp-~y~~r~~~~~~~~~~~~~ai~~ 244 (355) ....+. .++ .+++. +++.+.+.+ .+|......+. ..| .++.-++...+...++.+++.+ T Consensus 148 ~~~~~~--------~l~----~~~~~--l~l~~tg~~--~~t~~~v~~v~~~~~~~~~~~~~~~~~~~~i~~~a~~~l~~ 211 (302) T PRK03926 148 TIPDRK--------KLP----FMDCG--IVVGYTGSS--GSTKELVANVRKLYEEYPELIEPILESIGKLSEKAEELVLS 211 (302) T ss_pred EECCCC--------CCC----CCCCC--EEEEECCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 966789--------777----78978--899983974--65999999999998766999999999999999999987765 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCC--CEEEEEECHHHHHHHHHH Q ss_conf 9999999999999998999870389956865788999999999974289-6199997779--817999558989999999 Q gi|254781016|r 245 QDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAG--PNLKLLFTHKIEETIKQF 321 (355) Q Consensus 245 ~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAG--PNv~il~~~~~~~~i~~~ 321 (355) +|+..||+++..+ |.++ ... .+. +|+--++ |...|+.| +.+=-| .|| =-+..|++++..+.|.+. T Consensus 212 ~d~~~lG~Lm~~~----h~ll-~~l-gVS--~peld~l---v~~a~~~GalGAKlt-GaG~GGc~iaL~~~d~~~~v~~a 279 (302) T PRK03926 212 GDYVSIGELMNIN----QGLL-DAL-GVS--TKELSEL---VYAARTAGAFGAKIT-GAGGGGCMVALTAPDKCREVATA 279 (302) T ss_pred CCHHHHHHHHHHH----HHHH-HHC-CCC--CHHHHHH---HHHHHHCCCCEEEEC-CCCCCCEEEEEECCCCHHHHHHH T ss_conf 6499999999996----8878-731-689--8899999---999996798288805-89876289999461319999999 Q ss_pred HHHCCC Q ss_conf 763210 Q gi|254781016|r 322 FPEITI 327 (355) Q Consensus 322 l~~i~~ 327 (355) +.+.+. T Consensus 280 l~~ag~ 285 (302) T PRK03926 280 IGIAGG 285 (302) T ss_pred HHHCCC T ss_conf 997699 No 13 >COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Probab=99.29 E-value=8.2e-09 Score=82.00 Aligned_cols=253 Identities=21% Similarity=0.150 Sum_probs=144.2 Q ss_pred CCEEEEECCCCEEEEEEECCCCCCEEEECCEECC---CCCHHHHHHHHHHHHHHHHCC----CEEEEEEECCCCCCCHHH Q ss_conf 8434681278107999971788857998787256---652068999999742167619----439999850233211012 Q gi|254781016|r 51 NSLSLSLGHLGTITHITVIDSDADCIILNGQKIS---SQSSFFKKTTQFCDLFRQFSK----VYFLIETSNNIPTKAGLA 123 (355) Q Consensus 51 ~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~---~~~~~~~ri~~~l~~~r~~~~----~~~~I~S~N~fPtaaGLA 123 (355) |.|+.+++.. .++++...+..+..+...+-... ..+. ..-+...++.+.+... .++.++-.-..|-.+||+ T Consensus 22 pAI~~aI~~~-~~v~~~~s~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLG 99 (307) T COG1577 22 PAIAAAIDLR-VTVTISESDSNKIVIESSDLKSSTLERDED-EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLG 99 (307) T ss_pred CHHHEEEEEE-EEEEEEECCCCCEEEECCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC T ss_conf 3151350100-899999668885798416777655456663-24899999999987332578984799962799887862 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------CCCC---CHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCC Q ss_conf 32247999999999981889998899988652------1353---03431056200257898765441310156668642 Q gi|254781016|r 124 SSASGFAALTLALFRIYSIPEKSESLSRVARL------GSGS---ACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDL 194 (355) Q Consensus 124 SSASgfAALa~Al~~~~~~~~~~~~lS~lARl------GSGS---A~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl 194 (355) ||||...|++.|+.++|+.+++.+++..+|.. |.+| ..-+.|||++...++.+. ..+.-.+.. T Consensus 100 SSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~~~~gg~v~~~~~~~~-------~~l~~~~~~- 171 (307) T COG1577 100 SSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGFDF-------EKLEIELLG- 171 (307) T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCC-------CCCCCCCCC- T ss_conf 799999999999998628988989999999999998758987614038861888998458875-------201356677- Q ss_pred EEEEEEECCCCCCCCCCHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 1589997287667521056798876-----18568999973055099999999809999999999999998999870389 Q gi|254781016|r 195 RIGLLKIIDREKKIGSREAMEITRH-----HSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAAS 269 (355) Q Consensus 195 ~~~i~iv~~~~K~vsSt~gm~~~v~-----tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~ 269 (355) .++|.+++.. .||.-|-.-|. ...++..-++....-..++..++.++|++.|++++..+--.+-++- T Consensus 172 --~~~I~~tg~~--~sT~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~Lg---- 243 (307) T COG1577 172 --TLVIGDTGVP--GSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALG---- 243 (307) T ss_pred --EEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC---- T ss_conf --1899974886--60899999999999864677899999999999999999861649999999999998898658---- Q ss_pred CCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE--C-HHHHHHHHHHHHHCCCC Q ss_conf 95686578899999999997428961999977798179995--5-89899999997632100 Q gi|254781016|r 270 PPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLF--T-HKIEETIKQFFPEITII 328 (355) Q Consensus 270 P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~--~-~~~~~~i~~~l~~i~~~ 328 (355) +-+|+- -+.|+..|+.|..-+=...||=-=++++ . ++..+.+.+.+.+.++. T Consensus 244 ----Vs~~~L---~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~~~~l~~~~~~~~i~ 298 (307) T COG1577 244 ----VSTPEL---DELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEKAGIA 298 (307) T ss_pred ----CCCHHH---HHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC T ss_conf ----486899---9999999866951002146888866999835515899999888865863 No 14 >TIGR00191 thrB homoserine kinase; InterPro: IPR000870 Saccharomyces cerevisiae strains containing the erg8-1 mutation are temperature sensitive for growth due to a defect in phosphomevalonate kinase, an enzyme of isoprene and ergosterol biosynthesis. Subcloning and DNA sequencing have defined the functional ERG8 regulon as an 850bp upstream region and an adjacent 1,272bp open reading frame. The deduced ERG8 protein contains 424 residues and shows no similarity to known proteins, except within a putative ATP-binding domain present in many kinases . Enzymes that share the N-terminal Gly/Ser-rich putative ATP-binding region include galactokinase, homoserine kinase, mevalonate kinase and phosphomevalonate kinase. Homoserine kinase is a homodimeric enzyme involved in threonine biosynthesis. Sequence comparison of the yeast enzyme with the corresponding proteins from bacterial sources reveals the presence of several highly conserved regions, the pattern of occurrence of which suggests that the ancestral sequences might have been composed from separate (functional) domains. A block of similar residues, found towards the C-terminus, is also present in many other proteins involved in threonine (or serine) metabolism; this motif may therefore represent the binding site for the hydroxy-amino acids. Limited similarity was detected between a motif conserved among the homoserine kinases and consensus sequences found in other mono- or dinucleotide-binding proteins .; GO: 0004413 homoserine kinase activity, 0005524 ATP binding, 0006566 threonine metabolic process. Probab=99.23 E-value=8.5e-10 Score=88.88 Aligned_cols=263 Identities=21% Similarity=0.217 Sum_probs=162.8 Q ss_pred CCCCCEEEEECCCCEEEEEEEC-CCC-------CCEEEECCEE---CCCCCH---HHHHHHHHHHHHHHHC-CCEEEEEE Q ss_conf 7898434681278107999971-788-------8579987872---566520---6899999974216761-94399998 Q gi|254781016|r 48 PLNNSLSLSLGHLGTITHITVI-DSD-------ADCIILNGQK---ISSQSS---FFKKTTQFCDLFRQFS-KVYFLIET 112 (355) Q Consensus 48 P~n~SiS~TL~~~~T~T~v~~~-~~~-------~d~~~lnG~~---~~~~~~---~~~ri~~~l~~~r~~~-~~~~~I~S 112 (355) |=-++|-+.|+...--+-.... ... +..+...|+. ++...+ ..+-..++++.+.... -..+++.- T Consensus 14 pGFD~LG~aL~~~~~~~~~~~~~~e~~~~~nnCk~~~~~~g~~~~~iP~~p~~N~~yq~~~~~~~~~g~~~~~~p~k~~~ 93 (359) T TIGR00191 14 PGFDVLGLALSLYNGLTVTDVVAVESDDTPNNCKFEIEAEGEDVEKIPTEPDDNLIYQVAKRFLDQLGKRNFIKPVKLTL 93 (359) T ss_pred CCCCEEECEECCCCCEEEECCCCHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 44001201003334405504664111058874126888622451258896121056889999999818777888768998 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH----CCCC-----CHHHHCCCCHHCCCCCCC------ Q ss_conf 5023321101232247999999999981889998899988652----1353-----034310562002578987------ Q gi|254781016|r 113 SNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL----GSGS-----ACRSFYRGFCEWICGTDQ------ 177 (355) Q Consensus 113 ~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl----GSGS-----A~RSi~GG~v~W~~g~~~------ 177 (355) +|++|.++||+|||++.+|-+.|++++++++++..++-.+|-. .||| .+-+++|||..--...+. T Consensus 94 ~~~iP~grGLGSSAaaiVaa~~a~ne~~g~~l~~~~~L~~a~~~E~~~SGs~HpDNvaPa~~GG~~~~~~~~~~Pqever 173 (359) T TIGR00191 94 EKNIPLGRGLGSSAAAIVAALLAANELAGLPLSKEELLDLALELEGRISGSIHPDNVAPALLGGFQLAVKEDDKPQEVER 173 (359) T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHH T ss_conf 53851013666389999999999999838898989999999998643057757134678851662798842798761135 Q ss_pred ---CCCCEEEEECC--------------------CCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH Q ss_conf ---65441310156--------------------6686-42158999728766752105679887618568999973055 Q gi|254781016|r 178 ---NGMDSFAVPFN--------------------NQWP-DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQIST 233 (355) Q Consensus 178 ---~~sds~a~~~~--------------------~~~~-dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~ 233 (355) --..+..+|.. -.|. ++..++++.+.+ | ||..-+..--. .|-.+=+-..-. T Consensus 174 rei~~~~~~~~P~~GedtGlvPPlPPtdiGrhvkyqWn~~~~~v~aIP~~~---~-sT~~AR~vLPk-~Y~~~d~v~n~~ 248 (359) T TIGR00191 174 REIVLLEVLKIPIFGEDTGLVPPLPPTDIGRHVKYQWNSKLKVVLAIPNIE---V-STAEARAVLPK-AYPRQDLVFNLS 248 (359) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCC---C-CHHHHHHHCCC-CCCHHHHHHHHH T ss_conf 666566641488987666567977852234420020167651799817842---0-56889620555-467889999887 Q ss_pred HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEEEEEEC Q ss_conf 0999999998099-999999999999989998703899568657889999999999742896-19999777981799955 Q gi|254781016|r 234 DLAHIKQAIIDQD-FIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNLKLLFT 311 (355) Q Consensus 234 ~~~~~~~ai~~~D-f~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv~il~~ 311 (355) ++.-|+.|+-.+| ...|+.++|+| +||+=.+.+ +=|+-.+|-.-|+.-+..|. ....+ .|||.+..||. T Consensus 249 ~l~~l~~A~~~~dP~~~l~~~~~kD--~~hqPyR~~------L~P~l~~i~sCv~~~~~~Ga~~~~iS-GsGPTila~~~ 319 (359) T TIGR00191 249 HLAGLVHALYQKDPKPDLLAIMMKD--RIHQPYRES------LIPNLFKIKSCVQAALEKGALGITIS-GSGPTILALAD 319 (359) T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCC--CCCCCCCCC------CCCHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHHCCC T ss_conf 7877775610799628999997338--501163422------36148998999999973586488711-20105551688 Q ss_pred HHH-HHHHHHHHHH Q ss_conf 898-9999999763 Q gi|254781016|r 312 HKI-EETIKQFFPE 324 (355) Q Consensus 312 ~~~-~~~i~~~l~~ 324 (355) +.. .+.+.+.+-+ T Consensus 320 e~~G~~~~~~~~~~ 333 (359) T TIGR00191 320 EEFGTEQKAQDLLE 333 (359) T ss_pred CCCCHHHHHHHHHH T ss_conf 88775777699987 No 15 >PRK03817 galactokinase; Provisional Probab=99.18 E-value=5.5e-07 Score=69.24 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=149.3 Q ss_pred EEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCC---------EEEECCEECCCCCHHHHHHHH Q ss_conf 89748842488116776701175789843468127810799997178885---------799878725665206899999 Q gi|254781016|r 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDAD---------CIILNGQKISSQSSFFKKTTQ 95 (355) Q Consensus 25 ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d---------~~~lnG~~~~~~~~~~~ri~~ 95 (355) +++||--|=|+==+-=+ .--+.|.+.++. ++. +++.++++. .+.+|..+.. .....-+.. T Consensus 2 ~v~APGRV~LiGEH~Dy------~gg~vl~~AI~~-~~~--i~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~w~~yv~g 70 (351) T PRK03817 2 KVKSPGRVNLIGEHTDY------NDGYVLPFAIDR-YTV--LEIEKSDKFIFYSENFNETFELDKLEKT--NSWADYIKG 70 (351) T ss_pred EEECCCCEEEECCCEEE------CCCCEEEEEECC-EEE--EEEEECCCEEEEECCCCCCEEECCCCCC--CCHHHHHHH T ss_conf 69687137986388778------898679588212-499--9999789189998888872340455667--976889999 Q ss_pred HHHHHHHHC-C-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC------CCC----CHHH Q ss_conf 974216761-9-439999850233211012322479999999999818899988999886521------353----0343 Q gi|254781016|r 96 FCDLFRQFS-K-VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG------SGS----ACRS 163 (355) Q Consensus 96 ~l~~~r~~~-~-~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG------SGS----A~RS 163 (355) .+..+++.. . ..+.|.-.-++|.++||.||||--.|++.|+.++++++++..++..+++.. .-+ -+-| T Consensus 71 vi~~l~~~g~~~~G~~i~i~s~iP~gsGLsSSAAl~va~~~al~~~~~~~l~~~~la~~~~~aE~~~~G~~~G~mDq~as 150 (351) T PRK03817 71 VIWVLEKEGYEVGPVKGKVSSNLPLGAGLSSSAALEVAVAYALNEYYNLNLSKLELALIARKAENEFVGVPCGIMDQFAV 150 (351) T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 99999970999887499997788898887648999999999999984899999999999999999861588508889999 Q ss_pred HCCC--CHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH----------------------- Q ss_conf 1056--200257898765441310156668642158999728766752105679887----------------------- Q gi|254781016|r 164 FYRG--FCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITR----------------------- 218 (355) Q Consensus 164 i~GG--~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v----------------------- 218 (355) ++|+ .+.|.... ....-.++++. .++ .+++++...|.-..+......+ T Consensus 151 ~~g~~~~~~~~d~~---~~~~~~~~~~~--~~~--~~vv~~s~~~~~l~~~~yn~r~~~~~~a~~~l~~~~~~~~~~~~l 223 (351) T PRK03817 151 AFGKKDHAIFLDTM---TLEYEYIPFPL--KDY--EILVFDSGVKHELASSEYNERRKECEEALKILGKKSFREVTEEDL 223 (351) T ss_pred HHCCCCEEEEECCC---CCCEEEECCCC--CCE--EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCHHHH T ss_conf 85457738982168---88447633688--775--899997797543451067899999999999966000443169999 Q ss_pred -HHCHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CC Q ss_conf -6185689999730---550999999998099999999999999989998703899568657889999999999742-89 Q gi|254781016|r 219 -HHSPFFTQWTQQI---STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QS 293 (355) Q Consensus 219 -~tSp~y~~r~~~~---~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g 293 (355) +-.+.+..|+..+ ..++.+..+|++++|++.||+++-.+-..|-..+--| +|+.-. .|...+. .| T Consensus 224 ~~l~~~~~~r~~hv~~E~~rv~~~~~al~~~d~~~lG~Lm~~sh~sLr~~~~vS-------~~eld~---lv~~a~~~~G 293 (351) T PRK03817 224 EKLPPLLRKRAGHVLRENERVLKVRDALKEGDVETLGKLLYESHESLADLYEVS-------CEELDF---IVEFLLGKLG 293 (351) T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-------CHHHHH---HHHHHHHCCC T ss_conf 857688999999999888999999999873899999999999889998866489-------778999---9999986089 Q ss_pred CEEEEEECC--CCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 619999777--98179995589899999997632100368887512000 Q gi|254781016|r 294 IPIYFTLDA--GPNLKLLFTHKIEETIKQFFPEITIIDPLDSPDLWSTK 340 (355) Q Consensus 294 ~~v~fT~DA--GPNv~il~~~~~~~~i~~~l~~i~~~~~~~~~~~~~~~ 340 (355) .--+=-+.| |=-+..|++++.++.+.+.+.+-..-.-...|+.++.+ T Consensus 294 a~GakltGaG~GGc~vaLv~~~~~e~~~~~v~~~Y~~~~~~~~~~~~~~ 342 (351) T PRK03817 294 IYGARLVGGGFGGSVIVLVKKGAFESIGEELLEEYTKKFGITPEYFKVE 342 (351) T ss_pred CEECEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 8675331488755899997546799999999999999639998199998 No 16 >PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Probab=99.18 E-value=1.4e-07 Score=73.41 Aligned_cols=283 Identities=16% Similarity=0.099 Sum_probs=154.1 Q ss_pred EEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 78974884248811677670117578984346812781079999717888579987872566520689999997421676 Q gi|254781016|r 24 SSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQF 103 (355) Q Consensus 24 ~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~ 103 (355) ..|.|-.|+.|= =.|||+.-+. .-.|+-..+| ++-+-+++..+..+-.+.-++...+..+. .-|.+.++.+++. T Consensus 6 l~apAKINL~L~-V~~kr~dGyH--~l~s~~~~i~-l~D~i~i~~~~~~~i~~~~~~~~~~~~~~--Nlv~ka~~~l~~~ 79 (308) T PRK02534 6 LIAPAKINLHLE-ILGDRPDGFH--ELAMVMQSID-LADRLEFRNNGDGTIKLRCDHPDLSTDDD--NLIYRAAQLLRKR 79 (308) T ss_pred EEECEEEECCEE-CCCCCCCCCC--EEEEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCCCCCC--CHHHHHHHHHHHH T ss_conf 980436810430-1887999985--0478999816-88399999989998899868876888986--4999999999996 Q ss_pred CCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCC Q ss_conf 194---39999850233211012322479999999999818899988999886521353034310562002578987654 Q gi|254781016|r 104 SKV---YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGM 180 (355) Q Consensus 104 ~~~---~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~s 180 (355) .+. .+.|.-+-|+|.+|||+++||-.||+.++++++++++++.+++..+|.....--.-.++||.+. ..|.++. T Consensus 80 ~~~~~~gv~I~l~KnIPv~aGLGGGSsdAAa~L~~Ln~l~~~~ls~~~L~~ia~~lGsDVPffl~g~~a~-~~G~Ge~-- 156 (308) T PRK02534 80 FPFAELGVDITLEKNIPIGAGLAGGSSDAAAVLVGLNLLWGLGLTQPELESLAAELGSDVPFCIAGGTQL-CFGRGEI-- 156 (308) T ss_pred CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCEEE-EECCCCE-- T ss_conf 3999886589998368866788840689999999999984799998999998751168855022085189-8358867-- Q ss_pred CEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-- Q ss_conf 413101566686421589997287667521056798876185689999730550999999998099999999999999-- Q gi|254781016|r 181 DSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA-- 258 (355) Q Consensus 181 ds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~da-- 258 (355) ...++ ..+++.+ +++...+.. .||.-+=..... .+....-..+..+......+...+|.... ...+. T Consensus 157 -l~pl~---~~~~~~~-llv~~P~~~--vST~~~y~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~ 225 (308) T PRK02534 157 -LEPLP---DLDSLGV-VLAKYPSLS--VSTPWAYKTYRQ--QFGDTYLSDEEDFEQRRQALRSGSLLQAI--SAKDPPP 225 (308) T ss_pred -EEECC---CCCCCEE-EEEECCCCC--CCCHHHHHHHHH--HCCCCCCCCCHHHHHHHHHCCCCHHHHHH--HHCCHHH T ss_conf -67888---7765649-999589998--274999999987--50343357603455555421310688988--7347898 Q ss_pred --HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHC-CC-EEEEEECCCCEEEEEEC-HHHHHHHHHHHHHCCCCCCCCC Q ss_conf --9899987038995686578899999999997428-96-19999777981799955-8989999999763210036888 Q gi|254781016|r 259 --LKMHATMIAASPPLLYWQKETIQGMERVWDARQQ-SI-PIYFTLDAGPNLKLLFT-HKIEETIKQFFPEITIIDPLDS 333 (355) Q Consensus 259 --l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~-g~-~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i~~~~~~~~ 333 (355) |.|-...+.-. |+-.+++ ..++.. |- .+-.| ..||.|+-+|. +++++++.+.|.+ -.+.+| T Consensus 226 l~NdLe~~a~~~~-------P~i~~~~---~~L~~~~Ga~~~~mS-GSGstvFglf~~~~~A~~a~~~l~~---~~p~~~ 291 (308) T PRK02534 226 LRNDLQKVVLPEY-------PQVAKLL---ELLSSLPGCLGTMMS-GSGPTCFALFEDQEQAEQALEQVRE---AFADPG 291 (308) T ss_pred HHHHHHHHHHHCC-------HHHHHHH---HHHHHCCCCCEEEEE-CHHHHHEEEECCHHHHHHHHHHHHH---HCCCCC T ss_conf 8643699988739-------4999999---999744798888997-2410003797899999999999998---678999 Q ss_pred CCCCCCC Q ss_conf 7512000 Q gi|254781016|r 334 PDLWSTK 340 (355) Q Consensus 334 ~~~~~~~ 340 (355) -+.|+.+ T Consensus 292 ~~~~v~~ 298 (308) T PRK02534 292 LDAWVCQ 298 (308) T ss_pred CCEEEEC T ss_conf 8689751 No 17 >TIGR00549 mevalon_kin mevalonate kinase; InterPro: IPR006205 Mevalonate kinase (2.7.1.36 from EC) is well-characterised among the Eukaryotes, where it plays a role in the synthesis of isopentanyl pyrophosphate, a common intermediate for a number of pathways including cholesterol biosynthesis. It is also involved in mevalonate catabolism. Close homologs are found in the Archaea. A bacterial example is found in the Lyme disease spirochete Borrelia burgdorferi, but is not necessarily the same biosynthetic enzyme.; GO: 0004496 mevalonate kinase activity, 0005524 ATP binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm. Probab=99.09 E-value=1.9e-08 Score=79.45 Aligned_cols=191 Identities=23% Similarity=0.168 Sum_probs=135.2 Q ss_pred HHHHH-HHHHHHHHCCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHHC- Q ss_conf 99999-97421676194---39999850233211012322479999999999818---------899988999886521- Q gi|254781016|r 91 KKTTQ-FCDLFRQFSKV---YFLIETSNNIPTKAGLASSASGFAALTLALFRIYS---------IPEKSESLSRVARLG- 156 (355) Q Consensus 91 ~ri~~-~l~~~r~~~~~---~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~---------~~~~~~~lS~lARlG- 156 (355) .-|.. ++.++...... .+.|+-.-..|.++||+||||...|++.|+.+++| .+++.+++..+|..+ T Consensus 112 ~y~~~~~~~~~~~~~~~~~~p~~~~i~S~iP~g~GLGSSAAv~vA~~~al~~~~g~~~n~~s~L~~~~~~~~~~~a~~~E 191 (345) T TIGR00549 112 SYIAAAALSKLSELNEPPKTPLEIEIESEIPPGRGLGSSAAVAVALIRALADYFGIRSNDLSKLSELSKEELAKLANEAE 191 (345) T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999999997502675548727998505366555634799999999999987044668621024689889999998877 Q ss_pred -------CC-CCHHHHCCCCHHCCCCCC-CCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH----HCHH Q ss_conf -------35-303431056200257898-7654413101566686421589997287667521056798876----1856 Q gi|254781016|r 157 -------SG-SACRSFYRGFCEWICGTD-QNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRH----HSPF 223 (355) Q Consensus 157 -------SG-SA~RSi~GG~v~W~~g~~-~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~----tSp~ 223 (355) || -+.=+.|||++...++.. +.. .... ++ ...++|.+++.+ .+|.-|-..|. ..|- T Consensus 192 ~~~HG~pSG~D~~~~~~g~~~~f~k~~~~~~~-----~~~~---~~-~~~~~i~dtg~~--~~T~~~V~~V~~l~~~~p~ 260 (345) T TIGR00549 192 KIVHGKPSGIDTATSTYGGPVLFEKGEGVEET-----KLIS---LD-ALYLVIADTGVS--GSTKEAVAKVRQLLERFPE 260 (345) T ss_pred HHHCCCCCCCCCEEEECCCEEEEECCCCCCEE-----EECC---CC-CCEEEEEECCCC--CCHHHHHHHHHHHHHHCHH T ss_conf 65179985312212344866898768887314-----4027---89-960899834877--7489999999998751716 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCE Q ss_conf 8999-9730550999999998099-------9999999999999899987038995686578899999999997428961 Q gi|254781016|r 224 FTQW-TQQISTDLAHIKQAIIDQD-------FIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIP 295 (355) Q Consensus 224 y~~r-~~~~~~~~~~~~~ai~~~D-------f~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~ 295 (355) +-.. ++....-..+..++|.++| ++.||+++..+=-.|+++=.+. -++=+.|+..|+.|-. T Consensus 261 ~~~~~~~~~g~l~~~a~~a~~~~d~~~~~ek~~~lg~lm~~nq~lL~~lGVS~-----------~~ld~l~~~~~~~GAl 329 (345) T TIGR00549 261 LIDAIMDAIGELTKEAKAALEDGDEVEDSEKVESLGELMNINQGLLKALGVST-----------PKLDQLVELARKAGAL 329 (345) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHCCCC T ss_conf 89999999999999999999718831035589999999999998888707985-----------7999999999867974 Q ss_pred EE-EEECCCC Q ss_conf 99-9977798 Q gi|254781016|r 296 IY-FTLDAGP 304 (355) Q Consensus 296 v~-fT~DAGP 304 (355) -+ -| .||- T Consensus 330 GaKlT-GaG~ 338 (345) T TIGR00549 330 GAKLT-GAGG 338 (345) T ss_pred EEEEC-CCCC T ss_conf 63101-5777 No 18 >COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Probab=98.95 E-value=4.3e-07 Score=69.95 Aligned_cols=223 Identities=16% Similarity=0.231 Sum_probs=128.6 Q ss_pred CCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 7810799997178885799878725665206899999974216761943--99998502332110123224799999999 Q gi|254781016|r 59 HLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVY--FLIETSNNIPTKAGLASSASGFAALTLAL 136 (355) Q Consensus 59 ~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~~--~~I~S~N~fPtaaGLASSASgfAALa~Al 136 (355) ++.++.+|+..+ ....-|.+... .+.+.+.++.+++..+.. ++++.+..+|.+.||.||++...||+.