RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} (A:32-61,A:179-397) Length = 249 Score = 172 bits (438), Expect = 6e-44 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 10/199 (5%) Query: 162 RSFYRGFCEWICGTDQNGMDSFAVPF--NNQWPDLRIGLLKIIDREKKIGSREAMEITRH 219 +S + G+ W G ++G DS AV ++ WP + +L + D +K + S + ++T Sbjct: 30 QSLFGGYVAWEXGKAEDGHDSXAVQIADSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVA 89 Query: 220 HSPFFTQW-TQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPPLLYWQKE 278 S F + + ++AI+++DF + ++ HAT + + PP+ Y Sbjct: 90 TSELFKERIEHVVPKRFEVXRKAIVEKDFATFAKETXXDSNSFHATCLDSFPPIFYXNDT 149 Query: 279 TIQGMERVWDARQQ--SIPIYFTLDAGPNLKLLFTHK----IEETIKQFFPEITIIDP-L 331 + + + Q + +T DAGPN L + + + I + F + D Sbjct: 150 SKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENESKLFAFIYKLFGSVPGWDKKF 209 Query: 332 DSPDLWSTKDSLSQKNSIE 350 + L + N Sbjct: 210 TTEQLEAFNHQFESSNFTA 228 Score = 58.3 bits (141), Expect = 1e-09 Identities = 19/27 (70%), Positives = 24/27 (88%) Query: 31 NIALCKYWGKRDSKLNLPLNNSLSLSL 57 NIA KYWGKRD+KLNLP N+S+S++L Sbjct: 2 NIATLKYWGKRDTKLNLPTNSSISVTL 28 >2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB: 2hk3_A (A:176-322) Length = 147 Score = 171 bits (436), Expect = 1e-43 Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKL 250 DL + + I KK+ SR M +TR+ S F+ W I DLA K AI D+DF +L Sbjct: 2 EDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDHIDEDLAEAKAAIQDKDFKRL 61 Query: 251 GEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLF 310 GEV E+N L+MHAT + ++PP Y +E+ M V + R+ P YFT+DAGPN+K+L Sbjct: 62 GEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHECREAGYPCYFTMDAGPNVKILV 121 Query: 311 THK----IEETIKQFFPEITIID 329 K I + + F IID Sbjct: 122 EKKNKQQIIDKLLTQFDNNQIID 144 >2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} (A:179-364) Length = 186 Score = 153 bits (389), Expect = 3e-38 Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 7/141 (4%) Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQI-STDLAHIKQAIIDQDFIK 249 WP++++ + +K + S + M+ + SP + + + +AI +DF Sbjct: 2 WPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFAT 61 Query: 250 LGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQ--SIPIYFTLDAGPNLK 307 E+A + + P + Y +++ + V + + +T DAG N Sbjct: 62 FAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCF 121 Query: 308 LLFTHK----IEETIKQFFPE 324 L + + + FP Sbjct: 122 LFVLKEDLPEAVAMLMEHFPT 142 >2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} (A:170-317) Length = 148 Score = 152 bits (385), Expect = 9e-38 Identities = 46/133 (34%), Positives = 66/133 (49%) Query: 193 DLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGE 252 L + +K I SRE ++ R S F QW +Q + D H + +F K+G+ Sbjct: 2 KXAXIXLVLNAAKKPISSREGXKLCRDTSTTFDQWVEQSAIDYQHXLTYLKTNNFEKVGQ 61 Query: 253 VAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTH 312 + E NAL HAT A+PP Y KE+ Q E V + RQ+ YFT DAGPN+K+L Sbjct: 62 LTEANALAXHATTKTANPPFSYLTKESYQAXEAVKELRQEGFACYFTXDAGPNVKVLCLE 121 Query: 313 KIEETIKQFFPEI 325 K + + + Sbjct: 122 KDLAQLAERLGKN 134 >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} (A:173-323) Length = 151 Score = 151 bits (383), Expect = 1e-37 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 2/136 (1%) Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKL 250 + DL ++ I +EK+I SR A + SPF+ +++ +L + A ++D+ + Sbjct: 1 YKDLLHQVIVISSQEKEIPSRVAHK-LVKTSPFYETRSERAEANLKLLLNAFENKDWTSI 59 Query: 251 GEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS-IPIYFTLDAGPNLKLL 309 ++ L H P Y T+ + + + T DAGPN+ LL Sbjct: 60 YQICWHEFLDXHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTXDAGPNVHLL 119 Query: 310 FTHKIEETIKQFFPEI 325 + + +QF + Sbjct: 120 YRSDQTDLARQFKSDH 135 >3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A (A:205-389) Length = 185 Score = 115 bits (289), Expect = 9e-27 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 7/147 (4%) Query: 191 WPDLRIGLLKIIDREKKIGSREAMEITRHHSPFFTQW-TQQISTDLAHIKQAIIDQDFIK 249 WP LRI +L + +K+ GS M+ + S + + + + I +QDF Sbjct: 2 WPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQG 61 Query: 250 LGEVAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQQS--IPIYFTLDAGPNLK 307 ++ K++ + HAT + PP+ Y + + ++ V + +T DAGPN Sbjct: 62 FAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAV 121 Query: 308 LLFTHK----IEETIKQFFPEITIIDP 330 + ++ FP D Sbjct: 122 IFTLEDTVAEFVAAVRHSFPPAANGDK 148 >3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A (A:1-204,A:390-414) Length = 229 Score = 99 bits (248), Expect = 4e-22 Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 23/207 (11%) Query: 5 LRHILHRYIGECNPKINEKS----SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHL 60 + H H G N + P NIA+ KYWGKRD L LP+N+SLS++L Sbjct: 1 MHHHHHHSSGRENLYFQGPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQD 60 Query: 61 GTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVY------------- 107 T TV S + + R+ ++ Sbjct: 61 QLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSL 120 Query: 108 ---FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSF 164 + + NN PT AGLASSA+G+A L L ++Y + LS VAR GSGSACRS Sbjct: 121 SYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVEGD---LSEVARRGSGSACRSL 177 Query: 165 YRGFCEWICGTDQNGMDSFAVPFNNQW 191 Y GF EW G +G DS A +W Sbjct: 178 YGGFVEWQMGEQADGKDSIARQIAPEW 204 >2gs8_A Mevalonate pyrophosphate decarboxylase; structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} (A:1-169) Length = 169 Score = 96.0 bits (238), Expect = 7e-21 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 4/170 (2%) Query: 17 NPKINEKSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDSDADCI 76 N + +NIA+ KYWGK + +P +S+SL+L + T T ++ + A Sbjct: 2 NAXDPNVITVTSYANIAIIKYWGKENQAKXIPSTSSISLTLENXFTTTSVSFLPDTATSD 61 Query: 77 ILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLAL 136 I K + D FRQ + + ET NN PT AGL+SS+SG +AL A Sbjct: 62 QFYINGILQNDEEHTKISAIIDQFRQPGQAFVKXETQNNXPTAAGLSSSSSGLSALVKAC 121 Query: 137 FRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVP 186 +++ ++L++ A+ SGS+ RSF+ W + V Sbjct: 122 DQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDKD----SGAIYKVE 167 >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} (A:1-172) Length = 172 Score = 82.5 bits (203), Expect = 7e-17 Identities = 56/164 (34%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS---DADCIILNGQ 81 A P+NIAL KY GK+D NLP N+SLS +L +L + + + + + + + G Sbjct: 4 FAQAPANIALIKYXGKKDENSNLPDNSSLSYTLSNLLSSVKLEKLPTKKDIWEPLTIPGA 63 Query: 82 KISSQSSFFKKT-TQFCDLFRQFSKVY--FLIETSNNIPTKAGLASSASGFAALTLALFR 138 + S +K +++ FLI++SNN P +GLASSAS FAALT Sbjct: 64 PEFNLSVEAQKRFIDHLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCASI 123 Query: 139 IYSIPEKSESLSR-----VARLGSGSACRSFYRGFCEWICGTDQ 177 S + S ++RLGSGS+CRSFY + W Sbjct: 124 ALSELTQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALWTGDKVS 167 >2hk2_A Diphosphomevalonate decarboxylase; mevalonate diphosphate decarboxylase, lyase; 2.30A {Staphylococcus aureus} PDB: 2hk3_A (A:1-175,A:323-331) Length = 184 Score = 80.7 bits (198), Expect = 3e-16 Identities = 65/164 (39%), Positives = 86/164 (52%), Gaps = 1/164 (0%) Query: 25 SAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVIDS-DADCIILNGQKI 83 A +NIAL KYWGK+D L +P+NNS+S++L T T +T D D LNG+K+ Sbjct: 10 KARAHTNIALIKYWGKKDEALIIPMNNSISVTLEKFYTETKVTFNDQLTQDQFWLNGEKV 69 Query: 84 SSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIP 143 S + R Y IE+ N +PT AGLASSAS +AAL