HHSEARCH alignment of GI: 254781016 and SCOP domain: d1kkha1

Alignment
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.78  E-value=8.4e-08  Score=71.74  Aligned_cols=145  Identities=25%  Similarity=0.291  Sum_probs=90.4

Q ss_pred             CCCEEEECCCCEEEEECCCCCCHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEC--CE-----------ECCCCC
Q ss_conf             76378974884248811677670117578984346812781079999717888579987--87-----------256652
Q gi|254781016|r   21 NEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCIILN--GQ-----------KISSQS   87 (355)
Q Consensus        21 ~~~~ta~ap~NIALIKYWGK~d~~l~lP~n~SiS~TL~~~~T~T~v~~~~~~~d~~~ln--G~-----------~~~~~~   87 (355)
                      ..+..++||-.|-|+   |-+-.   +==.+.|++++| .+++.+++  +..++.+.++  +.           ......
T Consensus         3 ~~~~~~~aPgkv~L~---GEh~~---~~G~~~l~~aI~-~~~~v~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   73 (180)
T d1kkha1           3 GSHMIIETPSKVILF---GEHAV---VYGYRAISMAID-LTSTIEIK--ETQEDEIILNLNDLNKSLGLNLNEIKNINPN   73 (180)
T ss_dssp             TCCEEEEEEEEEEEE---CTTGG---GGTCCEEEEEEE-EEEEEEEE--ECCSSEEEEEETTTTEEEEEETTTGGGCCGG
T ss_pred             CCEEEEECCEEEEEE---CCCEE---ECCCEEEEEEEE-CEEEEEEE--ECCCCCCCEEEECCCCEEEECCHHCCCCCCC
T ss_conf             976999838799997---46868---729879999970-87999999--8898775214403464145420011235832


Q ss_pred             --HHHHHHH----HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------
Q ss_conf             --0689999----9974216761943999985023321101232247999999999981889998899988652------
Q gi|254781016|r   88 --SFFKKTT----QFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL------  155 (355)
Q Consensus        88 --~~~~ri~----~~l~~~r~~~~~~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~~~~lS~lARl------  155 (355)
                        ...+.+.    .++++........+.|....++|.++||+||||..+|++.|+..+++++++.+++..+|..      
T Consensus        74 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~  153 (180)
T d1kkha1          74 NFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQ  153 (180)
T ss_dssp             GSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             00348999999999999858899987799994150100375654003999999999985767998999999999999868


Q ss_pred             CCCC---CHHHHCCCCHHCCCC
Q ss_conf             1353---034310562002578
Q gi|254781016|r  156 GSGS---ACRSFYRGFCEWICG  174 (355)
Q Consensus       156 GSGS---A~RSi~GG~v~W~~g  174 (355)
                      |.||   .+-++|||++.+..+
T Consensus       154 g~~sg~D~~~~~~Gg~i~~~~~  175 (180)
T d1kkha1         154 GKASITDTSTITYKGILEIKNN  175 (180)
T ss_dssp             SSCCSHHHHHHHHCSEEEESSS
T ss_pred             CCCCHHHHHHHHHCCEEEEECC
T ss_conf             9987899999981997999579


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]