|+ T Consensus 28 dL~v~a~v~~~~----~~~~~~~~~~d----~~li~~~~~~v~e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~ 99 (278) T COG1685 28 DLKVEAEVRLSD----EGKVRGEPEGD----TRLIERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAV 99 (278) T ss_pred CCEEEEEEEECC----CCCCCCCCCCC----HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH T ss_conf 445899999857----65313677787----4799999999998729886559998257876667424589999999999 Q ss_pred HHHHCCCCCHHHHHHHH---HHCCC--------CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCC Q ss_conf 99818899988999886---52135--------30343105620025789876544131015666864215899972876 Q gi|254781016|r 137 FRIYSIPEKSESLSRVA---RLGSG--------SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDRE 205 (355) Q Consensus 137 ~~~~~~~~~~~~lS~lA---RlGSG--------SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~ 205 (355) .++.+.+.++-++-+++ -+..| -||-|.|||+++=.. +-+.+.....-+++.++|++. +. T Consensus 100 ~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~GG~~iTDN-------~~m~Ilrr~~~~~~~vlI~~p--~~ 170 (278) T COG1685 100 LKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLGGIVITDN-------RKMRILRRLDLPELTVLILAP--GE 170 (278) T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCEEEECC-------HHHEEHHCCCCCCCEEEEEEC--CC T ss_conf 997189888148888777988745944741406889997588688616-------111000003467740899816--87 Q ss_pred CCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH Q ss_conf 67521056798876185689999730550999999998099999999999999989998703899568657889999999 Q gi|254781016|r 206 KKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMER 285 (355) Q Consensus 206 K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~ 285 (355) |.-+...--.++...+|+++.-++.+ ..+||- .+|.+..+.-.+- +=| -.+ . T Consensus 171 k~~~~~vdv~~~r~~a~~~e~A~~lA-----------~~G~~~--------~Am~lNG~~y~~a--LG~----~~e---~ 222 (278) T COG1685 171 KRLSANVDVNRLRLIAPVVEEAFRLA-----------LKGEYF--------KAMVLNGILYCSA--LGY----DLE---P 222 (278) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH-----------HCCCHH--------HHHHHHHHHHHHH--HCC----CHH---H T ss_conf 65255478789877438999999998-----------535288--------8888767998987--089----828---9 Q ss_pred HHHHHHCC-CEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCC Q ss_conf 99974289-619999777981799955898999999976321003 Q gi|254781016|r 286 VWDARQQS-IPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITIID 329 (355) Q Consensus 286 v~~~R~~g-~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~~ 329 (355) +.+.-+.| .-+..+ ..||.++-|+.+. +.+.+...+++.+. T Consensus 223 ~~~ale~GA~~aglS-GtGPa~~Al~~~~--~~v~ea~~~~G~V~ 264 (278) T COG1685 223 ALKALEAGAAAAGLS-GTGPAYFALTEDP--EEVAEAWSKIGDVI 264 (278) T ss_pred HHHHHHCCCCEECCC-CCCCCEEEEECCC--HHHHHHHHHCCEEE T ss_conf 999986354064357-8897169995493--78999998678699 No 19 >TIGR01920 Shik_kin_archae shikimate kinase; InterPro: IPR010189 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the shikimate pathway of aromatic amino acids biosynthesis. It converts shikimate to shikimate 3-phosphate (3-phosphoshikimate). This part of the pathway leads to the biosynthesis of chorismate, the precursor of aromatic amino acids, folates, ubiquinones, and other aromatic compounds. The shikimate pathway links metabolism of carbohydrates to biosynthesis of the aromatic amino acids phenylalanine, tyrosine, tryptophan and their derivatives in microorganisms and plants . In a sequence of seven enzymatic reactions, D-erythrose 4-phosphate (E4P), an intermediate of the pentose phosphate pathway and phosphoenol pyruvate (PEP), a glycolytic intermediate, are converted to chorismate. The shikimate pathway is present in bacteria, archaea, fungi and plants. The absence of the shikimate pathway in animals makes it an attractive target for non-toxic herbicides, antimicrobial and antifungal agents. Shikimate kinase enzymes present an example of convergent evolution via enzyme recruitment from an unrelated group. This group represents shikimate kinases of the archaeal type. Members have no sequence similarity with the typical form of shikimate kinase (PIRSF000702 from PIRSF, IPR000623 from INTERPRO) found in bacteria and eukaryotes, but are instead distantly related to homoserine kinases, which belong to the GHMP kinase domain superfamily (GHMP = galactose, homoserine, mevalonate, and phosphomevalonate) . All known non-archaeal shikimate kinases (the typical form) belong to the non-homologous, structurally unrelated nucleoside monophosphate (NMP) kinase domain superfamily . Nomenclature note: the name AroK is used for non-homologous shikimate kinases of both the archaeal and bacterial types. ; GO: 0004765 shikimate kinase activity, 0009073 aromatic amino acid family biosynthetic process, 0005737 cytoplasm. Probab=98.94 E-value=9.8e-07 Score=67.46 Aligned_cols=227 Identities=16% Similarity=0.195 Sum_probs=143.0 Q ss_pred CCCEEEEEEECCC--CCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 7810799997178--88579987872566520689999997421676194--3999985023321101232247999999 Q gi|254781016|r 59 HLGTITHITVIDS--DADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTL 134 (355) Q Consensus 59 ~~~T~T~v~~~~~--~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~ 134 (355) ++.|+.+|...++ .+=....++.+... . .-|.+.++.+++..+. .+.++.+-.+|.++||-|||+...||+. T Consensus 23 dL~v~a~V~~~~d~~~~v~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~~~~v~~~seiP~g~GLKSSSA~~nAlv~ 98 (273) T TIGR01920 23 DLKVEAKVRLSDDGEAKVSLKVRGNPELD-P---RLIERILTALIEKFGIVEGLEVEVESEIPLGSGLKSSSALVNALVL 98 (273) T ss_pred CCEEEEEEEEECCCCCCEEEEECCCCCCC-H---HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 86079999970688543147766765479-7---8999999998985388862489996176788664378999999999 Q ss_pred HHHHHHC--CCCCHHHHHHHHHH---CCC--------CCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCC-CEEEEEE Q ss_conf 9999818--89998899988652---135--------30343105620025789876544131015666864-2158999 Q gi|254781016|r 135 ALFRIYS--IPEKSESLSRVARL---GSG--------SACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPD-LRIGLLK 200 (355) Q Consensus 135 Al~~~~~--~~~~~~~lS~lARl---GSG--------SA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~d-l~~~i~i 200 (355) |..++.+ .+.+.-++-++.=. .-| -||-|.+||+++= |+ .-+.+...+..++ +..+|+| T Consensus 99 A~~~~~gva~~~~~~~~~~l~a~~S~~AG~s~TGAfDDa~AS~~GG~~~T-----DN--~~~~ilk~~~~~~~l~~~vl~ 171 (273) T TIGR01920 99 AVLKAKGVAEEIDDIDILRLGAELSKEAGVSVTGAFDDAAASYLGGIVIT-----DN--RKMKILKRDKLEGNLTAVVLV 171 (273) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEE-----EC--CEEEEEEECCCCCCCEEEEEE T ss_conf 99986123421773368999999888668515305889999860820052-----14--302465521678986589997 Q ss_pred ECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH Q ss_conf 72876675210567988761856899997305509999999980999999999999999899987038995686578899 Q gi|254781016|r 201 IIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETI 280 (355) Q Consensus 201 v~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~ 280 (355) ....+ ....+. .++.+.+++++.=++. =.++||- .||.|-.+....- +-| -+ T Consensus 172 P~~~~--~~~~~~-~~~~~~~~~~e~a~~~-----------A~~G~y~--------~Am~lNG~~y~~~--Lgy-p~--- 223 (273) T TIGR01920 172 PKEER--RENVDL-NRLRKISPVVEEAFKL-----------ALKGEYL--------KAMVLNGVAYATA--LGY-PL--- 223 (273) T ss_pred CCCCC--CCCCCH-HHHHHHHHHHHHHHHH-----------HHCCCCH--------HHHHHHHHHHHHH--HCC-CH--- T ss_conf 68766--767688-8888666899999999-----------6468807--------8999999999988--189-86--- Q ss_pred HHHHHHHHHHHCC-CEEEEEECCCCEEEEEECHHHHHHHHHHHHHC--CCC Q ss_conf 9999999974289-61999977798179995589899999997632--100 Q gi|254781016|r 281 QGMERVWDARQQS-IPIYFTLDAGPNLKLLFTHKIEETIKQFFPEI--TII 328 (355) Q Consensus 281 ~ii~~v~~~R~~g-~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i--~~~ 328 (355) +.+.+.-+.| .-+..| ..||.++-++.+.+.+.+.+.+.+. +.| T Consensus 224 ---e~~~~al~~GA~~aG~S-G~GPsy~A~~~~pe~~~~~~~~~~~G~G~V 270 (273) T TIGR01920 224 ---EPASKALEKGAAVAGLS-GKGPSYFALTEEPEEEEVAEALEEFGFGRV 270 (273) T ss_pred ---HHHHHHHHCCCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHCCCEEE T ss_conf ---48999973894388630-575568997306864899999974697079 No 20 >PRK00555 galactokinase; Provisional Probab=98.88 E-value=1.6e-05 Score=59.02 Aligned_cols=275 Identities=15% Similarity=0.105 Sum_probs=144.0 Q ss_pred CCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCE-------------EEECCEECCCCCH Q ss_conf 637897488424881167767011757898434681278107999971788857-------------9987872566520 Q gi|254781016|r 22 EKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADC-------------IILNGQKISSQSS 88 (355) Q Consensus 22 ~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~-------------~~lnG~~~~~~~~ 88 (355) ++.|+.||=-|=||==+=-++.-..||. .++ .+| .+.+.+.+.+. +.++..+.+ ... T Consensus 1 ~~~~~sAPGRVnliGEH~DY~gG~VLp~------AI~-~~~--~v~~~~~~~~~i~~~s~~~~~~~~~~~~~~~~~-~~~ 70 (363) T PRK00555 1 MTVSYAAPGRINLIGEHTDYNLGFALPI------ALP-QRT--VVTFTPEHTGAITARSDRADGSVRIPLDTTPGQ-VTG 70 (363) T ss_pred CCEEEECCCCEEEEECCEEECCCEEEEE------EHH-HCE--EEEEEECCCCEEEEEECCCCCCEEEECCCCCCC-CCC T ss_conf 9269976665897628757899746947------820-128--999998899869999768898679867768776-622 Q ss_pred HHHHHHHHHHHHHHH----CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC----C-- Q ss_conf 689999997421676----194399998502332110123224799999999998188999889998865213----5-- Q gi|254781016|r 89 FFKKTTQFCDLFRQF----SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGS----G-- 158 (355) Q Consensus 89 ~~~ri~~~l~~~r~~----~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGS----G-- 158 (355) ...-+.-.+..+++. .++.+.|.| ++|.++||.||||--.|++.|+..+++.+++..++..+|...- | T Consensus 71 W~~y~~gv~~~l~~~g~~~~g~~~~I~s--~IP~gaGLSSSAAl~va~~~al~~~~~~~~~~~ela~la~~aE~~~~G~~ 148 (363) T PRK00555 71 WAAYAAGVIWALRGAGHPVPGGAMSITS--DVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENDYVGAP 148 (363) T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 7899999999999718998885289977--88876674418999999999999970899999999999999997517888 Q ss_pred ----CCHHHHCCC---CHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHH-------HHH-------- Q ss_conf ----303431056---2002578987654413101566686421589997287667521056-------798-------- Q gi|254781016|r 159 ----SACRSFYRG---FCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREA-------MEI-------- 216 (355) Q Consensus 159 ----SA~RSi~GG---~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~g-------m~~-------- 216 (355) --.=|++|. +..-.. .......++++... ..+.+++++...++-..... ++. T Consensus 149 ~GiMDQ~as~~g~~g~al~id~----~~l~~~~v~~~~~~--~~~~~vi~dS~~~~~~~~~~y~~R~~ec~~aa~~l~~~ 222 (363) T PRK00555 149 TGLLDQLAALFGAPKTALLIDF----RDLTVRPVAFDPDA--CGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVS 222 (363) T ss_pred CCCHHHHHHHCCCCCEEEEECC----CCCCEECCCCCCCC--CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCH T ss_conf 7505478886278883987326----78853214447776--77699997667644345323589999999999985912 Q ss_pred -------------HHHHCHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH Q ss_conf -------------876185689999730---5509999999980999999999999999899987038995686578899 Q gi|254781016|r 217 -------------TRHHSPFFTQWTQQI---STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETI 280 (355) Q Consensus 217 -------------~v~tSp~y~~r~~~~---~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~ 280 (355) .....+....|...+ .+|+.+...|++++|++.||+++-..-..|--.+--|. |+-- T Consensus 223 ~lr~~~~~~l~~l~~~~~~~~~~Ra~hv~~E~~RV~~~~~al~~~d~~~~G~Lm~~SH~Slrd~yevS~-------~elD 295 (363) T PRK00555 223 SLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFVAALADSDFTAAGQILTASHASMRDDFAITT-------ERID 295 (363) T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-------HHHH T ss_conf 354420768999875058888888888888888999999998739999999999999999998651796-------8799 Q ss_pred HHHHHHHHHHHCC-CEEEEEECC--CCEEEEEECHHHHHHHHHHHHHC Q ss_conf 9999999974289-619999777--98179995589899999997632 Q gi|254781016|r 281 QGMERVWDARQQS-IPIYFTLDA--GPNLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 281 ~ii~~v~~~R~~g-~~v~fT~DA--GPNv~il~~~~~~~~i~~~l~~i 325 (355) ..|+..++.| +-+=.| .| |=-+..|++++.++.+.+.+.+- T Consensus 296 ---~lv~~a~~~Ga~GARlt-GaGfGGc~vaLv~~~~~~~~~~~v~~~ 339 (363) T PRK00555 296 ---LIADSAVRAGALGARMT-GGGFGGCVIALVPADRARDVADTVRRA 339 (363) T ss_pred ---HHHHHHHHCCCCEEEEE-CCCCCEEEEEEECHHHHHHHHHHHHHH T ss_conf ---99999997699278897-378874899996687899999999999 No 21 >PRK05322 galactokinase; Provisional Probab=98.73 E-value=4.7e-05 Score=55.72 Aligned_cols=302 Identities=14% Similarity=0.103 Sum_probs=154.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCC-CEEEEEEE-CCC--CCC--EEE Q ss_conf 488988887403467877637897488424881167767011757898434681278-10799997-178--885--799 Q gi|254781016|r 4 SLRHILHRYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHL-GTITHITV-IDS--DAD--CII 77 (355) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~-~T~T~v~~-~~~--~~d--~~~ 77 (355) .++++..+|...-+..+. .-++||--|=||==+=-++.-..||.-=....+.... ..+..+.+ +.+ +.+ +|- T Consensus 2 ~~~~l~~~F~~~fg~~p~--~~~~APGRVnLiGeHtDY~gg~Vlp~AI~~~~~ia~~~~~d~~i~i~s~~~~~~~~~~~~ 79 (387) T PRK05322 2 NKEELKKKFAEVFGEEED--RVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFD 79 (387) T ss_pred CHHHHHHHHHHHHCCCCC--EEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCEEEEE T ss_conf 889999999998689989--899764763656144305998179588003749999988998799998988877549987 Q ss_pred ECCEECCCCCHHHHHHHHHHHHHHHH-CC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 87872566520689999997421676-19--4399998502332110123224799999999998188999889998865 Q gi|254781016|r 78 LNGQKISSQSSFFKKTTQFCDLFRQF-SK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVAR 154 (355) Q Consensus 78 lnG~~~~~~~~~~~ri~~~l~~~r~~-~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lAR 154 (355) ++....+....-..-+.-.+..+++. .. ..+.+...-++|.++||.||||--.|.+.++..+++++++..++..+|+ T Consensus 80 ~~~~~~~~~~~W~~Yv~Gvi~~l~~~g~~~~~G~d~~I~s~IP~gaGLSSSAAl~va~~~al~~~~~~~l~~~ela~la~ 159 (387) T PRK05322 80 LDDLSYDKEDDWANYPKGVLKYLQEAGYKIDHGFDLYIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLDLVKLGQ 159 (387) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 33258788766677999999999973998778738999578888777530889999999999997389999999999999 Q ss_pred HCC----CCCH------HHHCCCC--HHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCH---------- Q ss_conf 213----5303------4310562--00257898765441310156668642158999728766752105---------- Q gi|254781016|r 155 LGS----GSAC------RSFYRGF--CEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSRE---------- 212 (355) Q Consensus 155 lGS----GSA~------RSi~GG~--v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~---------- 212 (355) ..- |-.| -|++|.- +++.- . .....-.+|++ +.++ .+++++...|+.-.+. T Consensus 160 ~aE~~~~G~~~GiMDQ~as~~g~~~~al~iD-~--~~l~~~~~p~~--~~~~--~~vi~~s~~~~~l~~s~Yn~R~~ec~ 232 (387) T PRK05322 160 KVENEFIGVNSGIMDQFAIGMGKKDHAILLD-T--NTLEYEYVPLD--LGDY--VIVIMNTNKRRELADSKYNERRAECE 232 (387) T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCEEEEEC-C--CCCCEEEECCC--CCCC--EEEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 9988871698742346777742577488622-7--88843661257--8882--79998579764346321256899999 Q ss_pred -HHHHHHH---------H-------------CHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf -6798876---------1-------------85689999730---55099999999809999999999999998999870 Q gi|254781016|r 213 -AMEITRH---------H-------------SPFFTQWTQQI---STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMI 266 (355) Q Consensus 213 -gm~~~v~---------t-------------Sp~y~~r~~~~---~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~ 266 (355) +.+...+ - .+....|+..+ ..+..+..+|++++|++.||+++-.+-..|--.+. T Consensus 233 ~a~~~l~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~Ra~Hvv~En~Rv~~a~~aL~~~d~~~~G~Lm~~sH~sLrd~ye 312 (387) T PRK05322 233 KALKELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYE 312 (387) T ss_pred HHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 99999876249423552999999988754256888999999998779999999998669999999999998999998662 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHH-HCCC-EEEEEECCC--CEEEEEECHHHHHHHHHHHHHC Q ss_conf 389956865788999999999974-2896-199997779--8179995589899999997632 Q gi|254781016|r 267 AASPPLLYWQKETIQGMERVWDAR-QQSI-PIYFTLDAG--PNLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 267 ~s~P~~~Y~~~~t~~ii~~v~~~R-~~g~-~v~fT~DAG--PNv~il~~~~~~~~i~~~l~~i 325 (355) -|. |+- =.+|...+ ..|. -+=.| .|| =-+..|++++.++.+.+.+.+- T Consensus 313 vS~-------~el---D~Lv~~a~~~~Ga~GARmt-G~GfGGc~vaLv~~~~~~~~~~~v~~~ 364 (387) T PRK05322 313 VTG-------LEL---DTLVEAAWKQPGVLGARMT-GAGFGGCAIAIVKKDEVEAFKENVGKA 364 (387) T ss_pred CCC-------HHH---HHHHHHHHHCCCCEECEEE-CCCCCEEEEEEECHHHHHHHHHHHHHH T ss_conf 798-------889---9999998763897377362-488822699996277899999999999 No 22 >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Probab=98.70 E-value=1.8e-05 Score=58.63 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=136.2 Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-----HHHCCCCCHH----HHCCCCHHCCCC Q ss_conf 1943999985023321101232247999999999981889998899988-----6521353034----310562002578 Q gi|254781016|r 104 SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRV-----ARLGSGSACR----SFYRGFCEWICG 174 (355) Q Consensus 104 ~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~l-----ARlGSGSA~R----Si~GG~v~W~~g 174 (355) .+-.+.|.+..+.|+++||++|+--.+|+..|+.++.|...+.+++... -.++.|-+=- -+|||+=.-... T Consensus 723 fg~GlEi~t~s~lP~GSGLGTSSILA~avl~Al~~~~g~~~d~~~l~~~vL~lEQlLtTGGGWQDQ~GG~~~GiK~~~s~ 802 (974) T PRK13412 723 FGSGIEITLLAAIPAGSGLGTSSILASTVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTE 802 (974) T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECC T ss_conf 08965888623788878863889999999999999838998889999999999988615882554016742660466337 Q ss_pred CCCCCCCEEEEECCCC---CCCCEEEEEEECCCCCCCCCCHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 9876544131015666---864215899972876675210567988761----856899997305509999999980999 Q gi|254781016|r 175 TDQNGMDSFAVPFNNQ---WPDLRIGLLKIIDREKKIGSREAMEITRHH----SPFFTQWTQQISTDLAHIKQAIIDQDF 247 (355) Q Consensus 175 ~~~~~sds~a~~~~~~---~~dl~~~i~iv~~~~K~vsSt~gm~~~v~t----Sp~y~~r~~~~~~~~~~~~~ai~~~Df 247 (355) ++..-.. .-.++++. -++|....+++.+++-.. ++.-.+..|.. +|---.=++...+.-.+|.+|+.++|| T Consensus 803 pg~~~~~-~V~~L~~~~~~~~el~~~llLvyTG~tRl-Ak~iL~~VVr~~~~r~~~~l~~l~~l~~~A~~m~~Al~~g~~ 880 (974) T PRK13412 803 AGFQQSP-LVRWLPDSLFTQPEYEDCHLLYYTGITRT-AKGILAEIVSSMFLNSTAHLQLLHEMKAHALDMAEAIQRGEF 880 (974) T ss_pred CCCCCCC-EEEEECCCHHHHHHHHHCEEEEECCCCHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 9986662-46760561766898861479999183065-768999999999845788999999999999999999982899 Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCC--EEEEEE-CHHHHHHHHHHHH Q ss_conf 9999999999998999870-38995686578899999999997428961999977798--179995-5898999999976 Q gi|254781016|r 248 IKLGEVAEKNALKMHATMI-AASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGP--NLKLLF-THKIEETIKQFFP 323 (355) Q Consensus 248 ~~l~~i~e~dal~mHa~~~-~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGP--Nv~il~-~~~~~~~i~~~l~ 323 (355) +.+|++.++- .+.|..|- .+. ++.--++|+.++.+--+... ..||- -+.++. .+..+++|++.|. T Consensus 881 ~~~g~~l~~~-W~q~k~Ldpg~~------~~~V~~l~~~i~p~~~G~kL----~GAGGGGfl~~~aKdp~~a~~ir~~L~ 949 (974) T PRK13412 881 EEFGRLVGKT-WEQNKALDSGTN------PAAVEAIIETIKDYTLGYKL----PGAGGGGYLYMVAKDPGAAERIRKILT 949 (974) T ss_pred HHHHHHHHHH-HHHHHCCCCCCC------CHHHHHHHHHHHHHHHCCCC----CCCCCCCEEEEEECCHHHHHHHHHHHH T ss_conf 9999999999-998750088999------58999999975223310414----556777679999748778999999997 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 32100368887512000002432023 Q gi|254781016|r 324 EITIIDPLDSPDLWSTKDSLSQKNSI 349 (355) Q Consensus 324 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 349 (355) +. .+.|+..++...++++-+. T Consensus 950 ~~-----~p~~~arfve~s~s~~g~~ 970 (974) T PRK13412 950 EQ-----APNPRARFVEMSLSDKGLQ 970 (974) T ss_pred HC-----CCCCCCEEEEEEECCCCCE T ss_conf 37-----9899828999886376753 No 23 >PRK05905 hypothetical protein; Provisional Probab=98.69 E-value=1.9e-05 Score=58.46 Aligned_cols=251 Identities=13% Similarity=0.073 Sum_probs=126.9 Q ss_pred CEEEECCCCEEEEECCCCCCH-HHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHH Q ss_conf 378974884248811677670-1175789843468127810799997178885799878725665206899999974216 Q gi|254781016|r 23 KSSAFLPSNIALCKYWGKRDS-KLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFR 101 (355) Q Consensus 23 ~~ta~ap~NIALIKYWGK~d~-~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r 101 (355) +-.+.|=.|+.| +=.|||.. - .=.-.|+=....+++-+-+++..+...+.+.+-+.........-.-+.+.+..++ T Consensus 2 k~ks~AKINL~L-~I~~kr~d~G--yH~l~S~f~~i~~l~D~i~i~~~~~~~~~i~~~~~~~~~~~~~~ni~~ka~~~l~ 78 (258) T PRK05905 2 KYKSYAKINLGL-SIYKKCKKVT--KHKLESIFILVENVYDDIEIEKIEKNIDDIHYFDETNEILVYSRLILVKTLEWLR 78 (258) T ss_pred CCCCCCCCCCCE-EECCCCCCCC--CEEEEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH T ss_conf 365355071452-2487788999--6689999999378872999998779987599708876677824699999999998 Q ss_pred HHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCHHHHCCCCHHCCCCCCCC Q ss_conf 7619--43999985023321101232247999999999981889998899988652-13530343105620025789876 Q gi|254781016|r 102 QFSK--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL-GSGSACRSFYRGFCEWICGTDQN 178 (355) Q Consensus 102 ~~~~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl-GSGSA~RSi~GG~v~W~~g~~~~ 178 (355) +..+ ..+.|.-+-++|.+|||+..+|-+||+-.++.+.+++ +..++..+|+. || -..-.++|.=..|..|.++. T Consensus 79 ~~~~~~~~~~I~l~K~IP~gAGLGGGSSnAAa~L~~L~~~~~l--~~~~l~~ia~~lGs-DVPffl~~~~~a~~~G~GE~ 155 (258) T PRK05905 79 DKYNIKNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEGI--NEINYKDVVNKLGS-DIPFFLSGYKTAYISDYGSQ 155 (258) T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHCC-CCCEEECCCCCEEEECCCCE T ss_conf 8609998669999945876567787527799999999986599--98999999986189-98879816873899878877 Q ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 54413101566686421589997287667521056798876185689999730550999999998099999999999999 Q gi|254781016|r 179 GMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA 258 (355) Q Consensus 179 ~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~da 258 (355) - .++... +.+.++++.. .. . .||.-.=...+.+.. .....+.......... ... .-. T Consensus 156 l-----~~l~~~-~~~~~llv~P--~~-~-~ST~~vy~~~~~~~~------~~~~~~~~~~~~~~~~----~~~---~~~ 212 (258) T PRK05905 156 V-----EDLIGQ-FKLTYKVIFM--NV-N-VSTKKVFEKFDDNQH------VIKNNFKTIIKNLKEN----IVV---NIH 212 (258) T ss_pred E-----EECCCC-CCCEEEEEEC--CC-C-CCHHHHHHHHCCCCC------CCCCHHHHHHHHHHHH----HHH---CCC T ss_conf 8-----888778-7752999927--99-9-575999972262444------5631078888766777----763---370 Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHH Q ss_conf 9899987038995686578899999999997428961999977798179995589 Q gi|254781016|r 259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHK 313 (355) Q Consensus 259 l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~ 313 (355) |.