HHsearch alignment of GI: 254781016 and MMDB domain: 1oj4_A_
>1oj4_A (A:) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase, isoprenoids biosynthesis, GHMP kinase superfamily transferase; HET: MSE CDM ANP; 2.01A {Escherichia coli}
Probab=99.05 E-value=2.5e-09 Score=85.09 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=94.0
Q ss_pred CEEEECCCCEEEEECC-CCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECCCCC--HHHHHHHHHH--
Q ss_conf 3789748842488116-7767011757898434681278107999971788857998787256652--0689999997--
Q gi|254781016|r 23 KSSAFLPSNIALCKYW-GKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKISSQS--SFFKKTTQFC-- 97 (355)
Q Consensus 23 ~~ta~ap~NIALIKYW-GK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~~~~--~~~~ri~~~l-- 97 (355)
|.+++||-+|-|=-.+ |++-....-| .++.+.+ +.+++.+++ +.+...+.+.+....... ....+....+
T Consensus 2 ki~v~aPaki~L~l~~~Ge~~d~y~~~--~v~~~ai-~~~~~i~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (283)
T 1oj4_A 2 RTQWPSPAKLNLFLYITGQRADGYHTL--QTLFQFL-DYGDTISIE--LRDDGDIRLLTPVEGVEHEDNLIVRAARLLXK 76 (283)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEE--EEEEEEE-EEEEEEEEE--EESSSCEEECSCBTTBCGGGSHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCEEECCCCCCCCCEE--EEEEEEE-CCCEEEEEE--ECCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 836487005701535378699997324--8899983-787199999--98999889971766677531389999998798
Q ss_pred -HHHHHHC--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHCC
Q ss_conf -4216761--94399998502332110123224799999999998188999889998865213530343105620025
Q gi|254781016|r 98 -DLFRQFS--KVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWI 172 (355)
Q Consensus 98 -~~~r~~~--~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARlGSGSA~RSi~GG~v~W~ 172 (355)
..++... ...+.|...+++|.++||+||||..+|+..|++++++.+++.+++..+|....-...-++.|+++...
T Consensus 77 ~~~~~~~~~~~~g~~i~i~s~IP~~~GLGSSsA~ava~~~al~~~~~~~l~~~el~~~a~~~~~~v~~~~~~~~~~~~ 154 (283)
T 1oj4_A 77 TAADSGRLPTGSGANISIDKRLPXGGGLGGGSSNAATVLVALNHLWQCGLSXDELAEXGLTLGADVPVFVRGHAAFAE 154 (283)
T ss_dssp HHHHTTCSCTTCEEEEEEECCSCSSTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHGGGCTTHHHHHHCBCEEEE
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCEEEC
T ss_conf 754444315688459999568875455665368999999754420124621899999875206886215348625642