HHsearch alignment for GI: 254781017 and conserved domain: PRK03188
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.95 E-value=9e-26 Score=182.26 Aligned_cols=268 Identities=17% Similarity=0.168 Sum_probs=193.6
Q ss_pred EEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 999717049997---------43533089428987767728999998689849999536444465661201508999999
Q gi|254781017|r 8 ICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIM 78 (324)
Q Consensus 8 i~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (324)
T Consensus 1 it~~apAKINL~L~V~~kr~dGyH~l----~s~~~~i~l~D~i~i~~~~~~~~~~~~~~~---~~~P~d~~Nlv~kA~~~ 73 (299)
T PRK03188 1 VTVRAPGKVNLHLGVGPLREDGYHEL----ATVFQAVSLYDEVTVTPADDLSLTVSGEGA---DQVPTDESNLAWRAAEL 73 (299)
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCE----EEEEEEECCCEEEEEEECCCCEEEEECCCC---CCCCCCCCCHHHHHHHH
T ss_conf 97975012820403388799998513----589999368719999999998299957873---44889986499999999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
Q ss_conf 99971877873899982687535488740245665567776404566660145578888776521468875447766298
Q gi|254781017|r 79 AINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG 158 (324)
Q Consensus 79 ~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg 158 (324)
T Consensus 74 ~~~~~~~~~~~~I~l~K~IP~gaGLGGGSsdAAa~L~~ln~l-~~l~ls~~eL~~lA~~l---------GsDVPffL~gg 143 (299)
T PRK03188 74 LAEHVGRAPDVHIHIDKGIPVAGGMAGGSADAAAALVACDAL-WGLGLSRDELLALAAEL---------GSDVPFALLGG 143 (299)
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHH---------CCCCCEEEECC
T ss_conf 999729999769999957977677774078999999999997-17997989999999861---------78876376278
Q ss_pred EEEEEECCCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHH
Q ss_conf 58998527515673047--7752676584179899998889988608234899999998403320788987304864456
Q gi|254781017|r 159 LICYQMPKYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVL 236 (324)
Q Consensus 159 ~i~~~~~~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l 236 (324)
T Consensus 144 ~a~~~G~Ge~l~pl~~~~~~~~vlv~P~~~vST~~ay~~ld~~~~~~~~~~--------~~-~~~~~l~~al~~gd~~~l 214 (299)
T PRK03188 144 TALGTGRGEELAPVLARGTFHWVLAFADGGLSTPAVFRELDRLREAGPDPP--------RL-GDPEPLLAALAAGDPAQL 214 (299)
T ss_pred CEEEEECCCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--------CC-CCHHHHHHHHHCCCHHHH
T ss_conf 689997486768887678637999868999472999997776423667765--------66-787999999983999999
Q ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 8999998999986167-8779999999999719945997268997548999846653268999999999977978
Q gi|254781017|r 237 AQAMNRQQGLLETLGV-SDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGID 310 (324)
Q Consensus 237 ~~lm~~~~~~L~~lgv-s~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~ 310 (324)
T Consensus 215 ~~~l~---NdLe~~a~~l~P~i~~i~~~l-~~~Ga~~a~mSGSGs--TvFalf~~~~~A---~~~a~~l~~~g~~ 280 (299)
T PRK03188 215 APLLG---NDLQAAALSLRPELRRTLRAG-EEAGALAGIVSGSGP--TCAFLCASADSA---VDVAAALSGAGVC 280 (299)
T ss_pred HHHHC---CCHHHHHHHCCCHHHHHHHHH-HHCCCCEEEEECCCC--CEEEEECCHHHH---HHHHHHHHHCCCE
T ss_conf 88716---860677877190999999999-967998789978440--102797899999---9999999757930