|-.....-. |+-.+ ...++++.|..+..| .-|+.|+.+|..+ T Consensus 213 Ndle~~~~~~~-------P~i~~---~~~~l~~~~~~~~MS-GSGSt~F~i~~~~ 256 (258) T PRK05905 213 NDLQEPCFELY-------PNLLY---KYNELLNDGFYTILS-GAGSSFIVIKKIN 256 (258) T ss_pred CCHHHHHHHHC-------HHHHH---HHHHHHCCCCCEEEE-CCCCCEEEEEECC T ss_conf 17399999879-------79999---999986799838997-6371489999636 No 24 >COG1907 Predicted archaeal sugar kinases [General function prediction only] Probab=98.67 E-value=3.9e-05 Score=56.28 Aligned_cols=248 Identities=17% Similarity=0.189 Sum_probs=152.8 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 98434681278107999971788857998787256652068999999742167619439999850233211012322479 Q gi|254781016|r 50 NNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGF 129 (355) Q Consensus 50 n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgf 129 (355) -.++-++|+.-+-+-+++. + |.+-.+|... .+|+.+.++..-+.. ..++|+-...||.-.||+|---.. T Consensus 25 ~GgvG~aLe~P~l~i~~~~--s--~~~~~~ge~~------~~~~~~~a~~~le~~-~gv~I~I~~~~P~HvGLGS~TQla 93 (312) T COG1907 25 DGGVGLALEEPRLEIEAKP--S--DDIEVDGEDR------RERVEKAARLVLEVG-EGVKIEIRSDIPAHVGLGSTTQLA 93 (312) T ss_pred ECCEEEEEECCCEEEEEEC--C--CCCCCCCHHH------HHHHHHHHHHHHCCC-CCEEEEEEECCCHHCCCCHHHHHH T ss_conf 0440488507815999720--5--5411255066------899999999751416-752999975273220777377999 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHH---HHCCCCHHCCCCCCCC---CCCEEEEECCCCCC-CCEEEEEEEC Q ss_conf 999999999818899988999886521353034---3105620025789876---54413101566686-4215899972 Q gi|254781016|r 130 AALTLALFRIYSIPEKSESLSRVARLGSGSACR---SFYRGFCEWICGTDQN---GMDSFAVPFNNQWP-DLRIGLLKII 202 (355) Q Consensus 130 AALa~Al~~~~~~~~~~~~lS~lARlGSGSA~R---Si~GG~v~W~~g~~~~---~sds~a~~~~~~~~-dl~~~i~iv~ 202 (355) -|++.++.++++++++.+++....++|--||-= =-+|||+.=+ |.... +.-+ ++-+..++| |-+.+++|. T Consensus 94 La~a~ai~~i~gl~~~~~elA~~vgRG~tSgiGv~afe~GGFIVDG-Gh~~~f~ps~~s-P~I~R~dfPedW~~VlaIP- 170 (312) T COG1907 94 LAVASAILEIYGLELSIRELAFAVGRGGTSGIGVYAFEYGGFIVDG-GHSFGFLPSSAS-PLIFRLDFPEDWRFVLAIP- 170 (312) T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEEECCEEEEC-CCCCCCCCCCCC-CEEEEECCCCCEEEEEEEC- T ss_conf 9999999998658999899999973677564137998878899878-744676668999-6055322888659999944- Q ss_pred CCCCCCCCCHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HCCCCCEEEECHHH Q ss_conf 87667521056798876185689999730-5509999999980999999999999999899987--03899568657889 Q gi|254781016|r 203 DREKKIGSREAMEITRHHSPFFTQWTQQI-STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATM--IAASPPLLYWQKET 279 (355) Q Consensus 203 ~~~K~vsSt~gm~~~v~tSp~y~~r~~~~-~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~--~~s~P~~~Y~~~~t 279 (355) ..++-+.-+..-....+..|.-...+... ..-+-.|.-|+-++|++.|++-.- +++.+. .-...--.|+.+.- T Consensus 171 ~~~rg~~~~~E~~if~~~~p~p~~~~~~ls~~vLm~mmPavvE~Die~fg~~l~----~iQ~l~g~~f~~~e~~~~~~~V 246 (312) T COG1907 171 EVERGVSGRREVDIFKKYCPVPLEEVGELSHRVLMKMMPAVVERDIESFGEALN----EIQELGGKWFKKVEGGLQREDV 246 (312) T ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHHHHHHHHHHCEECCHHH T ss_conf 788432102788899756899979998999999998758988637999999999----9998876646564131022899 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHHHHHH Q ss_conf 9999999997428961999977798179995589899999 Q gi|254781016|r 280 IQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIEETIK 319 (355) Q Consensus 280 ~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~~~i~ 319 (355) .++| ..+++....++-+ -=||.|+=|+.+.....+. T Consensus 247 ~~iv---~~m~~~a~~agqS-SwGPtvY~i~d~~~~~~~~ 282 (312) T COG1907 247 KEIV---DEMVEAAYGAGQS-SWGPTVYGIVDSREAGSVV 282 (312) T ss_pred HHHH---HHHHHHCCCCCCC-CCCCEEEEECCCCCCCHHH T ss_conf 9999---9998723044325-6688789861653212479 No 25 >PRK03009 consensus Probab=98.64 E-value=1.1e-05 Score=60.16 Aligned_cols=254 Identities=16% Similarity=0.150 Sum_probs=130.3 Q ss_pred CCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCC--E Q ss_conf 84248811677670117578984346812781079999717888579987872566520689999997421676194--3 Q gi|254781016|r 30 SNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKV--Y 107 (355) Q Consensus 30 ~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~--~ 107 (355) .|..| +=-|||+.- .-.-.|+=..+ +++-+-+++..++....+.-+....+.+. .-|.+..+.+++..+. . T Consensus 11 INL~L-~V~~kr~DG--yH~l~Sl~~~i-~l~D~i~i~~~~~~~~~~~~~~~~i~~~~---Nlv~kA~~~l~~~~~~~~~ 83 (287) T PRK03009 11 LNLFL-HVTGRRPDG--YHLLQTVFQLL-DWGDTLHFTLRDDGKVARVTDVPGVPEES---DLVVRAARLLQAHTGTRLG 83 (287) T ss_pred EECCC-CCCCCCCCC--CCEEEEEEEEC-CCCCEEEEEECCCCCEEECCCCCCCCCCC---CHHHHHHHHHHHHHCCCCC T ss_conf 70250-248868999--87067899980-67869999988899479625777898866---5999999999985399885 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEEEEC Q ss_conf 99998502332110123224799999999998188999889998865213530343105620025789876544131015 Q gi|254781016|r 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187 (355) Q Consensus 108 ~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a~~~ 187 (355) +.|.-+-|+|.+|||+..+|-.||.-.+++++++++++.+++..+|+..----.-.++||- .|..|.++.-. .+.. T Consensus 84 ~~I~l~KnIPv~AGLGGGSSdAAa~L~~Ln~l~~l~ls~~~l~~ia~~lGADVPffl~~~~-a~~~G~Ge~l~---~l~~ 159 (287) T PRK03009 84 VDIEIDKRLPMGGGLGGGSSDAATTLLALNRLWGLDLPRAELQSLALKLGADVPFFVFGKN-AFAEGIGEALT---AVEL 159 (287) T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCC-EEEECCCCCCE---ECCC T ss_conf 4999980687656778775379999999999707999999999998763998230322776-79985884640---7478 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 66686421589997287667521056798876185689999730550999999998099999999999999989998703 Q gi|254781016|r 188 NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIA 267 (355) Q Consensus 188 ~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~ 267 (355) ++.. +++|.. +...||.-+=.... ..+ ......+.+.. +....|........ .|.|-..... T Consensus 160 ----~~~~--~llv~P--~~~iST~~vy~~~~-----~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~---~NdLe~~a~~ 221 (287) T PRK03009 160 ----PPRW--FLVVTP--RVHVPTAEIFSDES-----LTR-DTKPITIADFL-AQQTSDAGWPDSFG---RNDLQPVVTS 221 (287) T ss_pred ----CCCE--EEEECC--CCCCCHHHHHHCCH-----HCC-CCCCCCHHHHH-HHHCCCHHHHHHHC---CCCCHHHHHH T ss_conf ----9747--999859--99846799974502-----025-67766687887-52332455678754---7875899987 Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHH Q ss_conf 89956865788999999999974289619999777981799955-8989999999763 Q gi|254781016|r 268 ASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPE 324 (355) Q Consensus 268 s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~ 324 (355) - .|+-.++++. ++..+ .+-.| .-||.|+-||. +++++++.+.|+. T Consensus 222 ~-------~PeI~~i~~~---l~~~~-~a~MS-GSGSt~Fglf~~~~~A~~a~~~l~~ 267 (287) T PRK03009 222 K-------YAEVARAVEW---LYNLT-PARMT-GSGACVFAAFKSKAEAEAAQAKLPA 267 (287) T ss_pred H-------CHHHHHHHHH---HHCCC-CEEEE-CCCCEEEEEECCHHHHHHHHHHCCC T ss_conf 4-------8899999999---86789-71877-7150288998999999999986887 No 26 >COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Probab=98.61 E-value=6.6e-05 Score=54.70 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=144.3 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC--------CC--CCHHHHCCCCHHCCCCCC Q ss_conf 39999850233211012322479999999999818899988999886521--------35--303431056200257898 Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG--------SG--SACRSFYRGFCEWICGTD 176 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--------SG--SA~RSi~GG~v~W~~g~~ 176 (355) .+.|.+.-..|..+||+||++...||..|+...-+..++..+|.++|-.. -| ----..||||-...-+. T Consensus 89 ~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~- 167 (333) T COG2605 89 PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRG- 167 (333) T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECC- T ss_conf 4699984378999987734799999999999985787898999999999889985454666237899847921799748- Q ss_pred CCCC-CEEEEECCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 7654-4131015666-8642158999728766752105679887618568----99997305509999999980999999 Q gi|254781016|r 177 QNGM-DSFAVPFNNQ-WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFF----TQWTQQISTDLAHIKQAIIDQDFIKL 250 (355) Q Consensus 177 ~~~s-ds~a~~~~~~-~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y----~~r~~~~~~~~~~~~~ai~~~Df~~l 250 (355) ++. ..-++.+..+ -.+|+.-++++-++.+..||-.-+++..+ .--- .+-..+..+...+|.+++-..|+..| T Consensus 168 -~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~-~~~~~~~~~e~~~~mk~~A~~~~~al~~nd~~~f 245 (333) T COG2605 168 -NGEVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRN-VVDGDEETLEALHEMKALAYEMKDALVRNDIPEF 245 (333) T ss_pred -CCCEEEEECCCCHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf -98389800334466899987406998816402255889999987-6315188999999999999999999986335779 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH-HHCCCEEEEEECCCCE--EEEEECHHHHHHHHHHHHHCCC Q ss_conf 999999999899987038995686578899999999997-4289619999777981--7999558989999999763210 Q gi|254781016|r 251 GEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDA-RQQSIPIYFTLDAGPN--LKLLFTHKIEETIKQFFPEITI 327 (355) Q Consensus 251 ~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~-R~~g~~v~fT~DAGPN--v~il~~~~~~~~i~~~l~~i~~ 327 (355) +++.-.... +--. +++ --|-..|+.++++ ++.|--..=++.||.. +.++|++.....+.+.|...+. T Consensus 246 ~~~l~~gW~-~KK~-ls~--------~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~~~~ 315 (333) T COG2605 246 GQILDRGWE-AKKK-LSS--------RISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARALEKEQG 315 (333) T ss_pred HHHHHHHHH-HHHH-HCC--------CCCCHHHHHHHHHHHHCCCHHCEEECCCCCCEEEEEECCCCHHHHHHHHHHHCC T ss_conf 999976777-6455-335--------767477899999998667322223026886279999685424899999998449 Q ss_pred C-----CCCCCCCCCCC Q ss_conf 0-----36888751200 Q gi|254781016|r 328 I-----DPLDSPDLWST 339 (355) Q Consensus 328 ~-----~~~~~~~~~~~ 339 (355) . +...|..+|.. T Consensus 316 ~~~~~~Fd~~Gsr~i~i 332 (333) T COG2605 316 FVVDTSFDKEGSRIIFI 332 (333) T ss_pred CEEEEEECCCCEEEEEC T ss_conf 73787764787079822 No 27 >COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Probab=98.61 E-value=0.00011 Score=53.27 Aligned_cols=281 Identities=19% Similarity=0.222 Sum_probs=154.2 Q ss_pred CCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEE-ECCEECCC-----CCHHHHHH Q ss_conf 7763789748842488116776701175789843468127810799997178885799-87872566-----52068999 Q gi|254781016|r 20 INEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCII-LNGQKISS-----QSSFFKKT 93 (355) Q Consensus 20 ~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~-lnG~~~~~-----~~~~~~ri 93 (355) .....+++||--+-||-=+=-++.-..+|.. + +..|...++..++...+++ .|...... ..-...++ T Consensus 20 ~~~~~~~~aPGRvNLIGEHtDYn~G~VlP~A------i-n~~t~v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~~~~~ 92 (390) T COG0153 20 VEPTVTAFAPGRVNLIGEHTDYNGGFVLPCA------I-NYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLLDIAKEKI 92 (390) T ss_pred CCCCEEECCCCEEEEECCCEECCCCEEEEEE------E-ECCEEEEEEECCCCEEEEEECCCCCCCCEEECCHHHCCCCC T ss_conf 3764576178558860122212686678889------6-05428999973685599996787633424304433144531 Q ss_pred HHHHHHHHH------HCCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC----CCC Q ss_conf 999742167------6194---399998502332110123224799999999998188999889998865213----530 Q gi|254781016|r 94 TQFCDLFRQ------FSKV---YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGS----GSA 160 (355) Q Consensus 94 ~~~l~~~r~------~~~~---~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGS----GSA 160 (355) ..+.++++. ..+. .+.|.-.-|+|++|||+||||=-.|+++++.++++++++..++..++..-- |=- T Consensus 93 ~~W~nYvkgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn 172 (390) T COG0153 93 DDWANYVKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVN 172 (390) T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 10332478999999865877677059996678888886726899999999999973899988899999999875134776 Q ss_pred ------HHHHCC---CCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHH----H------HHH- Q ss_conf ------343105---62002578987654413101566686421589997287667521056798----8------761- Q gi|254781016|r 161 ------CRSFYR---GFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEI----T------RHH- 220 (355) Q Consensus 161 ------~RSi~G---G~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~----~------v~t- 220 (355) +-|.+| -...-.. ......++| +|-..+.++|++...|.-....-... + ... T Consensus 173 ~G~mDQ~~s~~G~~~~al~ld~----~~l~~~~~~----~p~~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~ 244 (390) T COG0153 173 CGIMDQLASAFGKKDHALLLDC----RTLEYEPVP----FPVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVS 244 (390) T ss_pred CCHHHHHHHHHCCCCCEEEEEC----CCCCEEEEC----CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 7508899998687784899973----666268730----47664599996379766542347899999999999999875 Q ss_pred ---------------------CHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC Q ss_conf ---------------------85689999730---550999999998099999999999999989998703899568657 Q gi|254781016|r 221 ---------------------SPFFTQWTQQI---STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQ 276 (355) Q Consensus 221 ---------------------Sp~y~~r~~~~---~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~ 276 (355) .|-...|+..+ ..|..+..+|++++||.+||+++..+-.+|--.+--|.| T Consensus 245 ~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~p------ 318 (390) T COG0153 245 IKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCP------ 318 (390) T ss_pred HHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCH------ T ss_conf 50354337999996452414466888999999867778999999987188999999999989988743566566------ Q ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCC--EEEEEECHHHHHHHHHHHHHC Q ss_conf 889999999999742896-1999977798--179995589899999997632 Q gi|254781016|r 277 KETIQGMERVWDARQQSI-PIYFTLDAGP--NLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 277 ~~t~~ii~~v~~~R~~g~-~v~fT~DAGP--Nv~il~~~~~~~~i~~~l~~i 325 (355) +.=.+.+..+.. .|. .+=-| .||= -+.-|.++++.+.+++.+.+- T Consensus 319 -ElD~lve~a~~~--~G~~GaRmT-GaGfGGc~IaLv~~~~v~~~~e~v~~~ 366 (390) T COG0153 319 -ELDTLVEIALAA--GGAYGARMT-GAGFGGCVIALVPNDDVEAVAEAVAEE 366 (390) T ss_pred -HHHHHHHHHHHC--CCCCCCEEC-CCCCCCEEEEEECHHHHHHHHHHHHHH T ss_conf -289999999872--786501203-788785599993220279999999876 No 28 >PRK04943 consensus Probab=98.59 E-value=2.3e-05 Score=57.84 Aligned_cols=253 Identities=13% Similarity=0.052 Sum_probs=138.2 Q ss_pred CCEEEECCCCEEEE-ECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE--ECCCCCHHHHHHHHHHH Q ss_conf 63789748842488-1167767011757898434681278107999971788857998787--25665206899999974 Q gi|254781016|r 22 EKSSAFLPSNIALC-KYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ--KISSQSSFFKKTTQFCD 98 (355) Q Consensus 22 ~~~ta~ap~NIALI-KYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~--~~~~~~~~~~ri~~~l~ 98 (355) ......||.-|=|- +=-|||+.- .=--.|+=..+ +++-+-+++ +.+.+.+.+.+. ..+.+. .-|.+.++ T Consensus 4 ~~~~~~aPAKINL~L~V~~kr~DG--YH~i~S~~~~i-dl~D~l~i~--~~~~~~i~~~~~~~~i~~~~---Nli~kA~~ 75 (288) T PRK04943 4 GTTRWPSPAKLNLFLYINGRTENG--YHELQTLFQFL-DHGDELTIT--ANNSGNITLSPAIEGVPLED---NLIWKAAT 75 (288) T ss_pred CCEEEECCEEEECCCCCCCCCCCC--CCEEEEEEEEE-CCCEEEEEE--ECCCCCEEEECCCCCCCCCC---CHHHHHHH T ss_conf 874871311682340238879999--87157899981-675099999--98999889817867898767---49999999 Q ss_pred HHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCC Q ss_conf 21676194--3999985023321101232247999999999981889998899988652135303431056200257898 Q gi|254781016|r 99 LFRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTD 176 (355) Q Consensus 99 ~~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~ 176 (355) .+++..+. .+.|.-+-|+|.+|||+.-+|-.||+..+++++++++++.+++..+|+...---.-.++|+-+ |..|.+ T Consensus 76 ~l~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l~~l~ls~~~l~~ia~~lGADVPffl~~~~a-~~~G~G 154 (288) T PRK04943 76 ALQNAAQCSLGAHIELHKILPMGGGIGGGSSNAATTLVALNYLWQTGLSDDELAEIGLALGADVPVFVRGFAA-FAEGVG 154 (288) T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCE-EEECCC T ss_conf 9999769998808999971787578887620699999999998479999899999887439985768617768-998688 Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 76544131015666864215899972876675210567988761856899997305509999999980999999999999 Q gi|254781016|r 177 QNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 177 ~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) +.-. .+.. ++.. +++|.. +...||..+=.. ++..-.....++..+......+||+... T Consensus 155 E~l~---~~~~----~~~~--~lLv~P--~~~iST~~vf~~------~~~~~~~~~~~~~~~~~~~~~NDLE~~~----- 212 (288) T PRK04943 155 EKLS---PATP----EEKW--YLVVRP--NVSIATVDIFTH------PDLTRNTPKRDLETLLNTPYVNDCEKIV----- 212 (288) T ss_pred CEEE---ECCC----CCCE--EEEECC--CCCCCCHHHHCC------CHHCCCCCCCCHHHHHHCHHCCCCHHHH----- T ss_conf 5742---6677----7767--999879--999727788059------3001376521799987360047857999----- Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHHCC Q ss_conf 9998999870389956865788999999999974289619999777981799955-898999999976321 Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPEIT 326 (355) Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i~ 326 (355) ..- .|+-.++++. +.+.+ .+-.| .-||.|+-+|. +++++++.+.|++-- T Consensus 213 ---------~~~-------~PeI~~~~~~---l~~~~-~~~MS-GSGstvFglf~s~~~A~~~~~~l~~~~ 262 (288) T PRK04943 213 ---------RML-------YPEVDKQLSW---LLQYA-PSRLT-GTGSCVFAEFSSRSEAEAILAQLSDNV 262 (288) T ss_pred ---------HHH-------CHHHHHHHHH---HHCCC-CCEEE-CHHHEEEEEECCHHHHHHHHHHCCCCC T ss_conf ---------986-------8899999999---85659-87132-640558899899999999998689767 No 29 >PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Probab=98.49 E-value=1.3e-05 Score=59.65 Aligned_cols=248 Identities=18% Similarity=0.163 Sum_probs=134.1 Q ss_pred EEECCC--CEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEEC--CCCCHHHHHHHHHHHHH Q ss_conf 897488--42488116776701175789843468127810799997178885799878725--66520689999997421 Q gi|254781016|r 25 SAFLPS--NIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKI--SSQSSFFKKTTQFCDLF 100 (355) Q Consensus 25 ta~ap~--NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~--~~~~~~~~ri~~~l~~~ 100 (355) |+.||. |+.| +--|||+.- .-.-.|+=... +++-+-+++. .++..+.+.|... +.++ .-|.+.++.+ T Consensus 4 ~~~aPAKINL~L-~V~~kr~DG--yH~i~Sl~~~i-dl~D~i~i~~--~~~~~i~~~~~~~~i~~~~---Nlv~ka~~~l 74 (279) T PRK00343 4 DWPAPAKLNLFL-HITGRRADG--YHELQTLFQFL-DYGDTLHFEP--RDDGQIRLLTEIPGVPEED---NLIVRAARLL 74 (279) T ss_pred CCCCCEEEEECC-CCCCCCCCC--CCEEEEEEEEC-CCCCEEEEEE--CCCCCEEEECCCCCCCCCC---CHHHHHHHHH T ss_conf 636500273032-238708999--86257899982-7883999999--8899689946877798647---5999999999 Q ss_pred HHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCC Q ss_conf 676194--399998502332110123224799999999998188999889998865213530343105620025789876 Q gi|254781016|r 101 RQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQN 178 (355) Q Consensus 101 r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~ 178 (355) ++..+. .+.|.-+-|.|++|||+..+|-.||+-.+++++++++++.+++..+|+.. ||=.+-+..|-..|..|.++. T Consensus 75 ~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l~~l~ls~~~l~~ia~~l-GaDVPffl~~~~a~~~G~Ge~ 153 (279) T PRK00343 75 QKATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAALGLKL-GADVPVFVRGHAAFAEGVGEK 153 (279) T ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCCEEEEECCCCEEEEECCCE T ss_conf 9986999974999996587635678887128999999999746678999999998751-897777860876899806868 Q ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 54413101566686421589997287667521056798876185689999730550999999998099999999999999 Q gi|254781016|r 179 GMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA 258 (355) Q Consensus 179 ~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~da 258 (355) - ..+.. ++.. +++|... -..||.-+=. .+.. .| ......+..+......+|| T Consensus 154 l---~~~~~----~~~~--~llv~P~--~~vST~~vf~----~~~l-~~-~~~~~~~~~~~~~~~~NDL----------- 205 (279) T PRK00343 154 L---TPVEL----PEKW--YLVVKPG--VHVSTAEIFS----DPEL-TR-DTPKRTIADFLAGPGRNDC----------- 205 (279) T ss_pred E---EECCC----CCCE--EEEECCC--CCCCHHHHHH----CCCC-CC-CCCCCCHHHHHHCHHCCCH----------- T ss_conf 7---77567----8747--9998799--9956199983----8245-54-7730069999843121858----------- Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHHC Q ss_conf 98999870389956865788999999999974289619999777981799955-89899999997632 Q gi|254781016|r 259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPEI 325 (355) Q Consensus 259 l~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i 325 (355) ......-. |+=-+++ ..+.+.| .+.-| .-||.|+-+|. +++++.+.+.|++- T Consensus 206 ---e~~a~~~~-------PeI~~~~---~~L~~~~-~~~MS-GSGSt~Fglf~~~~~A~~a~~~l~~~ 258 (279) T PRK00343 206 ---EPVVRKRY-------PEVAQAL---SWLLEYA-PARMT-GTGACVFAEFDTEAEAEAVLAQLPEG 258 (279) T ss_pred ---HHHHHHHC-------HHHHHHH---HHHHHCC-CCEEE-CCCCEEEEEECCHHHHHHHHHHCCCC T ss_conf ---99998869-------8999999---9986028-87465-42225889979999999999864744 No 30 >PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Probab=98.46 E-value=3.5e-05 Score=56.60 Aligned_cols=235 Identities=15% Similarity=0.148 Sum_probs=127.6 Q ss_pred CCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECC-EECCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 48842488116776701175789843468127810799997178885799878-72566520689999997421676194 Q gi|254781016|r 28 LPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNG-QKISSQSSFFKKTTQFCDLFRQFSKV 106 (355) Q Consensus 28 ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG-~~~~~~~~~~~ri~~~l~~~r~~~~~ 106 (355) |-.|+.| +=-|||+.- .-.-.|+=..+| ++-+-+++ ...++.+.+.+ ...+..+ .-|.+.++.+++..+. T Consensus 7 AKINL~L-~V~~kr~DG--YH~l~Sl~~~id-l~D~i~i~--~~~~~~~~~~~~~~~~~~~---Nli~kA~~~l~~~~~~ 77 (288) T PRK00650 7 AKLNLFL-QLLGKREDG--FHEIVTRYQAID-FGDQLSLS--ISSRDSLQVINLCELETPQ---NSIWKSVALFRDYTGI 77 (288) T ss_pred EEEECCC-CCCCCCCCC--CCEEEEEEEEEC-CCCEEEEE--ECCCCCEEEECCCCCCCCH---HHHHHHHHHHHHHHCC T ss_conf 1073250-458879999--881579999967-89899999--8899968983898789945---6999999999997499 Q ss_pred --EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEE Q ss_conf --399998502332110123224799999999998188999889998865213530343105620025789876544131 Q gi|254781016|r 107 --YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFA 184 (355) Q Consensus 107 --~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a 184 (355) .+.|+-+-|+|.+|||+..+|-.||...+++++++++++.+++..+|+...--..-.++||.+. ..|.++. - T Consensus 78 ~~~~~I~l~KnIPvgAGLGGGSSnAAavL~~Ln~l~~l~l~~~~L~~ia~~lGADVPffl~~~~a~-~~G~GE~---i-- 151 (288) T PRK00650 78 TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQHFQTGLSDEELRSLAEKIGMDTPFFFSSGSAL-GVGRGEK---I-- 151 (288) T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECCCCEE-EEECCCE---E-- T ss_conf 987379999579765567610378999999999985589899999999987299814075387589-9937967---7-- Q ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 01566686421589997287667521056798876185689999730550999999998099999999999999989998 Q gi|254781016|r 185 VPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHAT 264 (355) Q Consensus 185 ~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~ 264 (355) .