A + + Sbjct: 70 SGKELEKISKYMDIVRNRAGIDWYAEIESDNFVPTAAGLASSASAYAALAAACNQALDMQ 129 Query: 144 EKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187 + LSR+AR+GSGSA RS Y GF EW G + + Sbjct: 130 LSDKDLSRLARIGSGSASRSIYGGFAEWEKGYSDETSYAVPLES 173 >2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} (A:1-178,A:365-380) Length = 194 Score = 79.1 bits (194), Expect = 7e-16 Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 13/172 (7%) Query: 25 SAFLPSNIALCKYWGKRDSK--LNLPLNNSLS--LSLGHLGTITHITVIDSDADCIILNG 80 + P NIA KYWGKR+ L LP N+S S LS + T + + D + Sbjct: 7 TVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLN 66 Query: 81 QKISSQSSFFKKTTQFCDLFRQFSKVYFL-----IETSNNIPTKAGLASSASGFAALTLA 135 + R I + NN PT AG+ASSASG+ A++ A Sbjct: 67 GTEVDVG-KTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAA 125 Query: 136 LFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187 L R + ++S +ARLGSGSACRS + GF W G +G D A F Sbjct: 126 LIRAFKSTT---NVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDCVATQF 174 >1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} (A:1-31,A:62-178,A:398-416) Length = 167 Score = 60.5 bits (146), Expect = 3e-10 Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 12/128 (9%) Query: 59 HLGTITHITVIDS-DADCIILNGQKISSQSSFFKKTTQ---------FCDLFRQFSKVY- 107 L T+T + D + LNG+ S + + + + Sbjct: 33 DLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDLRQLRKEXESKDASLPTLSQW 92 Query: 108 -FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYR 166 I + NN PT AGLASSA+GFAAL A+ ++Y +P+ + +SR+AR GSGSACR Sbjct: 93 KLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRGPQE 152 Query: 167 GFCEWICG 174 I Sbjct: 153 TNESLIDA 160 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 39.4 bits (92), Expect = 7e-04 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 25/52 (48%) Query: 135 ALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVP 186 +L + SI ESL V FYRG T Q AVP Sbjct: 1 SLADVMSI----ESLVEVV----------FYRGM------TMQV-----AVP 27 >2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* (A:1-158) Length = 158 Score = 37.8 bits (87), Expect = 0.002 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 110 IETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA-RLGSGSAC 161 I NIP AGL +S A + + + P E L + + + + Sbjct: 84 IFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISADAPF 136 >3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} (A:1-154,A:284-298) Length = 169 Score = 37.0 bits (85), Expect = 0.004 Identities = 12/110 (10%), Positives = 26/110 (23%), Gaps = 6/110 (5%) Query: 64 THITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLA 123 + + I + + + + +IP GL Sbjct: 29 LTLDIGAEADSWYIEHNIGGGIPHDETNVIIETALNLAPNLT-PHHLVMTCDIPPARGLG 87 Query: 124 SSASGFAALTLALFRIYSIPEKSESLSRVA----RLGSGSACRSFYRGFC 169 SS++ A + + E R+A A + + Sbjct: 88 SSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGHPDNVAP-AVLGNWV 136 >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} (A:1-227,A:375-395) Length = 248 Score = 35.8 bits (81), Expect = 0.008 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 2/80 (2%) Query: 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYR- 166 I + +P AGL SSA+ + AL +S + Sbjct: 129 LDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKW 188 Query: 167 -GFCEWICGTDQNGMDSFAV 185 E + + +G+D+ Sbjct: 189 AYEGERVIHGNPSGVDNSVS 208 >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} (A:1-181) Length = 181 Score = 34.9 bits (79), Expect = 0.015 Identities = 14/46 (30%), Positives = 22/46 (47%) Query: 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA 153 F I S+ IP GL SSAS A+ Y+ K + ++++ Sbjct: 100 FKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLG 145 >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* (A:1-238,A:468-478) Length = 249 Score = 34.6 bits (78), Expect = 0.023 Identities = 13/98 (13%), Positives = 22/98 (22%), Gaps = 6/98 (6%) Query: 96 FCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARL 155 + F + NIP +GL+SS++ L + L+ + Sbjct: 138 IQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAK 197 Query: 156 ------GSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187 G E A Sbjct: 198 SERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDV 235 >1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} (C:1-164,C:290-296) Length = 171 Score = 34.3 bits (78), Expect = 0.024 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 17/149 (11%) Query: 52 SLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSS---FFKKTTQFCDLFRQFSKVYF 108 L L + + ID I ++ + I + + D F V Sbjct: 20 VFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGKGVKI 79 Query: 109 LIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA----RLGSGSACR-- 162 I+ + +GL SSA+ A A+ ++ + L A SG+ Sbjct: 80 TIK--KGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHADN 137 Query: 163 ---SFYRGFCEWICGTDQNGMDSFAVPFN 188 + + GF T+ ++ +P + Sbjct: 138 VAPAIFGGFT---MVTNYEPLEVLHIPID 163 >1oj4_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase, isoprenoids biosynthesis, GHMP kinase superfamily transferase; HET: MSE CDM ANP; 2.01A {Escherichia coli} (A:) Length = 283 Score = 32.6 bits (73), Expect = 0.080 Identities = 35/277 (12%), Positives = 75/277 (27%), Gaps = 16/277 (5%) Query: 23 KSSAFLPSNIALCKYW-GKRDSKLNLPLNNSLSLSLGHLGTITHIT--VIDSDADCIILN 79 ++ P+ + L Y G+R + L G +I I + Sbjct: 2 RTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVE 61 Query: 80 GQKISSQSSFFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRI 139 + + D R + I +P GL +S A + +AL + Sbjct: 62 HEDNLIVRAARLLXKTAADSGRLPTGSGANISIDKRLPXGGGLGGGSSNAATVLVALNHL 121 Query: 140 YSIPEKSESLSRVA-RLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPFNNQWPDLRIGL 198 + + L+ LG+ G +D + P + I Sbjct: 122 WQCGLSXDELAEXGLTLGADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPT 181 Query: 199 LKIIDREKKIGSREAMEITRHHSPFFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNA 258 I + T + S D I + + + V Sbjct: 182 -------PVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFRE----VDAVLSW-L 229 Query: 259 LKMHATMIAASPPLLYWQKETIQGMERVWDARQQSIP 295 L+ + + + ++ + +T +V + + + Sbjct: 230 LEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLN 266 >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} (A:1-210,A:351-365) Length = 225 Score = 32.2 bits (72), Expect = 0.11 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 13/99 (13%) Query: 89 FFKKTTQFCDLFRQFSKVYFLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSES 148 + + K E + K GL SSA+ A+ AL + Sbjct: 84 IATTFLKSEGIELTPVKXVIETELIDQSGAKYGLGSSAAATVAVINALXTKFYPEISXLK 143 Query: 149 LSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF 187 ++A L + + + D + + Sbjct: 144 KFKLAALS-------------HLVVQGNGSCGDIASCXY 169 >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} (A:1-159) Length = 159 Score = 31.2 bits (70), Expect = 0.23 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 3/98 (3%) Query: 59 HLGTITHITVIDSDADCIILN-GQKISSQSSFFKKTTQFCDLFRQFSKVYFL--IETSNN 115 G + + + + + E + Sbjct: 23 VYGYPAISLPLLEVEVTCKVVPAESPWRLYEEDTLSMAVYASLEYLNITEACIRCEIDSA 82 Query: 116 IPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVA 153 IP K G+ SSA+ A A+F Y + L + Sbjct: 83 IPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILV 120 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 30.2 bits (68), Expect = 0.43 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 19/87 (21%) Query: 210 