RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781016|ref|YP_003065429.1| diphosphomevalonate decarboxylase/isopentenyl-diphosphate delta-isomerase [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Score = 181 bits (461), Expect = 6e-47 Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 16/186 (8%) Query: 23 KSSAFLPSNIALCKYWGKRDSKLNLPLNNSLSLSLGHLGTITHITVI---DSDADCIILN 79 +S P NIA KYWGKRD+KLNLP N+S+S++L T + + + D + LN Sbjct: 3 TASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLN 62 Query: 80 GQKISSQSSFFKKTTQFCDLFRQF-----------SKVYFLIETSNNIPTKAGLASSASG 128 G+ S + + + R+ S+ I + NN PT AGLASSA+G Sbjct: 63 GEPHSIDNERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAG 122 Query: 129 FAALTLALFRIYSIPEKSESLSRVARLGSGSACRSFYRGFCEWICGTDQNGMDSFAVPF- 187 FAAL A+ ++Y +P+ + +SR+AR GSGSACRS + G+ W G ++G DS AV Sbjct: 123 FAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDSMAVQIA 182 Query: 188 -NNQWP 192 ++ WP Sbjct: 183 DSSDWP 188 >d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Score = 149 bits (377), Expect = 5e-37 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 8/165 (4%) Query: 194 LRIGLLKIIDREKKIGSREAMEITRHHSPFFTQWTQQIS-TDLAHIKQAIIDQDFIKLGE 252 ++ +L + D +K + S + M++T S F + + + +++AI+++DF + Sbjct: 2 MKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAK 61 Query: 253 VAEKNALKMHATMIAASPPLLYWQKETIQGMERVWDARQ--QSIPIYFTLDAGPNLKLLF 310 ++ HAT + + PP+ Y + + + Q + +T DAGPN L + Sbjct: 62 ETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYY 121 Query: 311 THKIEETIKQFFPEITIIDPLDSPDLWSTKDSLSQKNSIELGISK 355 + E + F ++ S W K + Q + Sbjct: 122 LAENESKLFAFIYKL-----FGSVPGWDKKFTTEQLEAFNHQFES 161 >d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Score = 39.7 bits (92), Expect = 4e-04 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 1/113 (0%) Query: 52 SLSLSLGHLGTITHITVIDSDADCIILNGQKISSQSSFFKKTTQFCDLFRQFS-KVYFLI 110 L L + + ID I ++ + I + + F+ I Sbjct: 20 VFGLCLKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDKNVAGIVAKKMIDDFNIGKGVKI 79 Query: 111 ETSNNIPTKAGLASSASGFAALTLALFRIYSIPEKSESLSRVARLGSGSACRS 163 + +GL SSA+ A A+ ++ + L A G ++ + Sbjct: 80 TIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGA 132 >d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Length = 122 Score = 27.0 bits (59), Expect = 2.8 Identities = 6/16 (37%), Positives = 6/16 (37%) Query: 165 YRGFCEWICGTDQNGM 180 YR C CG M Sbjct: 99 YRIICNQYCGLGHQNM 114 >d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Length = 132 Score = 25.8 bits (56), Expect = 5.4 Identities = 5/16 (31%), Positives = 7/16 (43%) Query: 165 YRGFCEWICGTDQNGM 180 Y +C+W C M Sbjct: 108 YWYYCQWFCHALHMEM 123 >d1lc0a2 d.81.1.4 (A:129-246) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118 Score = 25.6 bits (56), Expect = 6.4 Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 250 LGEVAEKNALKMHATMIAASPPLLYWQKETIQGMER 285 L E E +KM + + LL W +E G++R Sbjct: 61 LEERKEDQYMKMTVQLETQNKGLLSWIEEKGPGLKR 96 >d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 131 Score = 25.4 bits (55), Expect = 6.7 Identities = 5/16 (31%), Positives = 6/16 (37%) Query: 165 YRGFCEWICGTDQNGM 180 Y +C W C M Sbjct: 107 YWYYCNWFCHALHMEM 122 >d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116 Score = 25.4 bits (55), Expect = 6.8 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%) Query: 223 FFTQWTQQISTDLAHIKQAIIDQDFIKLGEVAEKNALKMHATMIAASPP 271 ++ + + D+ + DF L + A + LK M+ P Sbjct: 36 YYALFVDTVPDDVKRLYTEAATSDFAALAQTAHR--LKGVFAMLNLVPG 82 >d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73 Score = 25.1 bits (55), Expect = 9.4 Identities = 4/19 (21%), Positives = 10/19 (52%) Query: 314 IEETIKQFFPEITIIDPLD 332 + + +++ P I I+ L Sbjct: 55 VSKKLREKIPSIQIVQLLS 73 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,302,063 Number of extensions: 58822 Number of successful extensions: 137 Number of sequences better than 10.0: 1 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 15 Length of query: 355 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 269 Effective length of database: 1,226,816 Effective search space: 330013504 Effective search space used: 330013504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.7 bits)