HHSEARCH alignment of GI: 254781016 and SCOP domain: d1k47a1

Alignment

Probab=98.40  E-value=2.8e-06  Score=61.10  Aligned_cols=126  Identities=17%  Similarity=0.147  Sum_probs=81.1

Q ss_pred             HCC-CCCCCEEEEECCCCEEEEEEECCCCCCEEEECCEECC------CCCHHHHHHHHHHHHHHHHCC---CEEEEEEEC
Q ss_conf             175-7898434681278107999971788857998787256------652068999999742167619---439999850
Q gi|254781016|r   45 LNL-PLNNSLSLSLGHLGTITHITVIDSDADCIILNGQKIS------SQSSFFKKTTQFCDLFRQFSK---VYFLIETSN  114 (355)
Q Consensus        45 l~l-P~n~SiS~TL~~~~T~T~v~~~~~~~d~~~lnG~~~~------~~~~~~~ri~~~l~~~r~~~~---~~~~I~S~N  114 (355)
                      -.+ |=.+.|++.+|. +++.+++  +.+..++........      ........+.+++..+-...+   ..+.|.-..
T Consensus        17 aVv~~G~~ala~ai~~-~~~v~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s   93 (194)
T d1k47a1          17 AILEPGQLALIKDIPI-YMRAEIA--FSDSYRIYSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYG   93 (194)
T ss_dssp             GGGSTTCEEEEEEEEE-EEEEEEE--ECSSCEEEEEC---------CCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEES
T ss_pred             EEECCCCEEEEEEEEC-EEEEEEE--ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             8960898199999804-5999999--888862775203433112567411688999999999999708988871899974


Q ss_pred             CCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------CCCCC---HHHHCCCCHHCCC
Q ss_conf             233211---01232247999999999981889998899988652------13530---3431056200257
Q gi|254781016|r  115 NIPTKA---GLASSASGFAALTLALFRIYSIPEKSESLSRVARL------GSGSA---CRSFYRGFCEWIC  173 (355)
Q Consensus       115 ~fPtaa---GLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------GSGSA---~RSi~GG~v~W~~  173 (355)
                      +.|.++   ||+|||+...|++.|+.++++++++.+++..+|..      |.||+   +-|+|||++....
T Consensus        94 ~ip~~~~~~GLGSSAA~~va~~~al~~~~~~~ls~~~i~~lA~~~e~~~~g~~SG~D~a~s~~GG~i~y~~  164 (194)
T d1k47a1          94 KMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQS  164 (194)
T ss_dssp             HHHHSTTSSCSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCCHHHHHHHHTSCEEEEC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE
T ss_conf             68666677764422789999999999870778999999999999999863588853345887498499982

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]