RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781016|ref|YP_003065429.1| diphosphomevalonate
decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus
Liberibacter asiaticus str. psy62]
         (355 letters)



>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score =  181 bits (461), Expect = 6e-47
 Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 16/186 (8%)

Query: 23  KSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVI---DSDADCIILN 79
            +S   P NIA  KYWGKRD+KLNLP N+S+S++L      T  +     + + D + LN
Sbjct: 3   TASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLN 62

Query: 80  GQKISSQSSFFKKTTQFCDLFRQF-----------SKVYFLIETSNNIPTKAGLASSASG 128
           G+  S  +   +   +     R+            S+    I + NN PT AGLASSA+G
Sbjct: 63  GEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAG 122

Query: 129 FAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF- 187
           FAAL  A+ ++Y +P+ +  +SR+AR GSGSACRS + G+  W  G  ++G DS AV   
Sbjct: 123 FAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDSMAVQIA 182

Query: 188 -NNQWP 192
            ++ WP
Sbjct: 183 DSSDWP 188


>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate
           decarboxylase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 203

 Score =  149 bits (377), Expect = 5e-37
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 8/165 (4%)

Query: 194 LRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQIS-TDLAHIKQAIIDQDFIKLGE 252
           ++  +L + D +K + S + M++T   S  F +  + +       +++AI+++DF    +
Sbjct: 2   MKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAK 61

Query: 253 VAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLF 310
               ++   HAT + + PP+ Y    + + +       Q      + +T DAGPN  L +
Sbjct: 62  ETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYY 121

Query: 311 THKIEETIKQFFPEITIIDPLDSPDLWSTKDSLSQKNSIELGISK 355
             + E  +  F  ++       S   W  K +  Q  +       
Sbjct: 122 LAENESKLFAFIYKL-----FGSVPGWDKKFTTEQLEAFNHQFES 161


>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 163

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 1/113 (0%)

Query: 52  SLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFS-KVYFLI 110
              L L     +  +  ID     I ++ + I +             +   F+      I
Sbjct: 20  VFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGKGVKI 79

Query: 111 ETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRS 163
                +   +GL SSA+  A    A+  ++ +      L   A  G  ++  +
Sbjct: 80  TIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGA 132


>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus,
           ba3 type [TaxId: 274]}
          Length = 122

 Score = 27.0 bits (59), Expect = 2.8
 Identities = 6/16 (37%), Positives = 6/16 (37%)

Query: 165 YRGFCEWICGTDQNGM 180
           YR  C   CG     M
Sbjct: 99  YRIICNQYCGLGHQNM 114


>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal
           domain {Paracoccus denitrificans [TaxId: 266]}
          Length = 132

 Score = 25.8 bits (56), Expect = 5.4
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 165 YRGFCEWICGTDQNGM 180
           Y  +C+W C      M
Sbjct: 108 YWYYCQWFCHALHMEM 123


>d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 118

 Score = 25.6 bits (56), Expect = 6.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 250 LGEVAEKNALKMHATMIAASPPLLYWQKETIQGMER 285
           L E  E   +KM   +   +  LL W +E   G++R
Sbjct: 61  LEERKEDQYMKMTVQLETQNKGLLSWIEEKGPGLKR 96


>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal
           domain {Pseudomonas nautica [TaxId: 2743]}
          Length = 131

 Score = 25.4 bits (55), Expect = 6.7
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 165 YRGFCEWICGTDQNGM 180
           Y  +C W C      M
Sbjct: 107 YWYYCNWFCHALHMEM 122


>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 116

 Score = 25.4 bits (55), Expect = 6.8
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 223 FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPP 271
           ++  +   +  D+  +       DF  L + A +  LK    M+   P 
Sbjct: 36  YYALFVDTVPDDVKRLYTEAATSDFAALAQTAHR--LKGVFAMLNLVPG 82


>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice
           (Oryza sativa) [TaxId: 4530]}
          Length = 73

 Score = 25.1 bits (55), Expect = 9.4
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 314 IEETIKQFFPEITIIDPLD 332
           + + +++  P I I+  L 
Sbjct: 55  VSKKLREKIPSIQIVQLLS 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,302,063
Number of extensions: 58822
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 15
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)