++... +++..+++. .. ..++..+. =..++-+.+ . ..++ +.. .++|| -.. T Consensus 152 ~~l~~~-~~~~~vLv~--p~-~~vsT~~v-f~~~~~~~~-~-----~~~~---l~~--~~NDL--------------E~~ 201 (288) T PRK00650 152 LALEES-VSDRYVLYF--SD-QGVLTSDA-FAYVQPSDC-S-----SRKN---LEY--TQNDL--------------EKP 201 (288) T ss_pred EECCCC-CCCEEEEEC--CC-CCCCCHHH-HHHCCCCCC-C-----HHHH---HHH--CCCCC--------------HHH T ss_conf 788767-765199991--99-89776698-750491006-6-----3666---654--58978--------------899 Q ss_pred HHCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEEEEEECHHHH Q ss_conf 703899568657889999999999742896-199997779817999558989 Q gi|254781016|r 265 MIAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNLKLLFTHKIE 315 (355) Q Consensus 265 ~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv~il~~~~~~ 315 (355) .+.- .|+--++.+++.++.+.+. .+--| ..|+.|+.+|+++.. T Consensus 202 a~~~-------~P~i~~ik~~L~~l~a~~~~~~rMS-GSGstvFa~F~~~~e 245 (288) T PRK00650 202 VFRL-------RLDLKEKKHWLESLWSPFPVHVGLT-GSGATLFVRYPRILE 245 (288) T ss_pred HHHH-------CHHHHHHHHHHHHCCCCCCCEEEEE-CCCCEEEEEECCCCC T ss_conf 9985-------9799999999996469877658887-313049999088110 No 31 >PRK04648 consensus Probab=98.44 E-value=1.1e-05 Score=60.25 Aligned_cols=242 Identities=14% Similarity=0.162 Sum_probs=129.7 Q ss_pred ECC--CCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC---CCCHHHHHHHHHHHHHH Q ss_conf 748--8424881167767011757898434681278107999971788857998787256---65206899999974216 Q gi|254781016|r 27 FLP--SNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS---SQSSFFKKTTQFCDLFR 101 (355) Q Consensus 27 ~ap--~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~---~~~~~~~ri~~~l~~~r 101 (355) -|| .|+.| +--|||+.- .-.-.|+=..+| ++-+-+++. ....++...|...+ .++ .-|.+.++.++ T Consensus 18 ~APAKINL~L-~V~gkr~DG--YH~l~Sl~~~id-l~D~l~i~~--~~~~~~~~~~~~~~~i~~~~---Nlv~ka~~~l~ 88 (295) T PRK04648 18 PAPAKLNLFL-QITGRRADG--YHLLQTVFRLLD-WGDTIHLRV--RSDGQIHRIGESLPGVAEDD---DLVVRAARLLQ 88 (295) T ss_pred CCCCEEECCC-CCCCCCCCC--CCEEEEEEEECC-CCEEEEEEE--CCCCCEEEECCCCCCCCCCC---HHHHHHHHHHH T ss_conf 5621370251-328879999--872568999837-880999998--89994799368888899977---49999999999 Q ss_pred HHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCC Q ss_conf 76194--3999985023321101232247999999999981889998899988652135303431056200257898765 Q gi|254781016|r 102 QFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNG 179 (355) Q Consensus 102 ~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~ 179 (355) +..+. .+.|.-+-|+|.+|||+.-+|-.||+-.++++.++++++.+++..+|+...--..-.++|+- .|..|.++.- T Consensus 89 ~~~~~~~~~~I~l~K~IPvgAGLGGGSSnAAa~L~~Ln~~~~l~ls~~~L~~ia~~lGaDVPffl~~~~-a~~~G~GE~l 167 (295) T PRK04648 89 SAAGTALGAEIRVDKRIPAGGGFGGGSSDAATVLVALNALWGLGLDVDTLAELGLRLGADVPVFVRGHN-AWAEGVGEQL 167 (295) T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCC-EEEEECCCEE T ss_conf 965999874999980686675677654689999999999858999989999999964899315874776-8999678363 Q ss_pred CCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHH---HHHHHHHHHHHH-HHHCCHHHHHHHHH Q ss_conf 44131015666864215899972876675210567988761856899997---305509999999-98099999999999 Q gi|254781016|r 180 MDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQ---QISTDLAHIKQA-IIDQDFIKLGEVAE 255 (355) Q Consensus 180 sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~---~~~~~~~~~~~a-i~~~Df~~l~~i~e 255 (355) .++ ..|+..+ ++|..+. -.||.-+= +.+-. ..+..+.+.... +..+ T Consensus 168 -----~~~--~~~~~~~--lLv~P~~--~vST~~vy---------~~~~~~~~~~~~~~~~~~~~~~~~N---------- 217 (295) T PRK04648 168 -----TPI--SLPEAAY--LLVDPGV--HVPTPVLF---------RSQELTRDAAPAKIADFASGSLLDN---------- 217 (295) T ss_pred -----EEC--CCCCCEE--EEECCCC--CCCHHHHH---------HCCCCCCCCCCCCHHHHHHCCHHHC---------- T ss_conf -----586--7788579--9988999--96659997---------3834456666455677762843118---------- Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHH-HHHHHHHHHHH Q ss_conf 9999899987038995686578899999999997428961999977798179995589-89999999763 Q gi|254781016|r 256 KNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHK-IEETIKQFFPE 324 (355) Q Consensus 256 ~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~-~~~~i~~~l~~ 324 (355) .+-.+.+... |+-.+++ ..+++-|. +--| ..||.|+-+|..+ +++++.+.|+. T Consensus 218 ----dlE~~~~~~~-------P~I~~i~---~~L~~~g~-a~MS-GSGSt~FglF~~~~~A~~a~~~l~~ 271 (295) T PRK04648 218 ----AFEPVLRRRE-------PAVEAVF---QALSRVGT-PRLT-GSGSGCFVEFATRAAAEQALAQLPG 271 (295) T ss_pred ----HHHHHHHHCC-------HHHHHHH---HHHHCCCC-CCEE-EECCCEEEEECCHHHHHHHHHHCCC T ss_conf ----1689998628-------8999999---99860598-6579-5352138998999999999996345 No 32 >COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Probab=98.44 E-value=4.2e-05 Score=56.04 Aligned_cols=261 Identities=18% Similarity=0.198 Sum_probs=142.5 Q ss_pred CEEEECC--CCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECC-EECCCCCHHHHHHHHHHHH Q ss_conf 3789748--842488116776701175789843468127810799997178885799878-7256652068999999742 Q gi|254781016|r 23 KSSAFLP--SNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNG-QKISSQSSFFKKTTQFCDL 99 (355) Q Consensus 23 ~~ta~ap--~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG-~~~~~~~~~~~ri~~~l~~ 99 (355) +.++.|| .|+.| +--|||+.-+ -.--||=-++| ++-+-+++..+...+.+.-+. ..++..+ .-+.+..+. T Consensus 3 ~~~~~apAKiNL~L-~V~gkr~DGY--Hel~sl~~~id-~~D~l~i~~~~~~~~~~~~~~~~~lp~~~---NLv~rAa~l 75 (289) T COG1947 3 STKFPAPAKINLFL-HVTGKRADGY--HELETLFQFID-LGDELTIRPRDDDGFIVLGTFADGLPTDE---NLVYRAAEL 75 (289) T ss_pred CEEEECCCEEEEEE-EECCCCCCCC--EEEEEEEEEEC-CCCEEEEEECCCCCCEEECCCCCCCCCCC---HHHHHHHHH T ss_conf 36872154488888-8535589984--34589999941-48789999877887269667777887743---199999999 Q ss_pred HHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCC Q ss_conf 1676194--39999850233211012322479999999999818899988999886521353034310562002578987 Q gi|254781016|r 100 FRQFSKV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQ 177 (355) Q Consensus 100 ~r~~~~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~ 177 (355) +++..+. .+.|.-+-+.|.++|||--+|-.||.-+++++++++.++.++|..|+-+-..-..-.++||-+. -.|.++ T Consensus 76 l~~~~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LGaDVPffl~g~tA~-a~G~GE 154 (289) T COG1947 76 LRKRTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLGADVPFFLSGGTAF-AEGRGE 154 (289) T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCEE-EEECCC T ss_conf 9998689998279998368655767664578999999999986799999999999998689867143188569-887363 Q ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCCCCCC-CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 65441310156668642158999728766752-10567988761856899997305509999999980999999999999 Q gi|254781016|r 178 NGMDSFAVPFNNQWPDLRIGLLKIIDREKKIG-SREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 178 ~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vs-St~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) . . .++.+ .+...++++ .. .++ ||..+=+ .+... .....-..+..++..+++..+.+ . T Consensus 155 ~---l--~~~~~-~~~~~~vl~--~P---~v~vsT~~vy~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~ 212 (289) T COG1947 155 K---L--EPLED-PPEKWYVLA--KP---GVGVSTKEVYK----DPELT----RNTPKSEPLIAALSLENLKQIAP---F 212 (289) T ss_pred E---E--EECCC-CCCCEEEEE--EC---CCCCCHHHHHC----CCCCC----CCCCCCHHHHHHHHHHHHHHHHH---H T ss_conf 5---1--47777-887529999--58---98998799970----86756----46677224558786552776410---2 Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCC-CEEEEEECCCCEEEEEECHH-HHHHHHHHHHH Q ss_conf 9998999870389956865788999999999974289-61999977798179995589-89999999763 Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGPNLKLLFTHK-IEETIKQFFPE 324 (355) Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g-~~v~fT~DAGPNv~il~~~~-~~~~i~~~l~~ 324 (355) .-|.|.+....-.| +- -+....+++.| ..+..| ..||.|+-+|+.+ .++.+.+.+++ T Consensus 213 ~~NdLe~~~~~~~p-------~v---~~~~~~l~~~ga~~~~mS-GSGstvF~l~~~~~~a~~~~~~l~~ 271 (289) T COG1947 213 LINDLEKVALRLYP-------EV---KEALSELLEYGALPARMS-GSGSTVFALFDTEKEAQRVAEQLPK 271 (289) T ss_pred CCCCHHHHHHHHCH-------HH---HHHHHHHHHCCCCCCEEE-CCCCCEEEEECCHHHHHHHHHHHHC T ss_conf 03645788988586-------89---999999764135443682-4787289993876889999987430 No 33 >PRK05101 galactokinase; Provisional Probab=98.44 E-value=0.00028 Score=50.31 Aligned_cols=310 Identities=14% Similarity=0.144 Sum_probs=154.3 Q ss_pred HHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCC-EEEEEEE-C-C--CCCCEEEECCEECC Q ss_conf 8874034678776378974884248811677670117578984346812781-0799997-1-7--88857998787256 Q gi|254781016|r 10 HRYIGECNPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLG-TITHITV-I-D--SDADCIILNGQKIS 84 (355) Q Consensus 10 ~~~~~~~~~~~~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~-T~T~v~~-~-~--~~~d~~~lnG~~~~ 84 (355) .-|...-+..+ ...++||--|-||==+=-++.-..||.-=....++.... .+.++.+ + + ...+.|-++..... T Consensus 9 ~~F~~~fG~~P--~~~~~APGRVnliGEHtDY~gG~Vlp~AI~~~~~ia~~~~~d~~~~v~s~~~~~~~~~~~l~~~~~~ 86 (382) T PRK05101 9 SLFAEQFGYPP--THTIQAPGRVNLIGEHTDYNDGFVLPCAINYQTVISCAKRDDRIVRVIAADYDNQQDEFSLDAPIVP 86 (382) T ss_pred HHHHHHHCCCC--CEEEECCCCCCCCCHHHHCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCC T ss_conf 99999868998--5899776740332032342898578688112579999988998599998888985258856876677 Q ss_pred C-CCHHHHHHHHHHHHHHHHC-C-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC---- Q ss_conf 6-5206899999974216761-9-4399998502332110123224799999999998188999889998865213---- Q gi|254781016|r 85 S-QSSFFKKTTQFCDLFRQFS-K-VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGS---- 157 (355) Q Consensus 85 ~-~~~~~~ri~~~l~~~r~~~-~-~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGS---- 157 (355) . ...-..-+.-.+..+++.. . ..+.+.-..++|.++||.||||--.|++.++..+++++++..++..+++..- T Consensus 87 ~~~~~W~~Yv~Gv~~~l~~~g~~~~G~d~~I~s~IP~GaGLSSSAAl~va~~~al~~l~~~~~~~~ela~l~~~aE~~~~ 166 (382) T PRK05101 87 HENYQWANYVRGVVKHLQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFV 166 (382) T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC T ss_conf 87766799999999999973899887389996788887775417899999999999973899899999999999998401 Q ss_pred CCCH------HHHCCC---CHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCH-------HHHHHHHH- Q ss_conf 5303------431056---200257898765441310156668642158999728766752105-------67988761- Q gi|254781016|r 158 GSAC------RSFYRG---FCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSRE-------AMEITRHH- 220 (355) Q Consensus 158 GSA~------RSi~GG---~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~-------gm~~~v~t- 220 (355) |..| -|++|. ...-... ..+...++++ .++ .+++++...|+-..+. .++...+. T Consensus 167 G~~~GiMDQ~as~~g~~~~al~id~~----~l~~~~v~lp---~~~--~~vi~dS~v~~~l~~~~Yn~R~~ec~~aa~~l 237 (382) T PRK05101 167 GCNCGIMDQLISALGKKDHALLIDCR----SLETKAVSMP---EGV--AVVIINSNVKRGLVDSEYNTRREQCETAARFF 237 (382) T ss_pred CCCCCCHHHHHHHHCCCCEEEECCCC----CCCEEEEECC---CCC--EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 78887167889985267828850367----8843665469---996--79995388654345450578999999999996 Q ss_pred --------------------CHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH Q ss_conf --------------------85689999730---5509999999980999999999999999899987038995686578 Q gi|254781016|r 221 --------------------SPFFTQWTQQI---STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQK 277 (355) Q Consensus 221 --------------------Sp~y~~r~~~~---~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~ 277 (355) .+....|...+ ..|..+..+|++++|++.||+++-.+-..|--.+--|. | T Consensus 238 ~~~~Lrd~~~~~l~~~~~~l~~~~~~Ra~Hvi~E~~Rv~~a~~aL~~~d~~~lG~Lm~~SH~Slr~~yevS~-------~ 310 (382) T PRK05101 238 GVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAQGDLKRMGELMAESHASMRDDFEITV-------P 310 (382) T ss_pred CHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC-------H T ss_conf 924133289999998771089999999999999999999999998628999999999862798998770798-------8 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCC--CEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 89999999999742896199997779--81799955898999999976321003688875120 Q gi|254781016|r 278 ETIQGMERVWDARQQSIPIYFTLDAG--PNLKLLFTHKIEETIKQFFPEITIIDPLDSPDLWS 338 (355) Q Consensus 278 ~t~~ii~~v~~~R~~g~~v~fT~DAG--PNv~il~~~~~~~~i~~~l~~i~~~~~~~~~~~~~ 338 (355) +.-.+++..++.......+=.| .|| =-+..|++++.++.+.+.+.+...-.....|..+. T Consensus 311 elD~lv~~a~~~~g~~gGARmt-G~GfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~g~~~~~~~ 372 (382) T PRK05101 311 QIDTLVEIVKAVIGDQGGVRMT-GGGFGGCIVALVPEELVEAVRQAVAEQYEAKTGLKETFYV 372 (382) T ss_pred HHHHHHHHHHHHCCCCCEEEEE-CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 9999999999761877546896-3676002899974778999999999999996499987899 No 34 >TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase; InterPro: IPR005917 Protein kinases are a group of enzymes that possess a catalytic subunit which transfers the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. The enzymes fall into two broad classes, characterised with respect to substrate specificity: serine/threonine specific and tyrosine specific . Protein kinase function has been evolutionarily conserved from Escherichia coli to Homo sapiens. Protein kinases play a role in a mulititude of cellular processes, including division, proliferation, apoptosis, and differentiation . Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved , leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases . Phosphomevalonate kinase (2.7.4.2 from EC)catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. This pathway starts with three molecules of acetyl-CoA, which, in a series of six different enzyme reactions, are converted to isopentanyl pyrophosphate (IPP), the basic C5 isoprene unit and a common intermediate for a number of pathways including isoprenoid and cholesterol biosynthesis. There are two unrelated types of PMK. The first type belongs to the GHMP kinase and includes a eukaryotic group which is typified by Saccharomyces cerevisiae ERG8 and a bacterial group typified by by Streptococcus pneumoniae PMK (MvaK2) . The second type includes animal PMKs, typified by human PMK . PMKs of the first type are present in eubacteria, fungi, and plants, while the second type is found only in animals, indicative of a nonorthologous gene displacement early in animal evolution . PMKs of the GHMP kinase type are closely related to mevalonate kinases. The two types of PMK have different consensus ATP-binding motifs: a protein kinase motif in the ERG8 orthologs versus a P-loop or Walker A motif in the animal orthologs. The fact that ERG8 orthologs are found in pathogenic eubacteria and fungi but not in humans makes them attractive targets for the development of antibacterial and/or antifungal drugs . This group of enzymes belongs to the GHMP kinase domain superfamily. GHMP kinases are a unique class of ATP-dependent enzymes (the abbreviation of which refers to the original members: galactokinase, homoserine kinase, mevalonate kinase, and phosphomevalonate kinase) . Enzymes belonging to this superfamily contain three well-conserved motifs, the second of which has the typical sequence Pro-X-X-X-Gly-Leu-X-Ser-Ser-Ala and is involved in ATP binding . The phosphate binding loop in GHMP kinases is distinct from the classical P-loops found in many ATP/GTP binding proteins. The bound ADP molecule adopts a rare syn conformation and is in the opposite orientation from those bound to the P-loop-containing proteins . GHMP kinases display a distinctly bilobal appearance with their N-terminal subdomains dominated by a mixed beta-sheet flanked on one side by alpha-helices and their C-terminal subdomains containing a four stranded anti-parallel beta-sheet , , , .. Probab=98.42 E-value=5e-05 Score=55.53 Aligned_cols=274 Identities=15% Similarity=0.153 Sum_probs=167.2 Q ss_pred CCCCCCCEEEEECCCCEEEEEEECC---CC-------------------CCEEEECCEECCC-CCHHHHHHHHHHHHHHH Q ss_conf 7578984346812781079999717---88-------------------8579987872566-52068999999742167 Q gi|254781016|r 46 NLPLNNSLSLSLGHLGTITHITVID---SD-------------------ADCIILNGQKISS-QSSFFKKTTQFCDLFRQ 102 (355) Q Consensus 46 ~lP~n~SiS~TL~~~~T~T~v~~~~---~~-------------------~d~~~lnG~~~~~-~~~~~~ri~~~l~~~r~ 102 (355) .=|=||||=+-.|.+-|-| |+-.+ .. +|++.++...... -+..++-|...++.+.+ T Consensus 18 vePG~pailvAVDrfvtvt-ve~~~adt~~~~~i~S~~l~~~pv~w~r~~g~lv~~d~~dGqqA~s~l~yVv~AIe~~e~ 96 (367) T TIGR01220 18 VEPGYPAILVAVDRFVTVT-VEDADADTDAADVIQSSDLSSEPVRWRRRDGKLVVDDADDGQQAESALKYVVAAIEVVEK 96 (367) T ss_pred ECCCCCEEEEEECCEEEEE-EECCCCCCCCCCCEEECCCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 3777955999975658999-863567543445145211477760346426857872377435566457876678999999 Q ss_pred HC--------CCEEEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--------CCC-CCHHH Q ss_conf 61--------943999985023--321101232247999999999981889998899988652--------135-30343 Q gi|254781016|r 103 FS--------KVYFLIETSNNI--PTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL--------GSG-SACRS 163 (355) Q Consensus 103 ~~--------~~~~~I~S~N~f--PtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl--------GSG-SA~RS 163 (355) ++ -+++.|.|+=+= ---=||+||++...+.+.|++.+|++.|+..++-+||-+ ||| --+-| T Consensus 97 ya~e~n~kl~~~hL~v~S~Ld~~~GrKyGLGSSgAVtV~tVkAln~Fydl~Lsn~eifkLa~la~~~lq~~gScGDiAaS 176 (367) T TIGR01220 97 YARERNKKLKAYHLEVSSELDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNEEIFKLAVLATLELQSKGSCGDIAAS 176 (367) T ss_pred HHHHCCCCCCEEEEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 97650971102676687641057884504662078999999999986287757567889989864220689975411110 Q ss_pred HCCCCHHCCCCCCCCCC-CEE-----EEECCCCCCCCEEEEEEECCC---------CCCCCC---CHHHHHHHHHCHHHH Q ss_conf 10562002578987654-413-----101566686421589997287---------667521---056798876185689 Q gi|254781016|r 164 FYRGFCEWICGTDQNGM-DSF-----AVPFNNQWPDLRIGLLKIIDR---------EKKIGS---REAMEITRHHSPFFT 225 (355) Q Consensus 164 i~GG~v~W~~g~~~~~s-ds~-----a~~~~~~~~dl~~~i~iv~~~---------~K~vsS---t~gm~~~v~tSp~y~ 225 (355) .||||..... .|.|-- +-. -.-+...||++.+-=+-+..+ ...-++ ++-|++..+.+-+|+ T Consensus 177 ~ygGWiAyst-fDhdwV~q~~~~~~v~~~L~~~WPgl~i~pL~aPk~l~lliGWTGsPASt~~LVs~vhr~k~~~~a~y~ 255 (367) T TIGR01220 177 VYGGWIAYST-FDHDWVKQKVEEVSVDEVLKKDWPGLSIEPLKAPKNLELLIGWTGSPASTADLVSEVHRRKEEKSAAYE 255 (367) T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHCHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHH T ss_conf 1110333057-666888755413035888614778850220679986779886317887776788888740467623688 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCE Q ss_conf 99973055099999999809999999999999998999870389956865788999999999974289619999777981 Q gi|254781016|r 226 QWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPN 305 (355) Q Consensus 226 ~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPN 305 (355) .-+++...=++.|+.|++.+|...+-.-+.++=+.|. -|+..-++.-.||+-..+=+.- +....++=|-.||== T Consensus 256 rFl~~s~~CVe~~i~af~tg~i~~~~k~Ir~nR~~la--~ld~e~gv~IeTe~Lk~LCD~a----E~yggAAK~SGAGGG 329 (367) T TIGR01220 256 RFLEKSRDCVESLITAFETGDIKSVQKEIRKNRQLLA--RLDDEVGVDIETEKLKALCDLA----EAYGGAAKSSGAGGG 329 (367) T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHCCCCCCEEECHHHHHHHHHH----HHCCCCCCCCCCCCC T ss_conf 8887678999999864315773257888899999998--5101142023444366554264----311122377888874 Q ss_pred ---EEEEECHH--HHHHHHHHHHHCCC Q ss_conf ---79995589--89999999763210 Q gi|254781016|r 306 ---LKLLFTHK--IEETIKQFFPEITI 327 (355) Q Consensus 306 ---v~il~~~~--~~~~i~~~l~~i~~ 327 (355) +.||=.+. +...|.+.=..-++ T Consensus 330 DCGIai~d~~~srdi~~~~~~We~~Gi 356 (367) T TIGR01220 330 DCGIAILDAKASRDILRVRQEWEKDGI 356 (367) T ss_pred CHHHHEEHHHHHCCCHHHHHHHHHCCC T ss_conf 411212200231360578888886688 No 35 >PRK01726 consensus Probab=98.40 E-value=0.00021 Score=51.15 Aligned_cols=251 Identities=14% Similarity=0.090 Sum_probs=137.0 Q ss_pred EEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHC Q ss_conf 89748842488116776701175789843468127810799997178885799878725665206899999974216761 Q gi|254781016|r 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFS 104 (355) Q Consensus 25 ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~ 104 (355) .|-|-.|+.| +--|||+.- .=.-.|+=..+ +++-+-+++. .+.+.+.+.+........ -.-|.+.++.+++.. T Consensus 25 ~aPAKINL~L-~V~gkR~DG--YH~L~Sl~~~i-dl~D~i~i~~--~~~~~i~~~~~~~~i~~~-~Nli~kA~~~l~~~~ 97 (312) T PRK01726 25 PSPAKLNLFL-YINGKRPDG--YHELQTLFQFL-DFGDWLDISI--REDNQIVLTPEIPNLKTE-DNLIYRAAKLLQQKT 97 (312) T ss_pred ECCEEECCCC-CCCCCCCCC--CCEEEEEEEEE-CCCCEEEEEE--CCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHHH T ss_conf 4630480450-207828999--85268999994-6896999999--689978993678999886-759999999999976 Q ss_pred CC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCE Q ss_conf 94--3999985023321101232247999999999981889998899988652135303431056200257898765441 Q gi|254781016|r 105 KV--YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDS 182 (355) Q Consensus 105 ~~--~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds 182 (355) +. .+.|.-+-|.|.+|||+.-+|-.||+..+++++++++++.+++..+|+....-..-.++|+-+. ..|.++.-. T Consensus 98 ~~~~~~~I~l~KnIPvgAGLGGGSSdAAavL~~Ln~l~~l~ls~~~L~~ia~~iGADVPffl~~~~a~-~~GiGE~l~-- 174 (312) T PRK01726 98 NCQLGANIHLDKILPMGGGVGGGSSNAATALVALNYLWQTNLSIDELAKLGLTLGADVPIFVHGHAAF-AEGVGEKIT-- 174 (312) T ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCEE-EECCCCEEE-- T ss_conf 99876389997378665677754346999999999984469998999999986189816686177789-988986820-- Q ss_pred EEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 31015666864215899972876675210567988761856899997305509999999980999999999999999899 Q gi|254781016|r 183 FAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMH 262 (355) Q Consensus 183 ~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mH 262 (355) .+.. ++.. +++|.. .--.||..+=....- + -......+.++..---.+|| - T Consensus 175 -~i~~----~~~~--~lLv~P--~i~vST~~vf~~~~l-~-----~~~~~~~~~~~l~~~~~NDL--------------E 225 (312) T PRK01726 175 -YCEP----PEKW--FVVLKP--DDSISTAVIFQDPNL-P-----RNTPKKSLEQLLSEPYKNDC--------------E 225 (312) T ss_pred -ECCC----CCCE--EEEECC--CCCCCCHHHHHCCCC-C-----CCCCHHHHHHHHHHHHCCCH--------------H T ss_conf -6677----7666--999899--998687799709675-5-----47631149999860611644--------------8 Q ss_pred HHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC-HHHHHHHHHHHHHCC Q ss_conf 9870389956865788999999999974289619999777981799955-898999999976321 Q gi|254781016|r 263 ATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFT-HKIEETIKQFFPEIT 326 (355) Q Consensus 263 a~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~-~~~~~~i~~~l~~i~ 326 (355) .....- .|+--++.+.+.++ |- +--| ..||.|+-+|. ++.+++|.+.