HHsearch alignment of GI: 254781016 and MMDB domain: 1kkh_A_1-181
>1kkh_A (A:1-181) Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=2.9e-08 Score=77.70 Aligned_cols=144 Identities=22% Similarity=0.219 Sum_probs=88.3
Q ss_pred CCCEEEECCCCEEEEE----CCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEC-----------CEECCC
Q ss_conf 7637897488424881----1677670117578984346812781079999717888579987-----------872566
Q gi|254781016|r 21 NEKSSAFLPSNIALCK----YWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILN-----------GQKISS 85 (355)
Q Consensus 21 ~~~~ta~ap~NIALIK----YWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~ln-----------G~~~~~ 85 (355)
..+.+++||-.|.|+= |+|. ..|+++++. ++..+++..+..+-++..+ +.....
T Consensus 3 ~~~~~~~aPgki~l~Ge~~d~~g~----------~~l~~ai~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 71 (181)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVVYGY----------RAISMAIDL-TSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNIN 71 (181)
T ss_dssp TCCEEEEEEEEEEEECTTGGGGTC----------CEEEEEEEE-EEEEEEEECCSSEEEEEETTTTEEEEEETTTGGGCC
T ss_pred CCEEEEEEEEEEEEECCCEEECCC----------CEEEEEECC-EEEEEEEECCCCEEEEEECCCCCCEEEEHHHCCCCC
T ss_conf 981999923499998068034699----------789999516-299999998898699997478862688501133358
Q ss_pred ---CCHHHHHHHHHHHHH-HHH--CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC---
Q ss_conf ---520689999997421-676--19439999850233211012322479999999999818899988999886521---
Q gi|254781016|r 86 ---QSSFFKKTTQFCDLF-RQF--SKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLG--- 156 (355)
Q Consensus 86 ---~~~~~~ri~~~l~~~-r~~--~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlG--- 156 (355)
......-+...+..+ +.. ....+.|...+++|.++||+||||..+|++.|++++++++++.+++..+|..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaa~~va~~~al~~~~~~~~s~~~l~~~a~~~E~~ 151 (181)
T 1kkh_A 72 PNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKE 151 (181)
T ss_dssp GGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 55443389999999999998288889877999967798877764568999999988666521479999997766888851
Q ss_pred -CCCC-----HHHHCCCCHHCCCCC
Q ss_conf -3530-----343105620025789
Q gi|254781016|r 157 -SGSA-----CRSFYRGFCEWICGT 175 (355)
Q Consensus 157 -SGSA-----~RSi~GG~v~W~~g~ 175 (355)
.|.+ +-|+|||++.+..+.
T Consensus 152 ~~g~~~g~D~~~~~~gg~~~~~~~~ 176 (181)
T 1kkh_A 152 IQGKASITDTSTITYKGILEIKNNK 176 (181)
T ss_dssp HSSSCCSHHHHHHHHCSEEEESSSC
T ss_pred CCCCCCCCCHHHHHCCCEEEEECCC
T ss_conf 4878786543554158659963685