HHSEARCH alignment of GI: 254781016 and SCOP domain: d1kvka1

Alignment
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=97.90  E-value=6.6e-05  Score=51.50  Aligned_cols=69  Identities=25%  Similarity=0.228  Sum_probs=52.9

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHH--------CCC-CCHH
Q ss_conf             399998502332110123224799999999998188999---------------8899988652--------135-3034
Q gi|254781016|r  107 YFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEK---------------SESLSRVARL--------GSG-SACR  162 (355)
Q Consensus       107 ~~~I~S~N~fPtaaGLASSASgfAALa~Al~~~~~~~~~---------------~~~lS~lARl--------GSG-SA~R  162 (355)
                      .+.|...-++|..+||+||||-..|++.|+..+++...+               .+++.+||..        +|| ..+=
T Consensus       128 g~~i~i~s~lP~g~GLGSSAAl~va~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lA~~~E~~~~g~~SG~D~a~  207 (225)
T d1kvka1         128 SLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSV  207 (225)
T ss_dssp             CEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSHHHHH
T ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             86999967888874535215889999999999737666742110000344455599999999999998679975898999


Q ss_pred             HHCCCCHHCCCCC
Q ss_conf             3105620025789
Q gi|254781016|r  163 SFYRGFCEWICGT  175 (355)
Q Consensus       163 Si~GG~v~W~~g~  175 (355)
                      |+|||++...+|.
T Consensus       208 ~~~Gg~i~f~~g~  220 (225)
T d1kvka1         208 STWGGALRYQQGK  220 (225)
T ss_dssp             HHHCSEEEESSSC
T ss_pred             HHCCCEEEEECCC
T ss_conf             9669669995899


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]