SREAMEITRHHSPF----FTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATM 265 +RE ++ SP + + +Q+ T A IK E ALK+ A Sbjct: 10 AREHHSSVKYASPNLNMKYRK--RQLVTREAQIKDW----------VENELEALKLEAEE 57 Query: 266 IAASPPLLYWQKETIQGMERVWDARQQ 292 I + + E + + +A Q Sbjct: 58 IPSEDQNEFLL-ERTREIHN--EAESQ 81 >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} (A:1-232,A:410-419) Length = 242 Score = 29.9 bits (66), Expect = 0.53 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%) Query: 110 IETSNNIPTKAGLASSASGFAALTLALFRIYSIP----EKSESLSRVARLGSGSAC 161 + IPT +GL+SSAS + + L ++++ E + + G Sbjct: 144 LLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNS 199 >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} (A:59-234) Length = 176 Score = 29.9 bits (66), Expect = 0.55 Identities = 14/150 (9%), Positives = 37/150 (24%), Gaps = 6/150 (4%) Query: 120 AGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNG 179 G S T+ F + K + R+ +G + + I + Sbjct: 14 QGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLXTDDGQWSHRITSPRHHC 73 Query: 180 MDSF-AVPFNNQWPDLRIGLLKIIDREKKIGSREAMEITRHHSPFF-----TQWTQQIST 233 ++ + D K + + + + Q+ Sbjct: 74 EKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKR 133 Query: 234 DLAHIKQAIIDQDFIKLGEVAEKNALKMHA 263 A + +++ ++G + L Sbjct: 134 XFAAVGNHVVELHRERIGGITLDADLAPGE 163 >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} (A:1-187,A:332-357) Length = 213 Score = 29.1 bits (64), Expect = 1.0 Identities = 14/47 (29%), Positives = 22/47 (46%) Query: 108 FLIETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVAR 154 F I T N+ P +GL +S++ + A S+P SR+A Sbjct: 99 FKITTYNDAPAGSGLGTSSTXVVCILKAFIEWLSLPLGDYETSRLAY 145 >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X (A:1-111) Length = 111 Score = 27.5 bits (61), Expect = 2.7 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 301 DAGPNLKLLFTHKIEETIKQFFPEITIIDPLDS 333 D + L H+ +E I PE ++DPL + Sbjct: 79 DQNDSQSLELVHRFQEYIDAH-PETIVLDPLPA 110 >2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} (A:) Length = 332 Score = 27.1 bits (60), Expect = 4.0 Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 9/75 (12%) Query: 151 RVARLGSGSACRSFYRGFCEW-------ICGTDQNGMDSFAVPFNN--QWPDLRIGLLKI 201 V +G G+ RG E+ + D G + D+R + + Sbjct: 6 NVVLIGGGTGLSVLARGLREFPIDITAIVTVADNGGSTGKIRDVXDIPAPGDIRNVIAAL 65 Query: 202 IDREKKIGSREAMEI 216 D E + Sbjct: 66 SDSESILTQLFQYRF 80 >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} (A:45-81,A:463-595) Length = 170 Score = 27.0 bits (59), Expect = 4.3 Identities = 5/16 (31%), Positives = 7/16 (43%) Query: 165 YRGFCEWICGTDQNGM 180 Y +C+W C M Sbjct: 144 YWYYCQWFCHALHMEM 159 >1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} (A:453-581) Length = 129 Score = 26.2 bits (57), Expect = 6.4 Identities = 5/16 (31%), Positives = 6/16 (37%) Query: 165 YRGFCEWICGTDQNGM 180 Y +C W C M Sbjct: 105 YWYYCNWFCHALHMEM 120 >1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis mr-1} (A:) Length = 170 Score = 25.9 bits (57), Expect = 7.5 Identities = 8/41 (19%), Positives = 13/41 (31%) Query: 275 WQKETIQGMERVWDARQQSIPIYFTLDAGPNLKLLFTHKIE 315 + + + + +RQ IYF L G E Sbjct: 31 FYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADE 71 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0683 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,620,721 Number of extensions: 112832 Number of successful extensions: 248 Number of sequences better than 10.0: 1 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 39 Length of query: 355 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 266 Effective length of database: 1,947,404 Effective search space: 518009464 Effective search space used: 518009464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.1 bits)