HHsearch alignment for GI: 254781017 and conserved domain: PRK04181
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.76 E-value=8.8e-17 Score=125.37 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=146.3
Q ss_pred EECCEEEEEE----CCCEEECCCEEEEEEE-CCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH-
Q ss_conf 9717049997----4353308942898776-772899999868984999953644446566120150899999999971-
Q gi|254781017|r 10 VSAPGSLVLM----GEHGVLHGHAALVFAI-NKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHI- 83 (324)
Q Consensus 10 ~~aPGKv~L~----GEh~v~~G~~ai~~aI-~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~- 83 (324)
T Consensus 1 lKs~AKINL~L~V~~kRd~yH~l~s~~~~i~dl~D~i~i~~~~~~~~~~~~~~---~~~~~----~Nlv~ka~~~l~~~~ 73 (254)
T PRK04181 1 MKSYAKVNIFLKITGKRGNYHELISRFVLVKDLFDEIEFVDDSAKSFEIIGNF---DCPLE----ENIIFKAYQELKSKG 73 (254)
T ss_pred CCCCCEECCCEEECCCCCCCCEEEEEEEEHHHCCEEEEEEECCCCCEEEECCC---CCCCC----CCHHHHHHHHHHHHC
T ss_conf 99765376743577534998732547778200857999998899958997888---88854----159999999998753
Q ss_pred ------CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf ------87787389998268753548874024566556777640456666014557888877652146887544776629
Q gi|254781017|r 84 ------KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHG 157 (324)
Q Consensus 84 ------~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~G 157 (324)
T Consensus 74 ~~~~~~~~~~~~~I~l~KnIP~gAGLGGGSSdAAa~L~~l~~~-~~l~ls~~~L~~ia~~l---------GaDVPffl~g 143 (254)
T PRK04181 74 FSNELIEFFSKLAIEVTKNIPTGAGLGGGSSNAATFLLMANEI-LNLKLSLEELINIGSKI---------GADVAFFISG 143 (254)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC---------CCCCCEEECC
T ss_conf 3234311366417999525766567887466899999999998-28999999999987531---------8982449757
Q ss_pred -CEEEEEECCCEEEEEEC-CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH---HCCCC
Q ss_conf -85899852751567304-77752676584179899998889988608234899999998403320788987---30486
Q gi|254781017|r 158 -GLICYQMPKYSIEKIDF-IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQA---LRNKN 232 (324)
Q Consensus 158 -g~i~~~~~~~~~~~~~~-~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a---l~~~d 232 (324)
T Consensus 144 ~~~a~~~G~Ge~l~~~~~~~~~~~lv~P~~~vST~~vy~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~l~~~~~~~~Nd 219 (254)
T PRK04181 144 YKSANVSGIGEIIEEFEEEILNLEIYTPNIFCSTKAVYQAFRPEFFDFINF-NQAKEWLK-L--SSKELLKNFKNYELND 219 (254)
T ss_pred CCEEEEECCCCEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCH-HHHHHHHH-C--CCHHHHHHHHCCCCCC
T ss_conf 863788757738358777786599994989986799999875540465552-57899885-7--7389999751444567
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEC
Q ss_conf 445689999989999861678779999999999719945997268997548999846
Q gi|254781017|r 233 LKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGK 289 (324)
Q Consensus 233 ~~~l~~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~ 289 (324)
T Consensus 220 Le~~a---------~-~---~~P~i~~il~----~----~~~mSGSGs--t~Fal~r 253 (254)
T PRK04181 220 LLKPA---------L-L---LYPALKDYLG----K----DWFFSGSGS--SFFRVKR 253 (254)
T ss_pred CHHHH---------H-H---HHHHHHHHHC----C----CCEEECCCH--HHEEEEE
T ss_conf 39999---------9-9---6799999872----1----909973072--1458973