HHsearch alignment for GI: 254781017 and conserved domain: PRK00650
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.84 E-value=3.8e-18 Score=133.99 Aligned_cols=237 Identities=15% Similarity=0.113 Sum_probs=161.6
Q ss_pred EEECCEEEEEE----CCCEE-ECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
Q ss_conf 99717049997----43533-08942898776772899999868984999953644446566120150899999999971
Q gi|254781017|r 9 CVSAPGSLVLM----GEHGV-LHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHI 83 (324)
Q Consensus 9 ~~~aPGKv~L~----GEh~v-~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 83 (324)
T Consensus 2 ~~~aPAKINL~L~V~~kr~DGYH~l~Sl~~~idl~D~i~i~~~~~~~~~~~~~-~~--~~~~---~Nli~kA~~~l~~~~ 75 (288)
T PRK00650 2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIDFGDQLSLSISSRDSLQVINL-CE--LETP---QNSIWKSVALFRDYT 75 (288)
T ss_pred CEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEECC-CC--CCCC---HHHHHHHHHHHHHHH
T ss_conf 56077107325045887999988157999996789899999889996898389-87--8994---569999999999974
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEE
Q ss_conf 87787389998268753548874024566556777640456666014557888877652146887544776629858998
Q gi|254781017|r 84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ 163 (324)
Q Consensus 84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~ 163 (324)
T Consensus 76 ~~~~~~~I~l~KnIPvgAGLGGGSSnAAavL~~Ln~l-~~l~l~~~~L~~ia~~l---------GADVPffl~~~~a~~~ 145 (288)
T PRK00650 76 GITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQH-FQTGLSDEELRSLAEKI---------GMDTPFFFSSGSALGV 145 (288)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC---------CCCCCEEECCCCEEEE
T ss_conf 9998737999957976556761037899999999998-55898999999999872---------9981407538758999
Q ss_pred ECCCEEEEEEC--CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf 52751567304--7775267658417989999888998860823489999999840332078898730486445689999
Q gi|254781017|r 164 MPKYSIEKIDF--IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMN 241 (324)
Q Consensus 164 ~~~~~~~~~~~--~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~ 241 (324)
T Consensus 146 G~GE~i~~l~~~~~~~~vLv~p~~~vsT~~vf~~~~------~~~~~~~~~------------l~-~~~NDLE~~a--~~ 204 (288)
T PRK00650 146 GRGEKILALEESVSDRYVLYFSDQGVLTSDAFAYVQ------PSDCSSRKN------------LE-YTQNDLEKPV--FR 204 (288)
T ss_pred ECCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHCC------CCCCCHHHH------------HH-HCCCCCHHHH--HH
T ss_conf 379677788767765199991998977669875049------100663666------------65-4589788999--98
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH--CCCCEEEECCCCCCCCEEEEEECCCCCHH
Q ss_conf 9899998616787799999999997--19945997268997548999846653268
Q gi|254781017|r 242 RQQGLLETLGVSDSKLSEIVWKLRE--QPHIMASKISGSGLGDCVIALGKGDLNSL 295 (324)
Q Consensus 242 ~~~~~L~~lgvs~~~l~~li~~~~~--~~g~~~aklsGAG~GG~~i~l~~~~~~~~ 295 (324)
T Consensus 205 -----------~~P~i~~ik~~L~~l~a~~~~~~rMSGSGs--tvFa~F~~~~e~d 247 (288)
T PRK00650 205 -----------LRLDLKEKKHWLESLWSPFPVHVGLTGSGA--TLFVRYPRILEED 247 (288)
T ss_pred -----------HCHHHHHHHHHHHHCCCCCCCEEEEECCCC--EEEEEECCCCCCC
T ss_conf -----------597999999999964698776588873130--4999908811018