HHsearch alignment for GI: 254781017 and conserved domain: PRK03188

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.95  E-value=9e-26  Score=182.26  Aligned_cols=268  Identities=17%  Similarity=0.168  Sum_probs=193.6

Q ss_pred             EEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf             999717049997---------43533089428987767728999998689849999536444465661201508999999
Q gi|254781017|r    8 ICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIM   78 (324)
Q Consensus         8 i~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~   78 (324)
T Consensus         1 it~~apAKINL~L~V~~kr~dGyH~l----~s~~~~i~l~D~i~i~~~~~~~~~~~~~~~---~~~P~d~~Nlv~kA~~~   73 (299)
T PRK03188          1 VTVRAPGKVNLHLGVGPLREDGYHEL----ATVFQAVSLYDEVTVTPADDLSLTVSGEGA---DQVPTDESNLAWRAAEL   73 (299)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCCCCE----EEEEEEECCCEEEEEEECCCCEEEEECCCC---CCCCCCCCCHHHHHHHH
T ss_conf             97975012820403388799998513----589999368719999999998299957873---44889986499999999


Q ss_pred             HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
Q ss_conf             99971877873899982687535488740245665567776404566660145578888776521468875447766298
Q gi|254781017|r   79 AINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG  158 (324)
Q Consensus        79 ~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg  158 (324)
T Consensus        74 ~~~~~~~~~~~~I~l~K~IP~gaGLGGGSsdAAa~L~~ln~l-~~l~ls~~eL~~lA~~l---------GsDVPffL~gg  143 (299)
T PRK03188         74 LAEHVGRAPDVHIHIDKGIPVAGGMAGGSADAAAALVACDAL-WGLGLSRDELLALAAEL---------GSDVPFALLGG  143 (299)
T ss_pred             HHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHH---------CCCCCEEEECC
T ss_conf             999729999769999957977677774078999999999997-17997989999999861---------78876376278


Q ss_pred             EEEEEECCCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHH
Q ss_conf             58998527515673047--7752676584179899998889988608234899999998403320788987304864456
Q gi|254781017|r  159 LICYQMPKYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVL  236 (324)
Q Consensus       159 ~i~~~~~~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l  236 (324)
T Consensus       144 ~a~~~G~Ge~l~pl~~~~~~~~vlv~P~~~vST~~ay~~ld~~~~~~~~~~--------~~-~~~~~l~~al~~gd~~~l  214 (299)
T PRK03188        144 TALGTGRGEELAPVLARGTFHWVLAFADGGLSTPAVFRELDRLREAGPDPP--------RL-GDPEPLLAALAAGDPAQL  214 (299)
T ss_pred             CEEEEECCCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--------CC-CCHHHHHHHHHCCCHHHH
T ss_conf             689997486768887678637999868999472999997776423667765--------66-787999999983999999


Q ss_pred             HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             8999998999986167-8779999999999719945997268997548999846653268999999999977978
Q gi|254781017|r  237 AQAMNRQQGLLETLGV-SDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGID  310 (324)
Q Consensus       237 ~~lm~~~~~~L~~lgv-s~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~  310 (324)
T Consensus       215 ~~~l~---NdLe~~a~~l~P~i~~i~~~l-~~~Ga~~a~mSGSGs--TvFalf~~~~~A---~~~a~~l~~~g~~  280 (299)
T PRK03188        215 APLLG---NDLQAAALSLRPELRRTLRAG-EEAGALAGIVSGSGP--TCAFLCASADSA---VDVAAALSGAGVC  280 (299)
T ss_pred             HHHHC---CCHHHHHHHCCCHHHHHHHHH-HHCCCCEEEEECCCC--CEEEEECCHHHH---HHHHHHHHHCCCE
T ss_conf             88716---860677877190999999999-967998789978440--102797899999---9999999757930