+|+-- T Consensus 226 ~~a~~~-------~PeI~~i~~~L~~~---~~-arMS-GSGST~FglF~sk~eA~ki~~~~p~~~ 278 (312) T PRK01726 226 KVVINH-------YSEVEEALNWLLQY---AP-ARLT-GTGACVFAEFDHEASAQAVFRQKPEAF 278 (312) T ss_pred HHHHHH-------CHHHHHHHHHHHHC---CC-CEEE-CCCCEEEEEECCHHHHHHHHHHCCCCC T ss_conf 999986-------89999999998613---89-8367-538049999799999999998689764 No 36 >PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Probab=98.21 E-value=0.00024 Score=50.80 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=87.0 Q ss_pred EECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC-CCCHHHHHHHHHHHHHHHHC Q ss_conf 97488424881167767011757898434681278107999971788857998787256-65206899999974216761 Q gi|254781016|r 26 AFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS-SQSSFFKKTTQFCDLFRQFS 104 (355) Q Consensus 26 a~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~-~~~~~~~ri~~~l~~~r~~~ 104 (355) +.|-.|..|-= -||||. . -.+ -|+=.++.+++-+-++ .+...+.+.+.|.... .+.. -+.+.++.++... T Consensus 3 s~AKINL~L~V-~~kRd~-y-H~l-~s~~~~i~dl~D~i~i--~~~~~~~~~~~~~~~~~~~~N---lv~ka~~~l~~~~ 73 (254) T PRK04181 3 SYAKVNIFLKI-TGKRGN-Y-HEL-ISRFVLVKDLFDEIEF--VDDSAKSFEIIGNFDCPLEEN---IIFKAYQELKSKG 73 (254) T ss_pred CCCEECCCEEE-CCCCCC-C-CEE-EEEEEEHHHCCEEEEE--EECCCCCEEEECCCCCCCCCC---HHHHHHHHHHHHC T ss_conf 76537674357-753499-8-732-5477782008579999--988999589978888885415---9999999998753 Q ss_pred ------C--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCC Q ss_conf ------9--43999985023321101232247999999999981889998899988652135303431056200257898 Q gi|254781016|r 105 ------K--VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTD 176 (355) Q Consensus 105 ------~--~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~ 176 (355) . ..+.|.-+-|+|.+|||+.-+|-.||.-.++++.++++++.+++..+|+...---.-.++|+=..|..|.+ T Consensus 74 ~~~~~~~~~~~~~I~l~KnIP~gAGLGGGSSdAAa~L~~l~~~~~l~ls~~~L~~ia~~lGaDVPffl~g~~~a~~~G~G 153 (254) T PRK04181 74 FSNELIEFFSKLAIEVTKNIPTGAGLGGGSSNAATFLLMANEILNLKLSLEELINIGSKIGADVAFFISGYKSANVSGIG 153 (254) T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEECCCCEEEEECCC T ss_conf 32343113664179995257665678874668999999999982899999999998753189824497578637887577 Q ss_pred C Q ss_conf 7 Q gi|254781016|r 177 Q 177 (355) Q Consensus 177 ~ 177 (355) + T Consensus 154 e 154 (254) T PRK04181 154 E 154 (254) T ss_pred C T ss_conf 3 No 37 >PRK03288 consensus Probab=98.19 E-value=0.00044 Score=48.93 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=128.7 Q ss_pred ECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECC--EECCCCCHHHHHHHHHHHHHHHHC Q ss_conf 748842488116776701175789843468127810799997178885799878--725665206899999974216761 Q gi|254781016|r 27 FLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNG--QKISSQSSFFKKTTQFCDLFRQFS 104 (355) Q Consensus 27 ~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG--~~~~~~~~~~~ri~~~l~~~r~~~ 104 (355) -|-.|+.| +=-|||+.- .=.-.|+-..+| ++-+-+++. .+++++.+.+ ...+.++ .-|.+..+.+++.. T Consensus 8 PAKINL~L-~V~gkR~DG--YH~i~S~~~~id-l~D~i~i~~--~~~~~i~~~~~~~~~~~~~---Nlv~ka~~~l~~~~ 78 (283) T PRK03288 8 PAKLNLFL-YITGQRADG--YHTLQTLFQFLD-YGDTLTIEP--RDDGEIRLLTPVEGVENED---NLIVRAARLLMKTA 78 (283) T ss_pred CEEEECCC-CCCCCCCCC--CCEEEEEEEECC-CCCEEEEEE--CCCCCEEEECCCCCCCCCC---CHHHHHHHHHHHHH T ss_conf 01581140-338869999--872578999817-882999999--8999789955876787754---18999999999976 Q ss_pred --------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCC Q ss_conf --------943999985023321101232247999999999981889998899988652135303431056200257898 Q gi|254781016|r 105 --------KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTD 176 (355) Q Consensus 105 --------~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~ 176 (355) ...+.|.-+-|.|.+|||+..+|-.||+-.+++++++++++.+++..+|+..-.--.-.++|+ ..|..|.+ T Consensus 79 ~~~~~~~~~~g~~I~l~KnIPv~AGLGGGSSdAAa~L~~L~~l~~l~ls~~~l~~ia~~iGaDVPffl~~~-~a~~~G~G 157 (283) T PRK03288 79 ADSGRLPAGSGADISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSDDELAELGLTLGADVPVFVRGH-AAFAEGVG 157 (283) T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEECCC-CEEEECCC T ss_conf 44024566666079994367644567877615999999999985899999999999998589831054277-58998288 Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 76544131015666864215899972876675210567988761856899997305509999999980999999999999 Q gi|254781016|r 177 QNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 177 ~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) +.-. .+.. ++.. +++|.. ..-.||.-+=... .+.. ......+..+...-..+||+... .+ T Consensus 158 e~l~---~~~~----~~~~--~llv~P--~~~vST~~vy~~~---~~~~---~~~~~~~~~~l~~~~~Ndle~~a---~~ 217 (283) T PRK03288 158 EILT---PVDP----PEKW--YLVAHP--GVSIPTPVIFKDP---ELPR---NTPKRSIETLLKCEFSNDCEVIA---RK 217 (283) T ss_pred CEEE---ECCC----CCCE--EEEECC--CCCCCHHHHHCCC---CCCC---CCCCCCHHHHHHCHHCCCHHHHH---HH T ss_conf 6814---7677----8756--999899--9997828984494---4467---87534899997371106469999---87 Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECH-HHHHHHHHHHHH Q ss_conf 99989998703899568657889999999999742896199997779817999558-989999999763 Q gi|254781016|r 257 NALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTH-KIEETIKQFFPE 324 (355) Q Consensus 257 dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~-~~~~~i~~~l~~ 324 (355) . .|+-.++++ .+++.+- +--| .-|+.|+-+|.. +++++|.+.+++ T Consensus 218 ~------------------~peI~~~~~---~l~~~~~-~~MS-GSGSt~Fglf~~~~~A~ki~~~~p~ 263 (283) T PRK03288 218 R------------------FREVDAALS---WLLEYAP-SRLT-GTGACVFAEFDTESEARQVLEQAPE 263 (283) T ss_pred H------------------HHHHHHHHH---HHHCCCC-CCEE-CHHHEEEEEECCHHHHHHHHHHCCC T ss_conf 5------------------599999999---9855398-7122-6404179998999999999996886 No 38 >KOG1511 consensus Probab=98.13 E-value=0.0013 Score=45.64 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=68.5 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-----------HHHHHHHHHHC--------CC-CCHHHHCCC Q ss_conf 99998502332110123224799999999998188999-----------88999886521--------35-303431056 Q gi|254781016|r 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK-----------SESLSRVARLG--------SG-SACRSFYRG 167 (355) Q Consensus 108 ~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~-----------~~~lS~lARlG--------SG-SA~RSi~GG 167 (355) +.+.-.-..|.+|||+||||=-.||+.++..++|.-.. ..=+..+|-.| || -.+-|.||| T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg 211 (397) T KOG1511 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGG 211 (397) T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCC T ss_conf 69998446787677650689999999999997356899853000132269999988750560114887654212211476 Q ss_pred CHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 2002578987654413101566686421589997287667521056798876 Q gi|254781016|r 168 FCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRH 219 (355) Q Consensus 168 ~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~ 219 (355) .....+|.. +..-++.|.++|+ +++++. --||..|-..|. T Consensus 212 ~i~f~kg~~--------~~~Lk~~~~L~il--ltnTrv--~RnTk~lVa~Vr 251 (397) T KOG1511 212 LISFKKGVE--------IESLKHLPPLRIL--LTNTRV--PRNTKALVAGVR 251 (397) T ss_pred EEEEECCCC--------CEECCCCCCCEEE--EECCCC--CCCHHHHHHHHH T ss_conf 478614765--------0203668873389--871656--751999999999 No 39 >pfam00288 GHMP_kinases_N GHMP kinases N terminal domain. This family includes homoserine kinases, galactokinases and mevalonate kinases. Probab=97.84 E-value=2.8e-05 Score=57.33 Aligned_cols=48 Identities=44% Similarity=0.544 Sum_probs=42.6 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC Q ss_conf 998502332110123224799999999998188999889998865213 Q gi|254781016|r 110 IETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGS 157 (355) Q Consensus 110 I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGS 157 (355) |....++|.++||+|||+..+|++.|+.++++++++.+++-.+|.... T Consensus 2 i~i~s~iP~g~GLgSSaa~~~a~~~al~~~~~~~l~~~~l~~~a~~~E 49 (67) T pfam00288 2 IEIESNIPLGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAE 49 (67) T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 257568998678655699999999999999589989999999999999 No 40 >COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Probab=97.82 E-value=0.0044 Score=41.91 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=104.4 Q ss_pred CCCCEEEEEC-CCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 8984346812-781079999717888579987872566520689999997421676194399998502332110123224 Q gi|254781016|r 49 LNNSLSLSLG-HLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSAS 127 (355) Q Consensus 49 ~n~SiS~TL~-~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSAS 127 (355) ...||-..+. .-++++.|.+.++ -.+++||++.+. +-....++++.... +.|..+-.||..+|++-|++ T Consensus 25 ~SGSiGaGv~l~~gv~v~v~~~~~--~~v~~Ng~~~d~-----~~~~~v~e~L~~~~---~~v~~~~~~P~G~G~G~Sga 94 (283) T COG1829 25 KSGSIGAGVALERGVTVEVRFGEG--TGVRLNGKKIDL-----PITRKVIEKLGPDG---VGVRIESPVPLGCGYGVSGA 94 (283) T ss_pred CCCCCCEEEEECCCEEEEEEECCC--CEEEECCEECCC-----HHHHHHHHHHCCCC---CCEEEEECCCCCCCCCHHHH T ss_conf 678864237963862699996587--358889963130-----26999999847668---62699851798865414479 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH-------HCCCCCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEE Q ss_conf 799999999998188999889998865-------2135303431056200257898765441310156668642158999 Q gi|254781016|r 128 GFAALTLALFRIYSIPEKSESLSRVAR-------LGSGSACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLK 200 (355) Q Consensus 128 gfAALa~Al~~~~~~~~~~~~lS~lAR-------lGSGSA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~i 200 (355) +.-+.++|++..++++ .+.+.+.|- -|=|--.-=.+||+|+=.+ ++..+ ++.-..-.++.++++... T Consensus 95 ~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gtGLGDVvAq~~GGlViR~~-pG~Pg---~~~vd~Ip~~~~~V~~~~ 168 (283) T COG1829 95 GALGTALALAEELGLG--EESAARIAHVAEVENGTGLGDVVAQYTGGLVIRVK-PGGPG---EGEVDRIPVPGLRVITIS 168 (283) T ss_pred HHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEC-CCCCC---EEEEEEEECCCCEEEEEE T ss_conf 9999999988664998--78999988899987178704788875085799831-89998---578988604882699997 Q ss_pred ECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 72876675210567988761856899997305509999999980999999999999 Q gi|254781016|r 201 IIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 201 v~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) -++...++ +-++.- ..++ ...-...+.+.+++-+++.|.+.+.+ T Consensus 169 --~g~l~T~~-------vi~~~~-~~~i--~~~g~~~l~ellk~Ptle~f~~~a~~ 212 (283) T COG1829 169 --LGELSTKS-------VITDEV-VRKI--NEAGKRALAELLKNPTLENFMEEARE 212 (283) T ss_pred --CCCCCHHH-------HHHHHH-HHHH--HHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf --36666777-------630678-9999--99999999998839999999999999 No 41 >TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process. Probab=97.69 E-value=0.0028 Score=43.29 Aligned_cols=239 Identities=16% Similarity=0.145 Sum_probs=132.0 Q ss_pred EEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCC------------CEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 07999971788857998787256652068999999742167619------------439999850233211012322479 Q gi|254781016|r 62 TITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSK------------VYFLIETSNNIPTKAGLASSASGF 129 (355) Q Consensus 62 T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~------------~~~~I~S~N~fPtaaGLASSASgf 129 (355) -+-+|+....+.|.+.+.|...-..+. ..-+.+.++.+.+.+. ..+.|.-+=+.|++||||--+|-+ T Consensus 40 D~i~i~~~~q~~~i~l~~~~~~~~~e~-~NL~yrAa~Ll~~~~~~~nfsH~~~~~~~G~~I~~~K~iP~~aGLgGGSsdA 118 (322) T TIGR00154 40 DKIEISVRSQDDDIRLSKGDSDVPDEE-RNLIYRAAKLLKNKANSKNFSHSVIKVKKGVNIEITKVIPMAAGLGGGSSDA 118 (322) T ss_pred CEEEEEEECCCCCEEECCCCCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHH T ss_conf 737999853578478737789888620-1069999999998510023334301256761489864146657765404579 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCC-CCHHC-CCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCC Q ss_conf 9999999998188999889998865213530343105-62002-578987654413101566686421589997287667 Q gi|254781016|r 130 AALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYR-GFCEW-ICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKK 207 (355) Q Consensus 130 AALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~G-G~v~W-~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~ 207 (355) ||+-.+|+.+++++|+.++|..|+-..-.--.-.|+| +-+.= +.|+-.+ +++++-++..++|. +++. T Consensus 119 A~~L~~LN~LW~~~LS~~EL~~lG~~lGaDvpffv~GY~~A~AtG~GE~i~-------~~~e~P~e~W~~~~----kP~~ 187 (322) T TIGR00154 119 AAVLVGLNQLWNLNLSLEELAELGATLGADVPFFVSGYGTAFATGRGEIIT-------PLEEEPPEKWVVIA----KPRS 187 (322) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCC-------CCCCCCCCCEEEEE----CCCC T ss_conf 999998767762168878999998874698307863633121123442505-------78889874038897----2798 Q ss_pred C-CCCHHHHHHHHHCHHHHHHHHH-HHHHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHH Q ss_conf 5-2105679887618568999973-055099-------999999809999999999999998999870389956865788 Q gi|254781016|r 208 I-GSREAMEITRHHSPFFTQWTQQ-ISTDLA-------HIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKE 278 (355) Q Consensus 208 v-sSt~gm~~~v~tSp~y~~r~~~-~~~~~~-------~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~ 278 (355) | -||...=+.-+ -.|=+..+.. .+.+.+ -+++++..+-+..+..-..+| +-.+.+... ++ T Consensus 188 ~~~ST~~vyq~~~-qkfGknyLp~~~~~~~~~ktihaG~~l~~i~~~~~~~~~~~~~ND---lEkv~l~~~-------~~ 256 (322) T TIGR00154 188 VSVSTAVVYQAYK-QKFGKNYLPRNTPKRAKEKTIHAGGLLKKIEEKLLQLLDSNLKND---LEKVALDAH-------TE 256 (322) T ss_pred CCCCCHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---CCHHHHCCC-------CC T ss_conf 5327389871245-531522478777656776320025102456676577665404772---020000157-------61 Q ss_pred HHHHHHHHHHHH-HCCCEEE-EEECCCCEEEEEECH-HHHHHHHHHHHHCCC Q ss_conf 999999999974-2896199-997779817999558-989999999763210 Q gi|254781016|r 279 TIQGMERVWDAR-QQSIPIY-FTLDAGPNLKLLFTH-KIEETIKQFFPEITI 327 (355) Q Consensus 279 t~~ii~~v~~~R-~~g~~v~-fT~DAGPNv~il~~~-~~~~~i~~~l~~i~~ 327 (355) =-++. ..+. .++-+.. +| ..||.|+-||+. ..++.|.+--+|--. T Consensus 257 V~~~l---~~l~~~g~~~~~f~s-GsG~~vF~l~~~e~ea~~v~~~a~E~L~ 304 (322) T TIGR00154 257 VAQAL---NWLLEYGLAPERFLS-GSGPCVFALFDEEAEAEQVLEQAPEKLN 304 (322) T ss_pred HHHHH---HHHHHHCCCCEEEEE-CCCHHHHHCCHHHHHHHHHHHHCCHHHC T ss_conf 89999---999860588425764-4854664215114678999873440005 No 42 >COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Probab=97.12 E-value=0.032 Score=35.91 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=111.0 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCCCCCCCCCCCEEEEEC Q ss_conf 99998502332110123224799999999998188999889998865213530343105620025789876544131015 Q gi|254781016|r 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187 (355) Q Consensus 108 ~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~~g~~~~~sds~a~~~ 187 (355) ..+.-..++|.+.|+|||.+-.+|.++|....++..++..++.+++-...-|-+ -+|-+.+....- +++. +.+ T Consensus 84 i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPtDs-iiF~~~tlFd~r---~g~~---~~~ 156 (293) T COG4542 84 IDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPTDS-IIFDKATLFDQR---EGRV---IEF 156 (293) T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC-EECCCCEEEHHC---CCHH---HHH T ss_conf 369986366555565634788999999999996787788899999862587654-000561000220---4308---886 Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 66686421589997287667521056798876185689999730550999999998099999999999999989998703 Q gi|254781016|r 188 NNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIA 267 (355) Q Consensus 188 ~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~ 267 (355) ...-|.|.++++ +.+-+--|.--++--. ....-+-.++...-++...+|++-+|-..+|+.+-.++..=. . +. T Consensus 157 ~g~~PpL~ilv~----e~~~~v~T~~y~q~~r-~e~~~~~~~e~~~l~~~v~~A~~~~~~~~lG~AAT~SAv~~Q-~-~L 229 (293) T COG4542 157 LGEMPPLHILVF----EGKGTVETVDYNQPPR-GEKLLAPLAELGNLINLVEKALKVGDPKLLGEAATLSAVKNQ-D-RL 229 (293) T ss_pred CCCCCCEEEEEE----CCCCCEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-C-CC T ss_conf 378996279997----4898233331467854-656554499999999999998723898898788889988632-0-16 Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECHHHH Q ss_conf 899568657889999999999742896199997779817999558989 Q gi|254781016|r 268 ASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIE 315 (355) Q Consensus 268 s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~il~~~~~~ 315 (355) . +|.--++.+.+.+...-|+.|.-+ |.-+-+++..... T Consensus 230 P-------K~~~~~lL~l~e~~~~~Gv~VAHS---GtmlGli~D~~~~ 267 (293) T COG4542 230 P-------KPGLNELLRLVEETCAIGVIVAHS---GTMLGLIYDRKYA 267 (293) T ss_pred C-------CHHHHHHHHHHHHHCCCCEEEECC---CCEEEEEECCCCC T ss_conf 8-------323899999998736544588416---7467765403355 No 43 >pfam08544 GHMP_kinases_C GHMP kinases C terminal. This family includes homoserine kinases, galactokinases and mevalonate kinases. Probab=96.44 E-value=0.021 Score=37.19 Aligned_cols=75 Identities=23% Similarity=0.177 Sum_probs=53.9 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECC--CCEEEEEE-CHHHH Q ss_conf 9999809999999999999998999870389956865788999999999974289619999777--98179995-58989 Q gi|254781016|r 239 KQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDA--GPNLKLLF-THKIE 315 (355) Q Consensus 239 ~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DA--GPNv~il~-~~~~~ 315 (355) ..++.++|++.++++++.+... +....+.|.-.+++ ..+++.|.....-..+ ||.|++|+ .+++. T Consensus 2 ~~~l~~~d~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~---~~~~~~G~~~a~~sGsg~G~~v~~l~~~~~~a 69 (82) T pfam08544 2 LEALREGDLELLGELLNENALL---------LYLGILSPELDELL---EELRELGALGAKLSGSGGGPTVFALFKDEEDA 69 (82) T ss_pred HHHHHCCCHHHHHHHHHHHHHC---------CHHHCCCHHHHHHH---HHHHHCCCCEEECCCCCCCCEEEEEECCHHHH T ss_conf 3788818999999999999864---------05505778899999---99998599855412589888588885898999 Q ss_pred HHHHHHHHHC Q ss_conf 9999997632 Q gi|254781016|r 316 ETIKQFFPEI 325 (355) Q Consensus 316 ~~i~~~l~~i 325 (355) +.|.+.+.+. T Consensus 70 ~~i~~~l~~~ 79 (82) T pfam08544 70 EEVAEALREA 79 (82) T ss_pred HHHHHHHHHH T ss_conf 9999999987 No 44 >PTZ00290 galactokinase; Provisional Probab=96.28 E-value=0.12 Score=31.84 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=76.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCE-EEECCCCEEEEECCCCCCHHHCCCCCC--CEEEEEC--CCCEEEEEEECCCCCCEEEE Q ss_conf 488988887403467877637-897488424881167767011757898--4346812--78107999971788857998 Q gi|254781016|r 4 SLRHILHRYIGECNPKINEKS-SAFLPSNIALCKYWGKRDSKLNLPLNN--SLSLSLG--HLGTITHITVIDSDADCIIL 78 (355) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-ta~ap~NIALIKYWGK~d~~l~lP~n~--SiS~TL~--~~~T~T~v~~~~~~~d~~~l 78 (355) +++-.|.+.-++...+..... .|+||=-+=||==+=-++.-..||.-= .+=+... .-.+...+.+.......+.+ T Consensus 17 ~~~~~f~~~~~~~~~~~~~~~~farAPGRVNLIGEHtDYngg~VLP~AI~~~t~i~va~~~~~~~~~~~~~~~~~~~~~~ 96 (468) T PTZ00290 17 TLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATETDEHFVL 96 (468) T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEECEEECCCEEEEEEECCCCCCCEEEEECCCCCCCCC T ss_conf 99999999857998654212479977872654023102289854674701680999984257877469985067765215 Q ss_pred CCEECCCCC----HHHHHHHH-HHHHHHHHC---C-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC------ Q ss_conf 787256652----06899999-974216761---9-43999985023321101232247999999999981889------ Q gi|254781016|r 79 NGQKISSQS----SFFKKTTQ-FCDLFRQFS---K-VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIP------ 143 (355) Q Consensus 79 nG~~~~~~~----~~~~ri~~-~l~~~r~~~---~-~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~------ 143 (355) +.-...... .++.-+.. .++...... . ..+.|.-.-++|.++||.||||--.|++.|++.++.+. T Consensus 97 ~~~~~~~~~~~W~nY~~Gv~~~~l~~~g~~~~~~~~~G~~~~v~g~VP~GsGLSSSAAleva~~~al~~~~~~~~~~~~~ 176 (468) T PTZ00290 97 DHLGGAKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPT 176 (468) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 76677888987631789999999997198767788860599998988774157899999999999999987422344333 Q ss_pred -----------CCHHHHHHHHHH Q ss_conf -----------998899988652 Q gi|254781016|r 144 -----------EKSESLSRVARL 155 (355) Q Consensus 144 -----------~~~~~lS~lARl 155 (355) .+..++..||++ T Consensus 177 ~~~~~~~i~~~~sk~e~~~la~~ 199 (468) T PTZ00290 177 SPGRRYSILPPMSKEELIELAKQ 199 (468) T ss_pred CCCCCCCCCCCCCHHHHHHHHHH T ss_conf 43211123455567789999999 No 45 >KOG1537 consensus Probab=95.98 E-value=0.095 Score=32.61 Aligned_cols=200 Identities=20% Similarity=0.204 Sum_probs=115.5 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HH-HHHHHCCCCCHHH------------------- Q ss_conf 399998502332110123224799999999998188999889---99-8865213530343------------------- Q gi|254781016|r 107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSES---LS-RVARLGSGSACRS------------------- 163 (355) Q Consensus 107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~---lS-~lARlGSGSA~RS------------------- 163 (355) .-++.+.|-.|-.+|++||+++-.|-+.-.+...++.++... -+ .++|. -..+.-+ T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierh-pdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355) T KOG1537 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERH-PDNAVAEMMGGFLGSFLRALLESEAK 172 (355) T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHEECCHHHHCCCCCCCCHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHCHHHHH T ss_conf 00254137765655523034566544213044765287610230178887647-17789999866789999875876664 Q ss_pred ------------HCCCCHHCCCCCCCCCCCEEEEECCCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHC-HHHH-HHH Q ss_conf ------------1056200257898765441310156668-642158999728766752105679887618-5689-999 Q gi|254781016|r 164 ------------FYRGFCEWICGTDQNGMDSFAVPFNNQW-PDLRIGLLKIIDREKKIGSREAMEITRHHS-PFFT-QWT 228 (355) Q Consensus 164 ------------i~GG~v~W~~g~~~~~sds~a~~~~~~~-~dl~~~i~iv~~~~K~vsSt~gm~~~v~tS-p~y~-~r~ 228 (355) +.||||+-...+-.| ...+..-.| +|+..++++.+.+- +|.-|.-...|+ |.-+ .| T Consensus 173 ~~~~~ad~ilp~~~gg~~li~~lpP~d----lg~~~r~pw~~~lk~i~viP~Fel----~T~k~R~vLPt~yp~~d~V~- 243 (355) T KOG1537 173 VSGYHADNILPAIMGGFVLIRNLPPLD----LGKPLRFPWDKDLKFILVIPDFEL----PTKKMRAVLPTEYPMVDHVW- 243 (355) T ss_pred HCCCCHHHHCCCCCCCEEEECCCCCCC----CCCCCCCCCCCCCEEEEEECCCCC----CCHHHHHHCCCCCCCEEEEE- T ss_conf 237887772501258705505889522----366333777766138999444446----60455420675566300220- Q ss_pred HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCC-EEEEEECCCCEE Q ss_conf 73055099999999809-9999999999999989998703899568657889999999999742896-199997779817 Q gi|254781016|r 229 QQISTDLAHIKQAIIDQ-DFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSI-PIYFTLDAGPNL 306 (355) Q Consensus 229 ~~~~~~~~~~~~ai~~~-Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~-~v~fT~DAGPNv 306 (355) .-.++..+..|+.++ |---++.-.|+| +.|+-++.+ +-|...+|...+..--.-|. .++.+ .|||.+ T Consensus 244 --NlqrlA~LttAl~~~p~n~~L~y~~m~D--kvhqPyRa~------LIPGl~~il~~~~p~t~pGl~GiclS-GAGPT~ 312 (355) T KOG1537 244 --NLQRLAALTTALLEGPDNVMLGYALMSD--KVHQPYRAP------LIPGLEAILKAALPATYPGLFGICLS-GAGPTA 312 (355) T ss_pred --CHHHHHHHHHHHHCCCCCHHHHHHHHHC--CCCCCCCCC------CCCCHHHHHHHHCCCCCCCEEEEEEC-CCCCEE T ss_conf --0888999999981499713555566532--124753145------57418999986185567862458843-889736 Q ss_pred EEEECHHHH---HHHHHHHHHCCC Q ss_conf 999558989---999999763210 Q gi|254781016|r 307 KLLFTHKIE---ETIKQFFPEITI 327 (355) Q Consensus 307 ~il~~~~~~---~~i~~~l~~i~~ 327 (355) .-|-.++-. +++.+.|...++ T Consensus 313 lAlatenf~eI~~~mv~~F~K~G~ 336 (355) T KOG1537 313 LALATENFQEIGEKMVEAFWKVGH 336 (355) T ss_pred EEEECCCHHHHHHHHHHHHHHHCC T ss_conf 887437478999999999986184 No 46 >TIGR00131 gal_kin galactokinase; InterPro: IPR000705 Galactokinase catalyses the first reaction in the galactose metabolism pathway, the ATP-dependent phosphorylation of galactose, yielding galactose-1-phosphate , . Deficiency in this enzyme results in the disease galactosemia, which is responsible for the formation of cataracts in newborn babies, and is possibly responsible for presenile cataracts in adults . In yeast, the GAL3 gene product is required for the GAL4-mediated induction of other enzymes involved in galactose metabolism. The induction of GAL1 production then reinforces this process, increasing the expression of other galactose-inducible genes. GAL3 has been shown to be similar to the GAL1 protein .; GO: 0004335 galactokinase activity, 0005524 ATP binding, 0006012 galactose metabolic process, 0046835 carbohydrate phosphorylation. Probab=95.00 E-value=0.21 Score=30.17 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=73.3 Q ss_pred HHHHHHHCCCCCCCCCEEEE-CCCCEEEEECCCCCCHHHCCCCCC----CEEEEE--CCCCEEEEEEECCCCCCEEEEC- Q ss_conf 88887403467877637897-488424881167767011757898----434681--2781079999717888579987- Q gi|254781016|r 8 ILHRYIGECNPKINEKSSAF-LPSNIALCKYWGKRDSKLNLPLNN----SLSLSL--GHLGTITHITVIDSDADCIILN- 79 (355) Q Consensus 8 ~~~~~~~~~~~~~~~~~ta~-ap~NIALIKYWGK~d~~l~lP~n~----SiS~TL--~~~~T~T~v~~~~~~~d~~~ln- 79 (355) +...|.++-+.+ ...+++ ||==.=||==+==++.--.||+== -+|.+- |....-+...+.+.+-|++-|| T Consensus 4 ~~~~F~~~~~~~--~~~~~~faPGRVNLIGEHtDYnDg~VlPcAid~~t~~av~~rdd~~~~~~~~n~~na~~~e~slD~ 81 (500) T TIGR00131 4 LQKIFASAFGEK--PDFTARFAPGRVNLIGEHTDYNDGFVLPCAIDFGTLVAVAERDDKNVRVYAANADNAKFDEFSLDL 81 (500) T ss_pred HHHHHHHHHCCC--CCEEEEECCCCEEEEEEEEEECCCEECCCHHCCCCEEEEEEECCCCEEEEEECCCCCCCCCEECCC T ss_conf 889999860889--766999778846221312422685755501054716875430488606886258864431000376 Q ss_pred ---CEECCCCCH------HHHHHHHHHH-HHHHHC-------CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--H Q ss_conf ---872566520------6899999974-216761-------94-39999850233211012322479999999999--8 Q gi|254781016|r 80 ---GQKISSQSS------FFKKTTQFCD-LFRQFS-------KV-YFLIETSNNIPTKAGLASSASGFAALTLALFR--I 139 (355) Q Consensus 80 ---G~~~~~~~~------~~~ri~~~l~-~~r~~~-------~~-~~~I~S~N~fPtaaGLASSASgfAALa~Al~~--~ 139 (355) +++....+. +++-+..++. ++++++ .. .+.|.-.-|+|++|||.||||=-.|.+++..+ + T Consensus 82 ~~~~~e~~iDPSv~~WaNY~kgv~~~~qS~LKK~AP~R~~~~p~~G~~~v~~GnvP~G~GLSSSAa~~~avgL~v~qA~~ 161 (500) T TIGR00131 82 PLDGSEVAIDPSVSDWANYVKGVVKVAQSYLKKLAPERFNSFPLVGADIVISGNVPTGAGLSSSAALEVAVGLAVLQAQL 161 (500) T ss_pred CCCCCCEEECCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 32355302277700013544304788888888734444544575534789965778874133899999999999988615 Q ss_pred HCCCCCHHH Q ss_conf 188999889 Q gi|254781016|r 140 YSIPEKSES 148 (355) Q Consensus 140 ~~~~~~~~~ 148 (355) +.+.++..+ T Consensus 162 g~~~~~~~~ 170 (500) T TIGR00131 162 GHLPLDSKQ 170 (500) T ss_pred CCCHHHHHH T ss_conf 874024789 No 47 >COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Probab=94.48 E-value=0.48 Score=27.71 Aligned_cols=279 Identities=17% Similarity=0.182 Sum_probs=122.8 Q ss_pred EEEECCCCEEEEECCCCCCHHHCCCCC-CCEEEEECCCCEEEEEEECCCCCCEEEECCE-ECCCCCHHHHHHHH-HHHHH Q ss_conf 789748842488116776701175789-8434681278107999971788857998787-25665206899999-97421 Q gi|254781016|r 24 SSAFLPSNIALCKYWGKRDSKLNLPLN-NSLSLSLGHLGTITHITVIDSDADCIILNGQ-KISSQSSFFKKTTQ-FCDLF 100 (355) Q Consensus 24 ~ta~ap~NIALIKYWGK~d~~l~lP~n-~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~-~~~~~~~~~~ri~~-~l~~~ 100 (355) .++.||-|+-|+- -+ ..+-.-.. --|..+++.+... |++. ++|.+.++-. ..-.+.++.+.+.. ++++| T Consensus 4 ~~fSaPGk~LlaG---dY-s~lv~glsahaia~nkr~~cs~--vrvK--skdswlfhisi~g~~knsfiEl~~~~Vf~yF 75 (337) T COG3890 4 ISFSAPGKLLLAG---DY-SILVEGLSAHAIAINKRAFCSF--VRVK--SKDSWLFHISIKGIDKNSFIELRSDFVFKYF 75 (337) T ss_pred EEECCCCCEEEEC---CC-EEEEECCEEEEEEECCCCCCCE--EEEC--CCCEEEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 4405887369840---31-1355233124787305552013--6742--6745898733013688718999999999998 Q ss_pred HHHCCC---E-------EEEEEECCCCC---CCHHHHHHHHHHHHH--HHHHHHHCCCCCH-HHHHHHHH---------H Q ss_conf 676194---3-------99998502332---110123224799999--9999981889998-89998865---------2 Q gi|254781016|r 101 RQFSKV---Y-------FLIETSNNIPT---KAGLASSASGFAALT--LALFRIYSIPEKS-ESLSRVAR---------L 155 (355) Q Consensus 101 r~~~~~---~-------~~I~S~N~fPt---aaGLASSASgfAALa--~Al~~~~~~~~~~-~~lS~lAR---------l 155 (355) +..... . +++...|.||- -.||+|||+..--|+ +++.-+.+-+.+. .++-+||. . T Consensus 76 ~~~~~~c~qnlev~~ddayy~q~~f~~d~g~KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggI 155 (337) T COG3890 76 AYLSQNCFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGI 155 (337) T ss_pred HHHHHHCCCCCEEECCHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 75414223332232323210563222147765777624688999999999988605650167899999999889971797 Q ss_pred CCC-CCHHHHCCCCHH--CCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHH- Q ss_conf 135-303431056200--2578987654413101566686421589997287667521056798876185689999730- Q gi|254781016|r 156 GSG-SACRSFYRGFCE--WICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQI- 231 (355) Q Consensus 156 GSG-SA~RSi~GG~v~--W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~- 231 (355) ||| --+-++||+.+. ...+..++-.+--++ .+-+|.+.. ..++.-++|.||-+-+ +.|-+.. T Consensus 156 GSGfDiaaA~fGsiiyrRF~p~li~~l~qig~~----nfg~y~Lmm----Gd~a~gSeTvglV~kv------~~w~ns~~ 221 (337) T COG3890 156 GSGFDIAAAIFGSIIYRRFEPGLIPKLRQIGAV----NFGDYYLMM----GDQAIGSETVGLVCKV------NKWRNSIL 221 (337) T ss_pred CCCCHHHHHHHCCEEEEECCCCHHHHHHHHCCC----CCCCEEEEE----CCCCCCCCCHHHHHHH------HHHHHCCC T ss_conf 764035676623157863483100345763750----306765662----2323685534899999------87763378 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH-------HHCCCEEEEEECCCC Q ss_conf 5509999999980999999999999999899987038995686578899999999997-------428961999977798 Q gi|254781016|r 232 STDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDA-------RQQSIPIYFTLDAGP 304 (355) Q Consensus 232 ~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~-------R~~g~~v~fT~DAGP 304 (355) ++.++...+ ...+=++ |.++.-.|+++--+..+. ++.|.+.+...+++-+.+- -..|..+.-.=.||- T Consensus 222 peelkc~de-~nsrvl~-l~~~sLdE~~s~~~~irr---slrritee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGg 296 (337) T COG3890 222 PEELKCNDE-MNSRVLN-LIKLSLDESNSKSKAIRR---SLRRITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGG 296 (337) T ss_pred HHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 588776788-8899998-886208889999999999---99999997523333411355400677602754750246788 Q ss_pred --EEEEEECHHHHHHHHH--HHHHCCCCCCC Q ss_conf --1799955898999999--97632100368 Q gi|254781016|r 305 --NLKLLFTHKIEETIKQ--FFPEITIIDPL 331 (355) Q Consensus 305 --Nv~il~~~~~~~~i~~--~l~~i~~~~~~ 331 (355) ..++|+.+. -++++ ...-+.++... T Consensus 297 gdaif~l~~~~--~e~re~w~~~gi~i~dv~ 325 (337) T COG3890 297 GDAIFLLYRPN--IEAREAWLSKGISIVDVN 325 (337) T ss_pred CCEEEEEECCC--HHHHHHHHHCCEEEEECC T ss_conf 75379984562--898887875780799714 No 48 >TIGR00144 beta_RFAP_syn beta-ribofuranosylaminobenzene 5'-phosphate synthase family; InterPro: IPR004422 This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis . In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.They have an amino-terminal domain probably related to ATP binding.. Probab=91.56 E-value=1.3 Score=24.76 Aligned_cols=280 Identities=15% Similarity=0.118 Sum_probs=157.6 Q ss_pred CCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCC--CCCEEEECCEECC-CCCHHHHHHHHHHHHHHHHCC- Q ss_conf 842488116776701175789843468127810799997178--8857998787256-652068999999742167619- Q gi|254781016|r 30 SNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS--DADCIILNGQKIS-SQSSFFKKTTQFCDLFRQFSK- 105 (355) Q Consensus 30 ~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~--~~d~~~lnG~~~~-~~~~~~~ri~~~l~~~r~~~~- 105 (355) ..+.||-.-|... -....+.++|+.-.........++ -+..-.+-++..+ .......|+.....+..+..+ T Consensus 9 ~~~~l~dl~g~~g-----~~dgg~g~~l~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 83 (337) T TIGR00144 9 LHLTLIDLNGSIG-----RVDGGVGLALEEPELEIGGKESDDLGVEFDKKLVGKLGEPYNKSVRDRVYEAAAKTLDYIGG 83 (337) T ss_pred EEEEEEECCCCCC-----CCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 0345552166422-----22455210112653144023333333101135565411045677888889989999987267 Q ss_pred -CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC---HHHHCCCCHHCCCCCC---CC Q ss_conf -4399998502332110123224799999999998188999889998865213530---3431056200257898---76 Q gi|254781016|r 106 -VYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSA---CRSFYRGFCEWICGTD---QN 178 (355) Q Consensus 106 -~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA---~RSi~GG~v~W~~g~~---~~ 178 (355) ..+.+.....||...||+|...--.|....+.+++++++...++..+.-+|.-|+ +---+|||+.=..... .+ T Consensus 84 d~~~~~~~~~~~~~~~glg~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~gg~~g~g~~~~~~gg~~~d~g~~~g~g~~ 163 (337) T TIGR00144 84 DEGFDLEVLSLFPAHSGLGSGTQLSLAVGRLVSELYGLELTARELAEIVGRGGTSGIGVAAFEDGGFLVDGGHSTGKGKE 163 (337) T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCCCCC T ss_conf 65511687530320014566512467788888887324310455666532777543301222157526645654466643 Q ss_pred CCCE------E-EEEC----CCCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHC Q ss_conf 5441------3-1015----66686-42158999728766752105679887618568999973-055099999999809 Q gi|254781016|r 179 GMDS------F-AVPF----NNQWP-DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQ-ISTDLAHIKQAIIDQ 245 (355) Q Consensus 179 ~sds------~-a~~~----~~~~~-dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~-~~~~~~~~~~ai~~~ 245 (355) ..+. - +.|. ...+| +..+ ++.+.+..+.+..+.......+..|.--.-++. ..--+..+..++.++ T Consensus 164 ~~~~~p~~~~~g~~p~p~~~~~d~p~~w~~-~~~~p~~~~~~~g~~~~~~~~~~cp~pl~~~~~~~~~~l~~~~p~~~~~ 242 (337) T TIGR00144 164 KEDFLPSSASKGAKPAPVIARLDFPEDWNV-ILAIPELDRGVFGKREVNLFQKYCPVPLEDVEKLCHLILMKMLPAVVEG 242 (337) T ss_pred CHHCCCCCCCCCCCCCCEEEECCCCCCCCE-EEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 000255321256776531221257745415-8873132111244113344554258766788999999998765566630 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH-HHHHCCCEEEEEECCCCEEEEEECHH---HHHHHHHH Q ss_conf 999999999999998999870389956865788999999999-97428961999977798179995589---89999999 Q gi|254781016|r 246 DFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVW-DARQQSIPIYFTLDAGPNLKLLFTHK---IEETIKQF 321 (355) Q Consensus 246 Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~-~~R~~g~~v~fT~DAGPNv~il~~~~---~~~~i~~~ 321 (355) |++.|++...+ +..+-... .- ....-.+++.+- .+.+.|.++.-....||.++.+..++ -...+.+. T Consensus 243 ~~~~~g~~~~~----~~~~g~~~---~~--~~~~~~~~~~~~~~~~~~g~~~~g~~~~gp~~~~~~d~~~~~~~~~~~~~ 313 (337) T TIGR00144 243 DLDDFGEALNK----LQGLGFKK---VE--LELQGPLIKGLIDLLDKDGAPGAGLSSFGPTVYAVTDEKPGGIAGALNDI 313 (337) T ss_pred HHHHHHHHHHH----HHHCCCHH---HH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH T ss_conf 15677788877----76313023---44--55533578888876541475313422247524652254401467778875 Q ss_pred HHH Q ss_conf 763 Q gi|254781016|r 322 FPE 324 (355) Q Consensus 322 l~~ 324 (355) +.+ T Consensus 314 ~~~ 316 (337) T TIGR00144 314 FGP 316 (337) T ss_pred HHC T ss_conf 200 No 49 >TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.. Probab=74.94 E-value=3.2 Score=21.96 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=3.4 Q ss_pred HHHHHHHCCC Q ss_conf 8999870389 Q gi|254781016|r 260 KMHATMIAAS 269 (355) Q Consensus 260 ~mHa~~~~s~ 269 (355) ++|+++..+. T Consensus 191 SFh~l~~Gg~ 200 (526) T TIGR02734 191 SFHALFVGGN 200 (526) T ss_pred CCCCEECCCC T ss_conf 0563210698 No 50 >KOG0631 consensus Probab=73.78 E-value=7.4 Score=19.39 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=39.6 Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCC--CCHHHHHHH-------HHHCCC--CCHHHHCC Q ss_conf 43999985023321101232247999999999981-889--998899988-------652135--30343105 Q gi|254781016|r 106 VYFLIETSNNIPTKAGLASSASGFAALTLALFRIY-SIP--EKSESLSRV-------ARLGSG--SACRSFYR 166 (355) Q Consensus 106 ~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~-~~~--~~~~~lS~l-------ARlGSG--SA~RSi~G 166 (355) ..+.|--.-+.||+.||-|||+=.++.++|..++. |.+ ...+++-.+ .-++|| +-+-|++| T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~ 213 (489) T KOG0631 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLA 213 (489) T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHH T ss_conf 6538986478789988443589999999999997608873421555405217863126758774788999987 No 51 >KOG4644 consensus Probab=72.57 E-value=7.9 Score=19.19 Aligned_cols=217 Identities=18% Similarity=0.248 Sum_probs=95.7 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH------HCCC--CCHH Q ss_conf 97421676194399998502332110123224799999999998188999889-----998865------2135--3034 Q gi|254781016|r 96 FCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSES-----LSRVAR------LGSG--SACR 162 (355) Q Consensus 96 ~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~-----lS~lAR------lGSG--SA~R 162 (355) .++.+.......|.|.+....||++||+.|+--.+....|+.++.+.....+. +-.+-| -|-| .-|- T Consensus 680 i~d~~~k~f~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G 759 (948) T KOG4644 680 ILDIFEKLFCCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCG 759 (948) T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC T ss_conf 99999997347547303245888777656888989999999986054456367689999999999988623785365305 Q ss_pred HHCCCCHHCCCC-CCCCCCCEEEEECCCCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH----- Q ss_conf 310562002578-98765441310156668-64215899972876675210567988761856899997305509----- Q gi|254781016|r 163 SFYRGFCEWICG-TDQNGMDSFAVPFNNQW-PDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDL----- 235 (355) Q Consensus 163 Si~GG~v~W~~g-~~~~~sds~a~~~~~~~-~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~----- 235 (355) .|+.|.-.=... +...+..-..+-+++.+ ..|..-.++|.+++.. --+.-.+. |-.+ || +|......+. T Consensus 760 ~im~GIK~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTR-LAkNLLQd-ViRn-~f-ar~~a~~Q~ah~l~~ 835 (948) T KOG4644 760 AIMEGIKKGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTR-LAKNLLQD-VIRN-FF-ARCKATKQKAHKLAE 835 (948) T ss_pred CHHHHHHHCCCHHHCCCCCEEEEECCCHHHHHHHHHCEEEEEECCHH-HHHHHHHH-HHHH-HH-HHHHHHHHHHHHHHH T ss_conf 12210120320212567743521017789999976207998727218-89999999-9999-99-766899999999999 Q ss_pred --HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECC--CCEEEEEEC Q ss_conf --9999999809999999999999998999870389956865788999999999974289619999777--981799955 Q gi|254781016|r 236 --AHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDA--GPNLKLLFT 311 (355) Q Consensus 236 --~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DA--GPNv~il~~ 311 (355) +++-+-++.+-++-+++.-|+-.-+-.-|...+.|+ +-.++++.+.. +.-..+.+-..| |-=++++.. T Consensus 836 ~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl------~Vr~lldmLap--h~hgesgw~AGAGGGGFiYLl~k 907 (948) T KOG4644 836 ATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPL------NVRELLDMLAP--HKHGESGWAAGAGGGGFIYLLIK 907 (948) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC------CHHHHHHHHCC--CCCCCCCHHCCCCCCCEEEEEEC T ss_conf 99999998862758789999999987651047899997------48999987460--01132120015788737999965 Q ss_pred H-HHHHHHHHHHHH Q ss_conf 8-989999999763 Q gi|254781016|r 312 H-KIEETIKQFFPE 324 (355) Q Consensus 312 ~-~~~~~i~~~l~~ 324 (355) + ...+.|..|++. T Consensus 908 EpqqkeaiEa~Lak 921 (948) T KOG4644 908 EPQQKEAIEAFLAK 921 (948) T ss_pred CCCCHHHHHHHHCC T ss_conf 88997899986016 No 52 >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Probab=56.96 E-value=15 Score=17.20 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=42.7 Q ss_pred HHHHHHHHHHHHH--------CCCCCEE-EECHHHHHHHHHHHHHHHCCCEEE-EEECCCCE--------EEEEECHHHH Q ss_conf 9999998999870--------3899568-657889999999999742896199-99777981--------7999558989 Q gi|254781016|r 254 AEKNALKMHATMI--------AASPPLL-YWQKETIQGMERVWDARQQSIPIY-FTLDAGPN--------LKLLFTHKIE 315 (355) Q Consensus 254 ~e~dal~mHa~~~--------~s~P~~~-Y~~~~t~~ii~~v~~~R~~g~~v~-fT~DAGPN--------v~il~~~~~~ 315 (355) -..++..|+..+. +...|+. .+.+......+..+.++++|+-|. +.+-+.|. ++....++|. T Consensus 259 L~~~~~~~~~~l~~~g~~i~~~~~~~i~~~~~~~~~~a~~~~~~L~~~Gi~v~~~~~Ptvp~~~~~lRi~~sa~ht~edI 338 (349) T cd06454 259 LQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDI 338 (349) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHH T ss_conf 99999999999997699757999972799986999999999999988796286379897899983599986877999999 Q ss_pred HHHHHHHHHCC Q ss_conf 99999976321 Q gi|254781016|r 316 ETIKQFFPEIT 326 (355) Q Consensus 316 ~~i~~~l~~i~ 326 (355) +.+.+.|.+++ T Consensus 339 d~li~~l~ev~ 349 (349) T cd06454 339 DRLLEALKEVG 349 (349) T ss_pred HHHHHHHHHHC T ss_conf 99999999749 No 53 >TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process. Probab=56.23 E-value=16 Score=17.12 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 0550999999998099999999999999989998703899 Q gi|254781016|r 231 ISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASP 270 (355) Q Consensus 231 ~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P 270 (355) +++++.+|.+...++||++.-||=.+=.--|++++..++| T Consensus 209 ~P~~~~emv~~a~~G~~~~A~EIh~kL~~L~~~LF~etNP 248 (288) T TIGR00674 209 APKLMKEMVENALEGDFAEAREIHQKLMPLFKALFIETNP 248 (288) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 6899999999985389789999998788898875288898 No 54 >pfam10673 DUF2487 Protein of unknown function (DUF2487). This is a bacterial family of uncharacterized proteins. Probab=54.20 E-value=15 Score=17.31 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=26.3 Q ss_pred HHHCCCCCEEEECHHHHH-----HHHHHHHHHHCCC-E-EEEEEC-------CCCEEEEEEC Q ss_conf 870389956865788999-----9999999742896-1-999977-------7981799955 Q gi|254781016|r 264 TMIAASPPLLYWQKETIQ-----GMERVWDARQQSI-P-IYFTLD-------AGPNLKLLFT 311 (355) Q Consensus 264 ~~~~s~P~~~Y~~~~t~~-----ii~~v~~~R~~g~-~-v~fT~D-------AGPNv~il~~ 311 (355) +|+ .|||.|+..+..+ +=++..+++.+|. . +|.|.| .+-+-.++.. T Consensus 52 v~L--~P~ftY~~~~~~~~~~~rL~~w~~~l~~~Gf~HV~~vTsD~~Wk~~~~~~~~~l~wl 111 (143) T pfam10673 52 VLL--LPAFTYLASEQKDEAGERLKEWTNALKEEGFRHVFFLTSDSSWKEEEEELEGDLFWL 111 (143) T ss_pred EEE--CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCEEEEE T ss_conf 784--278031045666789999999999999759846999955713433114667608995 No 55 >PRK05912 tyrosyl-tRNA synthetase; Validated Probab=53.81 E-value=17 Score=16.85 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=47.8 Q ss_pred CEEEEEEECCCCCCCCCCHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 21589997287667521056798876185--6899997305509999999980999999999999 Q gi|254781016|r 194 LRIGLLKIIDREKKIGSREAMEITRHHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 194 l~~~i~iv~~~~K~vsSt~gm~~~v~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) +.+.++.-.++.|.-+.|.|--.-...|| ||+-|.....+++.+....+..-+.+++.++.+. T Consensus 213 lT~PLLt~~dG~K~gsKS~gnaIwLd~sp~~~yq~~~n~~D~dv~~ylklfT~l~~~eI~~l~~~ 277 (402) T PRK05912 213 LTMPLLTGLDGVKKMSKSLGNYIWLDESPYEMYQKWMNIPDALVWRYLELLTFLSLEEIAALEEE 277 (402) T ss_pred EEECCEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 98450577876843566799870178998999999963878899999999645999999999997 No 56 >KOG4520 consensus Probab=47.92 E-value=19 Score=16.51 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.8 Q ss_pred HCCCCCHHHHCCCCHHC Q ss_conf 21353034310562002 Q gi|254781016|r 155 LGSGSACRSFYRGFCEW 171 (355) Q Consensus 155 lGSGSA~RSi~GG~v~W 171 (355) ||-|+|.||+.++...= T Consensus 115 LG~Gnas~s~vh~~~~s 131 (238) T KOG4520 115 LGAGNASRSIVHSTSRS 131 (238) T ss_pred HCCCCCCCCHHCCCCCC T ss_conf 05776530121122103 No 57 >TIGR01122 ilvE_I branched-chain amino acid aminotransferase; InterPro: IPR005785 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process. Probab=45.75 E-value=9 Score=18.80 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=9.6 Q ss_pred CCCEEEEEECCCCEEEEEECHHHHHHHH Q ss_conf 8961999977798179995589899999 Q gi|254781016|r 292 QSIPIYFTLDAGPNLKLLFTHKIEETIK 319 (355) Q Consensus 292 ~g~~v~fT~DAGPNv~il~~~~~~~~i~ 319 (355) ||+.||=| |-||-| |-+++|.+++. T Consensus 29 EGiRaY~~-~~G~~I--FRl~EH~~RL~ 53 (302) T TIGR01122 29 EGIRAYDT-DKGPAI--FRLKEHVDRLY 53 (302) T ss_pred EEEEEECC-CCCCEE--EEHHHHHHHHH T ss_conf 23887558-998888--83755588885 No 58 >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Probab=43.15 E-value=25 Score=15.74 Aligned_cols=96 Identities=22% Similarity=0.381 Sum_probs=53.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECC---------C---CEEEEEECHHH Q ss_conf 99999999999998999870389956865788999999999974289619999777---------9---81799955898 Q gi|254781016|r 247 FIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDA---------G---PNLKLLFTHKI 314 (355) Q Consensus 247 f~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DA---------G---PNv~il~~~~~ 314 (355) |-.+|++. ...+....-|++-+..+ .+.|+.+|+.|.++||= || | +.+.|++-.+. T Consensus 408 ~GR~Gq~v-------ar~L~~~gi~~vviD~d----~~~V~~~r~~G~~v~yG-Dat~~~vL~~AGi~~A~~vViai~d~ 475 (602) T PRK03659 408 FGRFGQVI-------GRLLMANKMRITVLERD----ISAVNLMRKYGYKVYYG-DATQLELLRAAGAEKAEAIVITCNEP 475 (602) T ss_pred CCHHHHHH-------HHHHHHCCCCEEEEECC----HHHHHHHHHCCCEEEEE-CCCCHHHHHHCCCCCCCEEEEEECCH T ss_conf 87568999-------99999789998999786----79999999789908975-89999999867904058899982989 Q ss_pred ------HHHHHHHHHHCCCCCCCC----------------CCCCCCCCCCCCCCCHHHHCCC Q ss_conf ------999999976321003688----------------8751200000243202320235 Q gi|254781016|r 315 ------EETIKQFFPEITIIDPLD----------------SPDLWSTKDSLSQKNSIELGIS 354 (355) Q Consensus 315 ------~~~i~~~l~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 354 (355) .+.+++.+|++.++.-.. -++.+++..++..+-+..+|++ T Consensus 476 ~~~~~iv~~~r~~~P~l~I~aRar~~~~~~~L~~~Ga~~vv~Et~essL~l~~~~L~~lG~~ 537 (602) T PRK03659 476 EDTMKLVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMH 537 (602) T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999878699699986978999999978999786627899999999999980999 No 59 >TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex. Probab=42.69 E-value=25 Score=15.70 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=65.1 Q ss_pred CCCCEEEEEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHH---HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 2781079999717888579987872566520689999997421---6761943999985023321101232247999999 Q gi|254781016|r 58 GHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLF---RQFSKVYFLIETSNNIPTKAGLASSASGFAALTL 134 (355) Q Consensus 58 ~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~~~~~ri~~~l~~~---r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~ 134 (355) +.|..+..++ .+..-|.+.+||-..+ -.+-|+..+|.+ +...++|++|--+=|. =|.++|-||-+ T Consensus 71 n~C~~C~~i~-~g~~~DviEiDAASN~----gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHM-------LS~~AFNALLK 138 (363) T TIGR02397 71 NECESCKEIN-SGSSLDVIEIDAASNN----GVDDIRELRENVKYAPSKGKYKVYIIDEVHM-------LSKSAFNALLK 138 (363) T ss_pred CCCCHHHHHH-CCCCCCEEEECCCCCC----CHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CCHHHHHHHHH T ss_conf 7750227765-2898666886486568----7889999987303687554433588732302-------86568999876 Q ss_pred HH-----------------------------------------------HHHHCCCCCHHHHHHHHHHCCCCC--HHHHC Q ss_conf 99-----------------------------------------------998188999889998865213530--34310 Q gi|254781016|r 135 AL-----------------------------------------------FRIYSIPEKSESLSRVARLGSGSA--CRSFY 165 (355) Q Consensus 135 Al-----------------------------------------------~~~~~~~~~~~~lS~lARlGSGSA--~RSi~ 165 (355) .| .+-.+...+.+-|..+||.+.||. +=|++ T Consensus 139 TLEEPP~hV~FIlATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsll 218 (363) T TIGR02397 139 TLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLL 218 (363) T ss_pred HHCCCCCCEEEEEECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHH T ss_conf 52279876288873487112055402100031267899899999999999870883177899999996289610688999 Q ss_pred CCCHHC Q ss_conf 562002 Q gi|254781016|r 166 RGFCEW 171 (355) Q Consensus 166 GG~v~W 171 (355) --.+.. T Consensus 219 DQ~~~~ 224 (363) T TIGR02397 219 DQAISF 224 (363) T ss_pred HHHHHH T ss_conf 999982 No 60 >TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase; InterPro: IPR016005 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type . This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.. Probab=41.68 E-value=19 Score=16.50 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=75.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCC------------CHHH-HHHHHH---------HCCC-CCHHHHCCCC--HHC- Q ss_conf 211012322479999999999818899------------9889-998865---------2135-3034310562--002- Q gi|254781016|r 118 TKAGLASSASGFAALTLALFRIYSIPE------------KSES-LSRVAR---------LGSG-SACRSFYRGF--CEW- 171 (355) Q Consensus 118 taaGLASSASgfAALa~Al~~~~~~~~------------~~~~-lS~lAR---------lGSG-SA~RSi~GG~--v~W- 171 (355) +--||+|||+=.-+|+.||..++.... +..+ +=+||. .||| --+-..||-. ++. T Consensus 178 ~KTGLGSSAam~T~l~~aL~~~l~~~~~~~~dK~~K~~~S~~~viH~lAQ~aHC~AQGKvGSGFDV~aA~yGS~rYrRF~ 257 (499) T TIGR01219 178 AKTGLGSSAAMVTALVAALLLYLRSVDEDDVDKELKIDDSDKEVIHNLAQVAHCSAQGKVGSGFDVAAAVYGSIRYRRFD 257 (499) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEECC T ss_conf 65676314899999999999986542045787343326750455554478888632785346323777643351144468 Q ss_pred ------CC-CCCCC-CCCEEE----EECCCCCCCCEEE-------EEEECCCCC-CCCCCHHHHHHHHHCHHHHHHHHHH Q ss_conf ------57-89876-544131----0156668642158-------999728766-7521056798876185689999730 Q gi|254781016|r 172 ------IC-GTDQN-GMDSFA----VPFNNQWPDLRIG-------LLKIIDREK-KIGSREAMEITRHHSPFFTQWTQQI 231 (355) Q Consensus 172 ------~~-g~~~~-~sds~a----~~~~~~~~dl~~~-------i~iv~~~~K-~vsSt~gm~~~v~tSp~y~~r~~~~ 231 (355) .. ..+.+ +.-.|. .-+...|.++.+. .++.=.+.+ --|||-+|-.-|+ ..|..-.+.+ T Consensus 258 P~lis~l~vPyd~~i~~~~~~~~l~~iv~~kw~Ni~~~~f~LP~~~~L~mGd~~sgGSsTp~mV~kVk--~Wq~s~pees 335 (499) T TIGR01219 258 PELISQLLVPYDVDIKSLTYSEKLAKIVKEKWDNIKVKEFSLPALLTLLMGDVKSGGSSTPKMVKKVK--KWQKSDPEES 335 (499) T ss_pred HHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHH--HHHCCCCHHH T ss_conf 79996416860131145753789998741235653010045762447550443788867367889997--1301583688 Q ss_pred HHHHHHHHHHH--HHCCHHHHHHHHHH Q ss_conf 55099999999--80999999999999 Q gi|254781016|r 232 STDLAHIKQAI--IDQDFIKLGEVAEK 256 (355) Q Consensus 232 ~~~~~~~~~ai--~~~Df~~l~~i~e~ 256 (355) .+.+.++..|- ....+.+|-++.+. T Consensus 336 ~~~~~~L~~aN~~l~~~L~~L~~L~~~ 362 (499) T TIGR01219 336 KEIYDDLDDANLRLEDKLSDLDKLAKD 362 (499) T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHH T ss_conf 986403666567887313477776520 No 61 >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234 These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.. Probab=41.68 E-value=19 Score=16.58 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=47.3 Q ss_pred EEEEECCCCCCCCEEEEEEECCCCCCC------------CCCHHHHHHHHH---------CHHHHHHHHH--HHHHHHHH Q ss_conf 131015666864215899972876675------------210567988761---------8568999973--05509999 Q gi|254781016|r 182 SFAVPFNNQWPDLRIGLLKIIDREKKI------------GSREAMEITRHH---------SPFFTQWTQQ--ISTDLAHI 238 (355) Q Consensus 182 s~a~~~~~~~~dl~~~i~iv~~~~K~v------------sSt~gm~~~v~t---------Sp~y~~r~~~--~~~~~~~~ 238 (355) ||+.|+-..-.+|...|+|- ..-|.| +|.+-|+.-|.. ||| ++|+-- .+---.+| T Consensus 177 ~f~tP~~qqPL~lGaDvvv~-SATK~IDGqGRvlGGv~~G~~e~~~~~v~~~lr~~GpalSpF-NAW~lLkGlETL~lR~ 254 (386) T TIGR01325 177 VFATPVLQQPLKLGADVVVY-SATKHIDGQGRVLGGVILGSEELMEEFVAKFLRHTGPALSPF-NAWVLLKGLETLSLRV 254 (386) T ss_pred HHHHHHHCCCCCCCCEEEEE-CCCEEECCCCCEECCEEECCHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHH T ss_conf 56410013886456407986-462011387540121453607775348999974257432367-8999850345789999 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH-CCCEEEEEECCCCE Q ss_conf 99998099999999999999989998703899568657889999999999742-89619999777981 Q gi|254781016|r 239 KQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ-QSIPIYFTLDAGPN 305 (355) Q Consensus 239 ~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~-~g~~v~fT~DAGPN 305 (355) +. .++.-..|+ +.++-|--...- .+-|+=++= --+.++.... .|+-+.|-+|.|-. T Consensus 255 ~~-----~~~sAl~lA--~~L~~~p~v~~V--~Y~~lP~HP--q~~lar~Q~~GGG~Vv~f~l~~~ed 311 (386) T TIGR01325 255 QK-----QADSALALA--EWLEEQPKVQAV--YYPGLPDHP--QHELARRQQSGGGTVVAFDLKGGED 311 (386) T ss_pred HH-----HHHHHHHHH--HHHHHCCCEEEE--ECCCCCCCC--CHHHHHHHCCCCCEEEEEECCCCHH T ss_conf 86-----147899999--999708955798--758787885--2689998418996799973268645 No 62 >PRK08745 ribulose-phosphate 3-epimerase; Provisional Probab=39.50 E-value=28 Score=15.37 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=43.7 Q ss_pred HHHHCCCCCEEE--ECHHHHHHHHHHHHHHH-CCCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 987038995686--57889999999999742-896199997779817999558989999999763210036888751200 Q gi|254781016|r 263 ATMIAASPPLLY--WQKETIQGMERVWDARQ-QSIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITIIDPLDSPDLWST 339 (355) Q Consensus 263 a~~~~s~P~~~Y--~~~~t~~ii~~v~~~R~-~g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~~~~~~~~~~~~~ 339 (355) -+.|+..|+|-- +.|.+++=|+.+++++. .+..+-.-.|.|=|. +.+.+... .|.|.++. T Consensus 136 VliMtV~PGf~GQ~f~~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~---------~ti~~l~~--------aGad~~V~ 198 (223) T PRK08745 136 VLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKA---------DNIGAIAA--------AGADTFVA 198 (223) T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH---------HHHHHHHH--------CCCCEEEE T ss_conf 99987569988754568899999999999986499945999788798---------99999998--------69999997 Q ss_pred CCCCCCCCHHHHCC Q ss_conf 00024320232023 Q gi|254781016|r 340 KDSLSQKNSIELGI 353 (355) Q Consensus 340 ~~~~~~~~~~~~~~ 353 (355) +.-+....+....| T Consensus 199 GSaiF~~~d~~~~i 212 (223) T PRK08745 199 GSAIFNAPDYAQVI 212 (223) T ss_pred CHHHHCCCCHHHHH T ss_conf 41775799999999 No 63 >PRK08883 ribulose-phosphate 3-epimerase; Provisional Probab=39.45 E-value=28 Score=15.36 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=29.8 Q ss_pred HHHCCCCCEEEE--CHHHHHHHHHHHHHHHC-CCEEEEEECCCCE Q ss_conf 870389956865--78899999999997428-9619999777981 Q gi|254781016|r 264 TMIAASPPLLYW--QKETIQGMERVWDARQQ-SIPIYFTLDAGPN 305 (355) Q Consensus 264 ~~~~s~P~~~Y~--~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPN 305 (355) +.|+..|+|--. .|.+++-|+.+++++.+ +..+-.-.|.|=| T Consensus 133 LvMtV~PGf~GQ~f~~~~l~Ki~~l~~~~~~~~~~~~I~VDGGI~ 177 (220) T PRK08883 133 LLMSVNPGFGGQSFIPHTLDKLRAVRKMIDASGRDIRLEIDGGVK 177 (220) T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 998745898875455779999999999887449980799989878 No 64 >pfam12017 Transposase_37 Transposase protein. Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with pfam05485. Probab=37.97 E-value=8.5 Score=18.98 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEEECCCCEEEEEECHHHHHHHHHHHHHCCC Q ss_conf 8899999999997428-96199997779817999558989999999763210 Q gi|254781016|r 277 KETIQGMERVWDARQQ-SIPIYFTLDAGPNLKLLFTHKIEETIKQFFPEITI 327 (355) Q Consensus 277 ~~t~~ii~~v~~~R~~-g~~v~fT~DAGPNv~il~~~~~~~~i~~~l~~i~~ 327 (355) |.+....-.|+-+++. .-|+||.||.. ...+....|...+.+++. T Consensus 165 pa~~vqv~mvrGl~~~WKQPI~y~f~t~------m~~~~L~~II~kL~~iG~ 210 (236) T pfam12017 165 PSNYVQLAIVRGLKKSWKQPVFFDFNTR------MDADTLNNIIRKLHKRGY 210 (236) T ss_pred CCCEEEEEEHHHHHHCCCCCEEEEECCC------CCHHHHHHHHHHHHHCCC T ss_conf 6655653002776506667579983687------899999999999998798 No 65 >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Probab=37.51 E-value=27 Score=15.42 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 0550999999998099999999999 Q gi|254781016|r 231 ISTDLAHIKQAIIDQDFIKLGEVAE 255 (355) Q Consensus 231 ~~~~~~~~~~ai~~~Df~~l~~i~e 255 (355) ...++..+.++|++.|.+.+.++.. T Consensus 884 ~gk~~~~v~~~i~~~~~~~i~~~~~ 908 (1042) T PRK06039 884 LGKDVKAVIKAIKSGDWEEIADLLK 908 (1042) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 6488999999998089999999996 No 66 >PRK05581 ribulose-phosphate 3-epimerase; Validated Probab=37.15 E-value=30 Score=15.12 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=32.1 Q ss_pred HHHHCCCCCEEE--ECHHHHHHHHHHHHHHHC-CCEEEEEECCCCEE Q ss_conf 987038995686--578899999999997428-96199997779817 Q gi|254781016|r 263 ATMIAASPPLLY--WQKETIQGMERVWDARQQ-SIPIYFTLDAGPNL 306 (355) Q Consensus 263 a~~~~s~P~~~Y--~~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPNv 306 (355) -+.|+..|+|.- +.|.+++=++.+++++.+ +..+-.-.|.|=|- T Consensus 135 VlvMtV~PGf~GQ~f~~~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~ 181 (220) T PRK05581 135 VLLMSVNPGFGGQKFIPEVLEKIREVRKLIDERGLDILIEVDGGVNA 181 (220) T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH T ss_conf 58998658878764556699999999999984599755999789898 No 67 >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Probab=36.91 E-value=30 Score=15.09 Aligned_cols=86 Identities=14% Similarity=0.300 Sum_probs=46.8 Q ss_pred HHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECC---------C---CEEEEEECHHH------HHHHHHHHHHC Q ss_conf 870389956865788999999999974289619999777---------9---81799955898------99999997632 Q gi|254781016|r 264 TMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDA---------G---PNLKLLFTHKI------EETIKQFFPEI 325 (355) Q Consensus 264 ~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DA---------G---PNv~il~~~~~------~~~i~~~l~~i 325 (355) .+....-|++-+..+ -+.|+..|+.|.++||= || | +.+.|++-.+. .+.+++.+|++ T Consensus 417 ~L~~~gi~~vviD~d----~~~V~~~r~~G~~v~yG-Dat~~~vL~~AGi~~Ar~vViaidd~~~~~~iv~~~r~~~P~l 491 (615) T PRK03562 417 LLLSSGVKMVVLDHD----PDHIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINAIDDPQTNLQLTELVKEHFPHL 491 (615) T ss_pred HHHHCCCCEEEEECC----HHHHHHHHHCCCEEEEE-CCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC T ss_conf 999789987999799----99999999679908976-8999999986791406889999498999999999999758998 Q ss_pred CCCCCCCC----------------CCCCCCCCCCCCCCHHHHCCC Q ss_conf 10036888----------------751200000243202320235 Q gi|254781016|r 326 TIIDPLDS----------------PDLWSTKDSLSQKNSIELGIS 354 (355) Q Consensus 326 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 354 (355) .++.-... ++.++...++..+-+..+|++ T Consensus 492 ~IiaRard~~~~~~L~~~Ga~~vv~Et~essL~l~~~~L~~lG~~ 536 (615) T PRK03562 492 QIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLALESLGLG 536 (615) T ss_pred EEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCC T ss_conf 699983977889999978999896665899999999999980999 No 68 >KOG4743 consensus Probab=35.66 E-value=12 Score=17.85 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=6.7 Q ss_pred CCCHHHHCCCC Q ss_conf 53034310562 Q gi|254781016|r 158 GSACRSFYRGF 168 (355) Q Consensus 158 GSA~RSi~GG~ 168 (355) -||||++||.- T Consensus 16 ~sAcR~LFGpv 26 (195) T KOG4743 16 SSACRCLFGPV 26 (195) T ss_pred CHHHHHHCCCC T ss_conf 05778744899 No 69 >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Probab=34.47 E-value=29 Score=15.21 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=24.0 Q ss_pred HHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEE Q ss_conf 8703899568657889999999999742896199997779817 Q gi|254781016|r 264 TMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNL 306 (355) Q Consensus 264 ~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv 306 (355) +.|+..|+|-- ++---.++++|+++|+.....-.-.|.|=|. T Consensus 140 LlMsV~PGf~G-Q~Fi~~~l~KI~~lr~~~~~~~I~VDGGIn~ 181 (224) T PTZ00170 140 LVMTVEPGFGG-QSFMHDMMPKVRQLRQRYPHLNIQVDGGINP 181 (224) T ss_pred EEEEECCCCCC-CCCCHHHHHHHHHHHHCCCCCEEEEECCCCH T ss_conf 99855699876-2145889999999985489975999589998 No 70 >PRK12864 YciI-like protein; Reviewed Probab=33.33 E-value=35 Score=14.71 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCCEEE-EEECCCCEEEEEECHHHHHHHHHHHHHC Q ss_conf 999999742896199-9977798179995589899999997632 Q gi|254781016|r 283 MERVWDARQQSIPIY-FTLDAGPNLKLLFTHKIEETIKQFFPEI 325 (355) Q Consensus 283 i~~v~~~R~~g~~v~-fT~DAGPNv~il~~~~~~~~i~~~l~~i 325 (355) +..++.+.++|..+. --...++.+.+++.-++.+.+++++.+- T Consensus 26 la~l~~l~~~G~lv~aGP~~~~~g~~~I~~a~s~e~v~~~~~~D 69 (89) T PRK12864 26 LDRLANLKEQGILITLGPTKDSTYVFGIFEAEDEETVRQLIEED 69 (89) T ss_pred HHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHCC T ss_conf 99999998779789847899987669999809999999998649 No 71 >TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase; InterPro: IPR000766 Galactose-1-phosphate uridyl transferase 2.7.7.12 from EC (galT) catalyzes the transfer of an uridyldiphosphate group on galactose (or glucose) 1-phosphate. During the reaction, the uridyl moiety links to a histidine residue. In the Escherichia coli enzyme, it has been shown that two histidine residues separated by a single proline residue are essential for enzyme activity. On the basis of sequence similarities, two apparently unrelated families seem to exist. Class-I enzymes are found in eukaryotes as well as some bacteria such as E. coli or Streptomyces lividans, while class-II enzymes have been found so far only in bacteria such as Bacillus subtilis or Lactobacillus helveticus .; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process, 0005737 cytoplasm. Probab=33.05 E-value=20 Score=16.36 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=36.3 Q ss_pred EECC---CCCCEEEECCE--ECCCCCHHHHHHHHHHHHHHHH-----CCCEE---EEEEECCCCC Q ss_conf 9717---88857998787--2566520689999997421676-----19439---9998502332 Q gi|254781016|r 67 TVID---SDADCIILNGQ--KISSQSSFFKKTTQFCDLFRQF-----SKVYF---LIETSNNIPT 118 (355) Q Consensus 67 ~~~~---~~~d~~~lnG~--~~~~~~~~~~ri~~~l~~~r~~-----~~~~~---~I~S~N~fPt 118 (355) .|+| -.++.++|+|+ ++.+..+-|.|..+|++.|+.+ +++++ -|=|.|+|-+ T Consensus 209 QfSPYaYF~EHSI~L~~~HePM~I~k~tF~~LL~fl~~FP~Yf~GSNADLPIVGGsILsHdHYQ~ 273 (502) T TIGR01239 209 QFSPYAYFPEHSIVLKGKHEPMEISKKTFERLLSFLEKFPHYFIGSNADLPIVGGSILSHDHYQG 273 (502) T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCC T ss_conf 35872324602331026889853284768889989752587502145666655772156344468 No 72 >cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl. Probab=32.77 E-value=34 Score=14.77 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=35.7 Q ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 856899997305509-------999999980999999999999999899987038 Q gi|254781016|r 221 SPFFTQWTQQISTDL-------AHIKQAIIDQDFIKLGEVAEKNALKMHATMIAA 268 (355) Q Consensus 221 Sp~y~~r~~~~~~~~-------~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s 268 (355) -|-...|+...++.+ .+=++|+.++||..+.-+--+--++||=.|++- T Consensus 16 ~p~~~e~~~~dp~av~e~y~Lt~~E~~AL~eg~~gaL~~iGVhp~l~MHy~m~~n 70 (81) T cd07922 16 DPGLIERFQDDPSAVFEEYGLTPAERAALREGTFGALTSIGVHPILQMHYLMYTN 70 (81) T ss_pred CHHHHHHHHHCHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCC T ss_conf 9888999874989987752899899999863886467736736999999999819 No 73 >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Probab=32.60 E-value=35 Score=14.63 Aligned_cols=19 Identities=16% Similarity=-0.067 Sum_probs=9.4 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 0123224799999999998 Q gi|254781016|r 121 GLASSASGFAALTLALFRI 139 (355) Q Consensus 121 GLASSASgfAALa~Al~~~ 139 (355) .++..+|-...||..+.+- T Consensus 185 vI~~tps~~l~lae~~~~~ 203 (438) T COG1541 185 VIAATPSYLLYLAEEAEEE 203 (438) T ss_pred EEEECHHHHHHHHHHHHHC T ss_conf 9997869999999999974 No 74 >PRK13193 pyrrolidone-carboxylate peptidase; Provisional Probab=32.33 E-value=25 Score=15.67 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=24.4 Q ss_pred EEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE Q ss_conf 86578899999999997428961999977798179 Q gi|254781016|r 273 LYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLK 307 (355) Q Consensus 273 ~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~ 307 (355) -|+ .|+-+-..++.+|+.|+++..+-|||--|+ T Consensus 110 ay~--stLPi~~i~~~l~~~Gipa~vS~~AGtyvC 142 (201) T PRK13193 110 GIF--TNIPVEDLVDLLNENGIPAELSLSAGSYLC 142 (201) T ss_pred CCC--CCCCHHHHHHHHHHCCCCEEEECCCCCCHH T ss_conf 144--578999999999867998799588653141 No 75 >KOG3282 consensus Probab=32.02 E-value=36 Score=14.57 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=33.0 Q ss_pred CCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEEECCCCE Q ss_conf 389956865788999999999974289619999777981 Q gi|254781016|r 267 AASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPN 305 (355) Q Consensus 267 ~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPN 305 (355) ...|-+..--+.+.+++....+-++.|.+.|++.|||-+ T Consensus 122 ~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrT 160 (190) T KOG3282 122 CGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRT 160 (190) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 699349997188899999999998769858999718842 No 76 >TIGR03266 methan_mark_1 putative methanogenesis marker protein 1. Members of this protein family represent a distinct clade among the larger set of proteins that belong to families TIGR00702 and pfam02624. Proteins from this clade are found in genome sequence if and only if the species sequenced is one of the methanogens. All methanogens belong to the archaea; some but not all of those sequenced are hyperthermophiles. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). Probab=31.97 E-value=36 Score=14.56 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999899 Q gi|254781016|r 247 FIKLGEVAEKNALKMH 262 (355) Q Consensus 247 f~~l~~i~e~dal~mH 262 (355) +..|.|++|+|+..+- T Consensus 167 l~GL~EvIERDA~~l~ 182 (376) T TIGR03266 167 FHGLLEVIERDAWSLA 182 (376) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999998999 No 77 >TIGR03604 docking_ocin bacteriocin biosynthesis docking scaffold, SagD family. prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Probab=31.94 E-value=36 Score=14.56 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=21.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 233211012322479999999999818 Q gi|254781016|r 115 NIPTKAGLASSASGFAALTLALFRIYS 141 (355) Q Consensus 115 ~fPtaaGLASSASgfAALa~Al~~~~~ 141 (355) ...++.|||+-.+---|+.-++.++.. T Consensus 109 ~~~~SnGlAaG~t~~eA~~~gL~EviE 135 (377) T TIGR03604 109 VPSTSTGLAAGETLEEAILNGLLEVIE 135 (377) T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 246787168889999999999999999 No 78 >PRK00068 hypothetical protein; Validated Probab=31.82 E-value=37 Score=14.55 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=21.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 899997305509999999980999999999999 Q gi|254781016|r 224 FTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 224 y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) ..+-++++.+.+.++.+|++++||.++|+..++ T Consensus 934 ~~~~l~~A~~a~~~a~~Alk~GDw~~yG~a~~~ 966 (978) T PRK00068 934 KAAALKEAQDAYNKAIEAQKNGDFAEYGEALQR 966 (978) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999999999998875999999999999 No 79 >pfam04788 DUF620 Protein of unknown function (DUF620). Family of uncharacterized proteins. Probab=31.60 E-value=9.8 Score=18.54 Aligned_cols=63 Identities=16% Similarity=0.330 Sum_probs=36.9 Q ss_pred CCCHHHHCCCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHH-HH Q ss_conf 53034310562002578987654413101566686421589997287667521056798876185689999730550-99 Q gi|254781016|r 158 GSACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTD-LA 236 (355) Q Consensus 158 GSA~RSi~GG~v~W~~g~~~~~sds~a~~~~~~~~dl~~~i~iv~~~~K~vsSt~gm~~~v~tSp~y~~r~~~~~~~-~~ 236 (355) +....+--||||+|++.+ +.| .+=++| .+.|-+.-++| +....++|....-...-+.+ +. T Consensus 24 ~~~~~~e~GgFVlWQ~~P-------------d~W----~~ELvv-~G~KV~AGsdG-kv~WR~tpw~~~hAakGp~RPLR 84 (242) T pfam04788 24 GGGGGGESGGFVLWQMNP-------------DMW----LVELVV-GGTKVSAGSDG-KVAWRHTPWLGAHAAKGPPRPLR 84 (242) T ss_pred CCCCCCCCCCEEEEEECC-------------CEE----EEEEEE-CCEEEEECCCC-EEEEECCCCCCCCCCCCCCCCHH T ss_conf 888765445479998677-------------758----999985-22278644787-05631286543510248996267 Q ss_pred HHH Q ss_conf 999 Q gi|254781016|r 237 HIK 239 (355) Q Consensus 237 ~~~ 239 (355) +.. T Consensus 85 R~l 87 (242) T pfam04788 85 RAL 87 (242) T ss_pred HHH T ss_conf 886 No 80 >TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process. Probab=31.60 E-value=37 Score=14.52 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=86.6 Q ss_pred CCCCEEEEEEECCCCCC-CCCCHHHHHHHHHCHHHHHHHHHH-----------HHHHHHHHHHHHHCCHH---------- Q ss_conf 86421589997287667-521056798876185689999730-----------55099999999809999---------- Q gi|254781016|r 191 WPDLRIGLLKIIDREKK-IGSREAMEITRHHSPFFTQWTQQI-----------STDLAHIKQAIIDQDFI---------- 248 (355) Q Consensus 191 ~~dl~~~i~iv~~~~K~-vsSt~gm~~~v~tSp~y~~r~~~~-----------~~~~~~~~~ai~~~Df~---------- 248 (355) -|++.+...|+..=+|- ..=.--=|++++.-..|=..+.++ ..++.++.+-||+--.+ T Consensus 39 VPNlT~Gp~v~~~~r~~g~~~P~DVHLMv~~pd~~~~~Fa~aGA~~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TP 118 (216) T TIGR01163 39 VPNLTFGPPVLEALRKYGTKLPIDVHLMVENPDRYIEDFAEAGADIITVHAEATEHIHRLLQLIKELGAKAGIVLNPATP 118 (216) T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 77100277899988740795212663035785777889997089989984377626799999999718970688679999 Q ss_pred --HHHHHHHHHHHHHHHHHHCCCCCEEEEC--HHHHHHHHHHHHHHH--C-CCEEEEEECCCCEEEEEECHHHHHHHHHH Q ss_conf --9999999999989998703899568657--889999999999742--8-96199997779817999558989999999 Q gi|254781016|r 249 --KLGEVAEKNALKMHATMIAASPPLLYWQ--KETIQGMERVWDARQ--Q-SIPIYFTLDAGPNLKLLFTHKIEETIKQF 321 (355) Q Consensus 249 --~l~~i~e~dal~mHa~~~~s~P~~~Y~~--~~t~~ii~~v~~~R~--~-g~~v~fT~DAGPNv~il~~~~~~~~i~~~ 321 (355) .+-.+-+. .=-=+.|+-+|+|-=.+ |.|++=|+.+|++.+ + +..+.--.|.|=|. +....+. T Consensus 119 l~~~~~~L~~---~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~~------~ni~~~~-- 187 (216) T TIGR01163 119 LEALEYVLED---VDLVLLMSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVNE------DNIAEVA-- 187 (216) T ss_pred HHHHHHHHHH---CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH------HHHHHHH-- T ss_conf 8789989876---2989988760799884110578999999999998602799558997179897------6799999-- Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCC--HHHHCCC Q ss_conf 76321003688875120000024320--2320235 Q gi|254781016|r 322 FPEITIIDPLDSPDLWSTKDSLSQKN--SIELGIS 354 (355) Q Consensus 322 l~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 354 (355) .+|-|.++.+.=...+. +++..|. T Consensus 188 ---------~AGAD~~VaGSaiF~~~s~d~~~~i~ 213 (216) T TIGR01163 188 ---------EAGADILVAGSAIFGADSLDYKEAIR 213 (216) T ss_pred ---------HCCCCEEEEEEEEECCCCCCHHHHHH T ss_conf ---------75898999831020888668799997 No 81 >pfam07014 Hs1pro-1_C Hs1pro-1 protein C-terminus. This family represents the C-terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance. Probab=31.28 E-value=37 Score=14.49 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=39.1 Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH---HH------HHHHHHHHH Q ss_conf 05679887618568999973055099999999809999999999---99------999899987 Q gi|254781016|r 211 REAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVA---EK------NALKMHATM 265 (355) Q Consensus 211 t~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~---e~------dal~mHa~~ 265 (355) .+.+-. -.++...+.|+..+..-+.++.+.|..+||++.+.-+ |+ +-..||-+| T Consensus 47 ~En~tl-~t~hQIlEsWi~~a~~LL~ri~~ri~~~~~ekAa~dC~~vERiWKLL~~ieDlhllM 109 (261) T pfam07014 47 YENQTL-YTIHQILESWIYASSKLLTRISERIEERKFEKAASDCWLLERIWKLLADIEDLHLLM 109 (261) T ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 230079-999999999999999999999999862556777656889999999999888998615 No 82 >TIGR02683 upstrm_HI1419 probable addiction module killer protein; InterPro: IPR014056 Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.. Probab=31.15 E-value=23 Score=15.93 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=38.3 Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHH---CCC Q ss_conf 76185689999730550999999998099999999999999989998703899568657889999999999742---896 Q gi|254781016|r 218 RHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ---QSI 294 (355) Q Consensus 218 v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~---~g~ 294 (355) +++.+.|..|++...+...... |. ..+..+..=| + -+..-|=+=|.|||- -|. T Consensus 3 ~~~t~~F~~Wl~~LKD~~Aka~--I~----~Ri~Rl~~Gn-------~-----------GD~KpVG~GV~ElRId~GpGY 58 (95) T TIGR02683 3 IKRTDTFDKWLDGLKDPRAKAR--IA----ARIDRLALGN-------F-----------GDVKPVGEGVSELRIDYGPGY 58 (95) T ss_pred CCCCHHHHHHHHHCCCHHHHHH--HH----HHHHHHHHCC-------C-----------CCEEECCCCEEEEEECCCCCE T ss_conf 5653247898773168889999--99----9999997388-------9-----------980033478035432269964 Q ss_pred EEEEEECCCCEEEEEE Q ss_conf 1999977798179995 Q gi|254781016|r 295 PIYFTLDAGPNLKLLF 310 (355) Q Consensus 295 ~v~fT~DAGPNv~il~ 310 (355) .|||+..-+-=|.||| T Consensus 59 RvYf~~~G~~~ilLLc 74 (95) T TIGR02683 59 RVYFTQRGKVIILLLC 74 (95) T ss_pred EEEEEEECCEEEEEEC T ss_conf 6887644888899851 No 83 >pfam01522 Polysacc_deac_1 Polysaccharide deacetylase. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan. Probab=31.09 E-value=37 Score=14.46 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=8.4 Q ss_pred CCEEEECHHHHHHHH Q ss_conf 956865788999999 Q gi|254781016|r 270 PPLLYWQKETIQGME 284 (355) Q Consensus 270 P~~~Y~~~~t~~ii~ 284 (355) ||+-.+++.++++++ T Consensus 102 ~P~G~~~~~~~~~~~ 116 (123) T pfam01522 102 PPYGSYNDDTLAIAK 116 (123) T ss_pred CCCCCCCHHHHHHHH T ss_conf 998787999999999 No 84 >PRK06606 branched-chain amino acid aminotransferase; Validated Probab=30.75 E-value=30 Score=15.13 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=20.0 Q ss_pred CCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 885799878725665206899999974216761943999985023 Q gi|254781016|r 72 DADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNI 116 (355) Q Consensus 72 ~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~~~~I~S~N~f 116 (355) ..--+|+||+..+.++. +|.-+=+-+.--.+.+=.++..|+- T Consensus 5 ~~~~v~~NG~~v~~~~a---~Isv~Drg~~yGdgvFEtir~y~~~ 46 (306) T PRK06606 5 RAGYIWFNGELVPWEDA---KVHVLTHALHYGTGVFEGIRAYDTP 46 (306) T ss_pred CCCEEEECCEEEEHHHC---EECHHHHHHHHEEEEEEEEEEEECC T ss_conf 68769999999686887---4070021455432767647999868 No 85 >pfam06434 Aconitase_2_N Aconitate hydratase 2 N-terminus. This family represents the N-terminal region of several bacterial Aconitate hydratase 2 proteins and is found in conjunction with pfam00330. Probab=30.67 E-value=32 Score=14.91 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=13.2 Q ss_pred HCCCCCHHHHCCCCHHCCCCCCC Q ss_conf 21353034310562002578987 Q gi|254781016|r 155 LGSGSACRSFYRGFCEWICGTDQ 177 (355) Q Consensus 155 lGSGSA~RSi~GG~v~W~~g~~~ 177 (355) .|-||.-.|-..-. +|+.|.+. T Consensus 63 vGtGSSRkSa~Nsv-LW~~g~di 84 (204) T pfam06434 63 VGTGSSRKSATNSV-LWHIGEDI 84 (204) T ss_pred CCCCCCCCCCEEEE-EEECCCCC T ss_conf 25675642110025-65156888 No 86 >KOG3262 consensus Probab=30.64 E-value=38 Score=14.41 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=36.8 Q ss_pred HHHHHCCCCCCCCCEEE------ECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCE Q ss_conf 88740346787763789------7488424881167767011757898434681278107999971788857998787 Q gi|254781016|r 10 HRYIGECNPKINEKSSA------FLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQ 81 (355) Q Consensus 10 ~~~~~~~~~~~~~~~ta------~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~ 81 (355) -+|+-.|-..++-+.++ -||+-.+=-+--||-||.+--+-....|+.+++---.| +-.+.|+||++.. T Consensus 57 g~flh~Cegd~Vck~~~~kIPyfNAPIylenk~qIGKVDEIfG~i~d~~fsIK~~dgv~as----sfk~g~k~fi~p~ 130 (215) T KOG3262 57 GKFLHMCEGDLVCKLTNKKIPYFNAPIYLENKEQIGKVDEIFGPINDVHFSIKPSDGVQAS----SFKPGDKLFIDPD 130 (215) T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCEEECCHHHHCCHHHHCCCCCCCEEEEECCCCCEEE----CCCCCCEEEECCC T ss_conf 3455433775587503566777888512116302131665306633117988537882651----1467885775602 No 87 >KOG0616 consensus Probab=30.05 E-value=35 Score=14.67 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=46.3 Q ss_pred EEEECCCC-CCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC Q ss_conf 99972876-67521056798876185689999730550999999998099999999999999989998703899568657 Q gi|254781016|r 198 LLKIIDRE-KKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQ 276 (355) Q Consensus 198 i~iv~~~~-K~vsSt~gm~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~Y~~ 276 (355) |-++|.+- |+|+-+ -+-.|- |-.|... .+...+..-+.-||+.||-++-. |+...|||.-++ T Consensus 183 iKitDFGFAK~v~~r-T~TlCG-TPeYLAP-------Eii~sk~ynkavDWWalGVLIYE--------MlaG~pPF~~~~ 245 (355) T KOG0616 183 IKITDFGFAKRVSGR-TWTLCG-TPEYLAP-------EIIQSKGYNKAVDWWALGVLIYE--------MLAGYPPFYDDN 245 (355) T ss_pred EEEEECCCEEEECCC-EEEECC-CCCCCCH-------HHHHCCCCCCCHHHHHHHHHHHH--------HHCCCCCCCCCC T ss_conf 788743634885686-787428-8100372-------66505888850258888899999--------972799876787 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 88999999999974289619999777 Q gi|254781016|r 277 KETIQGMERVWDARQQSIPIYFTLDA 302 (355) Q Consensus 277 ~~t~~ii~~v~~~R~~g~~v~fT~DA 302 (355) + +++-+.|-+-+- ..|-||+.|| T Consensus 246 ~--~~iY~KI~~~~v-~fP~~fs~~~ 268 (355) T KOG0616 246 P--IQIYEKILEGKV-KFPSYFSSDA 268 (355) T ss_pred H--HHHHHHHHHCCC-CCCCCCCHHH T ss_conf 6--899999981776-6886568789 No 88 >PRK13354 tyrosyl-tRNA synthetase; Provisional Probab=29.34 E-value=40 Score=14.26 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=47.2 Q ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 1589997287667521056798876185--6899997305509999999980999999999999 Q gi|254781016|r 195 RIGLLKIIDREKKIGSREAMEITRHHSP--FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 195 ~~~i~iv~~~~K~vsSt~gm~~~v~tSp--~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) .+.++.-.++.+|.+-|.|--.-...|| ||+-|.....+++.+....+..-+.+++.++.+. T Consensus 218 T~PLL~~~dG~~KmgKS~gnaIwLd~sp~~~yq~~~n~~D~~v~~yl~l~T~l~~eeI~~l~~~ 281 (405) T PRK13354 218 TMPLLEGLDGTEKMSKSLGNYIGLDESPNEFYQKWMSIPDRDIVKYLELATDLHPEEIDEIAAQ 281 (405) T ss_pred EECCEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 6061578877553250127863147988999999972655889999999666999999999998 No 89 >PRK13195 pyrrolidone-carboxylate peptidase; Provisional Probab=28.50 E-value=32 Score=14.98 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=12.4 Q ss_pred HHHHHHHHHCCCEEEEEECCCCEE Q ss_conf 999999742896199997779817 Q gi|254781016|r 283 MERVWDARQQSIPIYFTLDAGPNL 306 (355) Q Consensus 283 i~~v~~~R~~g~~v~fT~DAGPNv 306 (355) -..++.+|+.|+|+..+.+||.=| T Consensus 122 k~iv~~l~~~GIPa~vS~tAGTyV 145 (222) T PRK13195 122 RAMVLAMRKAGVPADVSDAAGTFV 145 (222) T ss_pred HHHHHHHHHCCCCEEEECCCCCCH T ss_conf 999999997799726844764004 No 90 >pfam11159 DUF2939 Protein of unknown function (DUF2939). This bacterial family of proteins has no known function. Probab=26.14 E-value=45 Score=13.89 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=23.6 Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 618568999973055099999999809999999999999998 Q gi|254781016|r 219 HHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALK 260 (355) Q Consensus 219 ~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~dal~ 260 (355) -.|||+ -+-.+++|+.++|-.++.+.++-.+++ T Consensus 10 ~asPy~---------al~~l~~Ai~~~D~~~l~~~VDfpalR 42 (95) T pfam11159 10 AASPYL---------ALYQLKQAARANDAAALSEYVDFPALR 42 (95) T ss_pred HHHHHH---------HHHHHHHHHHHCCHHHHHHHCCCHHHH T ss_conf 987999---------999999999964899999877829999 No 91 >PRK08005 ribulose-phosphate 3-epimerase; Validated Probab=25.87 E-value=38 Score=14.43 Aligned_cols=21 Identities=5% Similarity=0.074 Sum_probs=10.2 Q ss_pred CCCCCCCCCCCCCCCHHHHCC Q ss_conf 875120000024320232023 Q gi|254781016|r 333 SPDLWSTKDSLSQKNSIELGI 353 (355) Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~ 353 (355) |.|..+.+.-+...+++...| T Consensus 184 Gad~~V~GSaiF~~~d~~~~i 204 (210) T PRK08005 184 GAQHLVIGRALFTTANYDVTL 204 (210) T ss_pred CCCEEEECHHHHCCCCHHHHH T ss_conf 999999790653699999999 No 92 >COG4012 Uncharacterized protein conserved in archaea [Function unknown] Probab=25.71 E-value=43 Score=14.04 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=10.3 Q ss_pred CCCEEEEEECCCCEEEEEEC Q ss_conf 89619999777981799955 Q gi|254781016|r 292 QSIPIYFTLDAGPNLKLLFT 311 (355) Q Consensus 292 ~g~~v~fT~DAGPNv~il~~ 311 (355) +|.-.++.+|-+ -++-++. T Consensus 236 ngHttaalvded-RI~gv~E 254 (342) T COG4012 236 NGHTTAALVDED-RIVGVYE 254 (342) T ss_pred CCCEEEEEECCC-EEEEEEE T ss_conf 872578885177-1798732 No 93 >cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction. Probab=25.53 E-value=46 Score=13.81 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=18.8 Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 8999870389956865788999999999974289619999 Q gi|254781016|r 260 KMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFT 299 (355) Q Consensus 260 ~mHa~~~~s~P~~~Y~~~~t~~ii~~v~~~R~~g~~v~fT 299 (355) -|||.+|-..+ .+ ..+..+.+++.+|.++.|- T Consensus 25 pLHa~aMlk~~-----~~---~~~~~i~~lk~~g~~~~~v 56 (131) T cd01576 25 PLHALAMLKNK-----RE---GEIVAIAQLKPKGHPVAYV 56 (131) T ss_pred HHHHHHHHCCC-----CC---CHHHHHHHHHHCCCEEEEE T ss_conf 45899862054-----34---1789999996649838998 No 94 >PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed Probab=25.09 E-value=17 Score=16.86 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=12.0 Q ss_pred CHHHHHHHHHHHHHCCCCCCC Q ss_conf 589899999997632100368 Q gi|254781016|r 311 THKIEETIKQFFPEITIIDPL 331 (355) Q Consensus 311 ~~~~~~~i~~~l~~i~~~~~~ 331 (355) .++....|++.+++..+..|. T Consensus 197 ~p~~~~~ir~~~p~~~~LiPG 217 (277) T PRK00125 197 FPPELAAVRKIVGDMPLLIPG 217 (277) T ss_pred CHHHHHHHHHHCCCCEEEECC T ss_conf 647789999867997598256 No 95 >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase; InterPro: IPR005771 Uridine 5'-triphosphate:glucose-1-phosphate uridylyltransferase (uridine diphosphoglucose pyrophosphorylase, 2.7.7.9 from EC) is responsible for the synthesis of UDP-glucose, a key compound in the biosynthesis of polysaccharides. Glucose is fermented through the glycolysis step to pyruvate, which in turn is converted to lactate. The glycolytic intermediate glucose 6-phosphate is converted to glucose 1-phosphate by phosphoglucomutase activity, and this metabolite is subsequently converted to UDP-glucose by UDP-glucose pyrophosphorylase (GalU) activity. ; GO: 0003983 UTP:glucose-1-phosphate uridylyltransferase activity, 0006011 UDP-glucose metabolic process. Probab=24.15 E-value=31 Score=15.06 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=16.2 Q ss_pred HHHHHHHHHHCCC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9997421676194---39999850233211012322479999999999818 Q gi|254781016|r 94 TQFCDLFRQFSKV---YFLIETSNNIPTKAGLASSASGFAALTLALFRIYS 141 (355) Q Consensus 94 ~~~l~~~r~~~~~---~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~ 141 (355) .+.|+.+|+.... .++||=.+ ..||+= .++|...+-| T Consensus 81 ~~lL~~v~~I~~~~~~i~yvRQke----~kGLGh-------AvL~a~~~vG 120 (270) T TIGR01099 81 EELLKEVRKISNLNANIFYVRQKE----QKGLGH-------AVLCARPLVG 120 (270) T ss_pred HHHHHHHHHHCCCCCCEEEEECCC----CCCCCH-------HHHHCCCCCC T ss_conf 889999998626997289981388----885512-------7543521258 No 96 >COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism] Probab=23.71 E-value=32 Score=14.97 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCE-------EE---EEECHH----HHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 8999999999974289619999777981-------79---995589----899999997632100368887512000 Q gi|254781016|r 278 ETIQGMERVWDARQQSIPIYFTLDAGPN-------LK---LLFTHK----IEETIKQFFPEITIIDPLDSPDLWSTK 340 (355) Q Consensus 278 ~t~~ii~~v~~~R~~g~~v~fT~DAGPN-------v~---il~~~~----~~~~i~~~l~~i~~~~~~~~~~~~~~~ 340 (355) .--++++.+++..+-|+..| -+|-|=- -. =++..+ -.|.+.+.+.+.+. -+++|.-+ T Consensus 307 t~e~ile~vk~akk~gvE~F-vlDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl-----~fGIWleP 377 (687) T COG3345 307 TEEEILENVKEAKKFGVELF-VLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGL-----IFGIWLEP 377 (687) T ss_pred CHHHHHHHHHHHHHCCEEEE-EECCCCCCCCCCCHHHHHCEECCHHHCCCCHHHHHHHHHHCCC-----CCCEEECC T ss_conf 89999999998863682799-9735001566763123321143364355208999999997287-----64055062 No 97 >COG3603 Uncharacterized conserved protein [Function unknown] Probab=23.46 E-value=51 Score=13.55 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=33.4 Q ss_pred HHHHHHHCCCEEEE--EECCCCEEEEEECHHHHHHHHHHHHHCCCCC Q ss_conf 99997428961999--9777981799955898999999976321003 Q gi|254781016|r 285 RVWDARQQSIPIYF--TLDAGPNLKLLFTHKIEETIKQFFPEITIID 329 (355) Q Consensus 285 ~v~~~R~~g~~v~f--T~DAGPNv~il~~~~~~~~i~~~l~~i~~~~ 329 (355) -++-++.+|+++|. |+|+- |||..++++++-.+.|.+.+.-+ T Consensus 83 V~~pLsd~gigIFavStydtD---hiLVr~~dLekAv~~L~eaGhev 126 (128) T COG3603 83 VSQPLSDNGIGIFAVSTYDTD---HILVREEDLEKAVKALEEAGHEV 126 (128) T ss_pred HHHHHHHCCCCEEEEEECCCC---EEEEEHHHHHHHHHHHHHCCCCC T ss_conf 544576579527999712574---69983455999999999708711 No 98 >pfam12187 VirArc_Nuclease Viral/Archaeal nuclease. This family of proteins is found in archaea and viruses. Proteins in this family are typically between 211 and 244 amino acids in length. These proteins are nucleases from fusseloviruses and sulfolobus archaea. Probab=22.26 E-value=31 Score=15.08 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHH--HCCC--EEEEEECCCCEEEEEE Q ss_conf 88999999999974--2896--1999977798179995 Q gi|254781016|r 277 KETIQGMERVWDAR--QQSI--PIYFTLDAGPNLKLLF 310 (355) Q Consensus 277 ~~t~~ii~~v~~~R--~~g~--~v~fT~DAGPNv~il~ 310 (355) ++-+.+|...+-++ ++|. +--|-.||+.--.++- T Consensus 141 EdKlk~i~alqilnLekqgkik~d~fE~~aks~yylIP 178 (190) T pfam12187 141 EDKLKCISALQILNLEKQGKIKKDEFERDAKSRYYIIP 178 (190) T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEE T ss_conf 67665658888753664386111023236766079968 No 99 >PRK13194 pyrrolidone-carboxylate peptidase; Provisional Probab=22.21 E-value=43 Score=14.05 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=20.7 Q ss_pred EEECHHHHHHHHHHHHHHHCCCEEEEEECCCCEEE Q ss_conf 86578899999999997428961999977798179 Q gi|254781016|r 273 LYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLK 307 (355) Q Consensus 273 ~Y~~~~t~~ii~~v~~~R~~g~~v~fT~DAGPNv~ 307 (355) -|++ |+-+-..+..+|+.|+++-.+.|||--|+ T Consensus 110 ay~s--tlP~~~i~~~l~~~gipa~vS~~AGtyvC 142 (204) T PRK13194 110 AYFA--TIPTREIVEEMKENGIPAVLSYTAGTYLC 142 (204) T ss_pred CCCC--CCCHHHHHHHHHHCCCCEEEECCCCCCHH T ss_conf 0017--89999999999976998178478752163 No 100 >PRK12514 RNA polymerase sigma factor; Provisional Probab=22.16 E-value=54 Score=13.38 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 09999999980999999999999999899 Q gi|254781016|r 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMH 262 (355) Q Consensus 234 ~~~~~~~ai~~~Df~~l~~i~e~dal~mH 262 (355) +...++..+++||-+.|.++.+.-.-.+. T Consensus 5 d~~~Li~~~~~GD~~Af~~L~~~y~~~l~ 33 (179) T PRK12514 5 DIEKLIVRVSLGDRDAFSSLYDATSAKLF 33 (179) T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 09999999996589999999999999999 No 101 >pfam11101 DUF2884 Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function. Probab=21.76 E-value=55 Score=13.32 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=49.3 Q ss_pred CCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH--HHHHHHHHHHCCCCCHHHH Q ss_conf 88579987872566520689999997421676194399998502332110123224799--9999999981889998899 Q gi|254781016|r 72 DADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFA--ALTLALFRIYSIPEKSESL 149 (355) Q Consensus 72 ~~d~~~lnG~~~~~~~~~~~ri~~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfA--ALa~Al~~~~~~~~~~~~l 149 (355) +...+++||+.+.....-..++..|-+-+|. -.|-...+|+.+...| ||-..+..+.|-+.....+ T Consensus 30 ~~g~L~v~G~~v~L~~~Q~q~l~~Y~~~lr~------------~lP~~~~~A~~~l~~a~~ald~V~~~~~g~~~~~~~l 97 (229) T pfam11101 30 EDGQLFVDGKWVTLSADQQQALEQYSDGLRA------------QLPEVAALASEGVELANDALDEVATGLLGSSAVRAKL 97 (229) T ss_pred CCCCEEECCEECCCCHHHHHHHHHHHHHHHH------------HCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 9996789998677999999999999999999------------7868999999999999999999999870887788899 Q ss_pred HHHHHHCCCCCHHHHC Q ss_conf 9886521353034310 Q gi|254781016|r 150 SRVARLGSGSACRSFY 165 (355) Q Consensus 150 S~lARlGSGSA~RSi~ 165 (355) ..+=..-....-+++| T Consensus 98 ~~l~~~l~~~v~~~~~ 113 (229) T pfam11101 98 TTLMDQLKARVDDSFY 113 (229) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999998971 No 102 >COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism] Probab=21.43 E-value=52 Score=13.50 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.9 Q ss_pred CHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 78899999999997428961999 Q gi|254781016|r 276 QKETIQGMERVWDARQQSIPIYF 298 (355) Q Consensus 276 ~~~t~~ii~~v~~~R~~g~~v~f 298 (355) -=+|+.+|.++..+|++|..+-| T Consensus 28 GLDSiR~M~L~~~wR~~G~~i~F 50 (74) T COG3433 28 GLDSIRMMALLERWRKRGADIDF 50 (74) T ss_pred CHHHHHHHHHHHHHHHCCCCCCH T ss_conf 42599999999999980776649 No 103 >PRK13728 conjugal transfer protein TrbB; Provisional Probab=21.36 E-value=55 Score=13.30 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=6.9 Q ss_pred CCEEE-EEECCCCEE Q ss_conf 96199-997779817 Q gi|254781016|r 293 SIPIY-FTLDAGPNL 306 (355) Q Consensus 293 g~~v~-fT~DAGPNv 306 (355) |++|| ||+|.|+.. T Consensus 99 gi~V~~~SlDG~g~~ 113 (181) T PRK13728 99 GFSVFPYTLDGQGDT 113 (181) T ss_pred CCEEEEEEECCCCCC T ss_conf 971799853698887 No 104 >PRK10456 arginine succinyltransferase; Provisional Probab=21.26 E-value=56 Score=13.25 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=47.8 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECHHHHHHHHHHH--------HHHHCCC--EEEE-EECCCCEEEEE Q ss_conf 98099999999999999989998703899568-65788999999999--------9742896--1999-97779817999 Q gi|254781016|r 242 IIDQDFIKLGEVAEKNALKMHATMIAASPPLL-YWQKETIQGMERVW--------DARQQSI--PIYF-TLDAGPNLKLL 309 (355) Q Consensus 242 i~~~Df~~l~~i~e~dal~mHa~~~~s~P~~~-Y~~~~t~~ii~~v~--------~~R~~g~--~v~f-T~DAGPNv~il 309 (355) .-+-||.+.-.++-.....+.|-+|-..|=++ .+.++-.++|-.++ -+.+||. .-|. -|||||.+ = T Consensus 183 FF~mdF~~AD~lsg~~~k~FIaeLmP~~PiYv~lLp~~Aq~vIG~vH~~t~pA~~lLe~EGF~~~gyVDIFDaGP~l--e 260 (344) T PRK10456 183 FFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSEEAQAVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTL--E 260 (344) T ss_pred HCCCCHHHHHHHHCCCCCEEHHHHCCCCCEEHHCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCCEE--E T ss_conf 05998678678861577500887689986321049999999839969677999999997489768955444788458--9 Q ss_pred ECHHHHHHHHHH Q ss_conf 558989999999 Q gi|254781016|r 310 FTHKIEETIKQF 321 (355) Q Consensus 310 ~~~~~~~~i~~~ 321 (355) |.-++...|++. T Consensus 261 a~~~~IrtVr~S 272 (344) T PRK10456 261 CDIDRVRAIRKS 272 (344) T ss_pred EEHHHHHHHHHC T ss_conf 882221533528 No 105 >pfam07765 KIP1 KIP1-like protein. This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerize in vivo. Probab=20.70 E-value=57 Score=13.18 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.2 Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 988761856899997305509999999980999999999999 Q gi|254781016|r 215 EITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEK 256 (355) Q Consensus 215 ~~~v~tSp~y~~r~~~~~~~~~~~~~ai~~~Df~~l~~i~e~ 256 (355) |.+-+.||..+.=+...+.+++.|...|.+ |=+.|++-+|- T Consensus 7 H~~~~~SkWL~~nL~dmd~kvk~mlklI~e-dgdSfakrAem 47 (74) T pfam07765 7 HISPKNSKWLEENLQEMDSKVKEMLKLIEE-DADSFAKRAEM 47 (74) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHH T ss_conf 899767889998999999999999999874-05418999999 No 106 >PRK13196 pyrrolidone-carboxylate peptidase; Provisional Probab=20.69 E-value=53 Score=13.41 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=9.6 Q ss_pred HHHHHHCCCEEEEEECCCCEE Q ss_conf 999742896199997779817 Q gi|254781016|r 286 VWDARQQSIPIYFTLDAGPNL 306 (355) Q Consensus 286 v~~~R~~g~~v~fT~DAGPNv 306 (355) ++.+|+.|+|+..+-|||-=| T Consensus 125 v~~l~~~giPa~vS~sAGtyv 145 (212) T PRK13196 125 LAAWHEAEIPGDISNSAGLYV 145 (212) T ss_pred HHHHHHCCCCEEEECCCCCCH T ss_conf 999998599857857875206 No 107 >PRK08091 ribulose-phosphate 3-epimerase; Validated Probab=20.62 E-value=57 Score=13.17 Aligned_cols=44 Identities=5% Similarity=-0.008 Sum_probs=28.9 Q ss_pred HHHHCCCCCEEEE--CHHHHHHHHHHHHHHHC-CCEEEEEECCCCEE Q ss_conf 9870389956865--78899999999997428-96199997779817 Q gi|254781016|r 263 ATMIAASPPLLYW--QKETIQGMERVWDARQQ-SIPIYFTLDAGPNL 306 (355) Q Consensus 263 a~~~~s~P~~~Y~--~~~t~~ii~~v~~~R~~-g~~v~fT~DAGPNv 306 (355) -+.|+..|+|-.. .+.+++=|+.+++++.+ +...-.-.|.|=|. T Consensus 151 VLvMtV~PGfgGQ~fi~~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~ 197 (235) T PRK08091 151 IQLLTLDPRYGSKMRSSDLHERVAQLLCLLGDKREGKLIVIDGSMTQ 197 (235) T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH T ss_conf 99987668988886787899999999999996499915998489898 Done!