HHsearch alignment for GI: 254781017 and conserved domain: PRK04943
>PRK04943 consensus.
Probab=99.88 E-value=1.8e-20 Score=148.74 Aligned_cols=262 Identities=13% Similarity=0.106 Sum_probs=173.9
Q ss_pred CCCEEEEECCEEEEEEC----CCEE-ECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 88789997170499974----3533-089428987767728999998689849999536444465661201508999999
Q gi|254781017|r 4 CLHKICVSAPGSLVLMG----EHGV-LHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIM 78 (324)
Q Consensus 4 ~~~ki~~~aPGKv~L~G----Eh~v-~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (324)
T Consensus 2 ~~~~~~~~aPAKINL~L~V~~kr~DGYH~i~S~~~~idl~D~l~i~~~~~~~i~~~~~~~~i~~----~-~Nli~kA~~~ 76 (288)
T PRK04943 2 ITGTTRWPSPAKLNLFLYINGRTENGYHELQTLFQFLDHGDELTITANNSGNITLSPAIEGVPL----E-DNLIWKAATA 76 (288)
T ss_pred CCCCEEEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEEECCCCCCCC----C-CCHHHHHHHH
T ss_conf 7787487131168234023887999987157899981675099999989998898178678987----6-7499999999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
Q ss_conf 99971877873899982687535488740245665567776404566660145578888776521468875447766298
Q gi|254781017|r 79 AINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG 158 (324)
Q Consensus 79 ~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg 158 (324)
T Consensus 77 l~~~~~~~~~~~I~l~KnIPv~AGLGGGSSnAAa~L~~Ln~l-~~l~ls~~~l~~ia~~l---------GADVPffl~~~ 146 (288)
T PRK04943 77 LQNAAQCSLGAHIELHKILPMGGGIGGGSSNAATTLVALNYL-WQTGLSDDELAEIGLAL---------GADVPVFVRGF 146 (288)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHC---------CCCEEEEECCC
T ss_conf 999769998808999971787578887620699999999998-47999989999988743---------99857686177
Q ss_pred EEEEEECCCEEEEEECCCC-CCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHH
Q ss_conf 5899852751567304777-526765841798999988899886082348999999984033207889873048644568
Q gi|254781017|r 159 LICYQMPKYSIEKIDFIFP-IHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLA 237 (324)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~-l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~ 237 (324)
T Consensus 147 ~a~~~G~GE~l~~~~~~~~~~lLv~P~~~iST~~vf~~~~~~~~-~~~-~~~------------~~~~~~~~~NDLE~~~ 212 (288)
T PRK04943 147 AAFAEGVGEKLSPATPEEKWYLVVRPNVSIATVDIFTHPDLTRN-TPK-RDL------------ETLLNTPYVNDCEKIV 212 (288)
T ss_pred CEEEECCCCEEEECCCCCCEEEEECCCCCCCCHHHHCCCHHCCC-CCC-CCH------------HHHHHCHHCCCCHHHH
T ss_conf 68998688574266777767999879999727788059300137-652-179------------9987360047857999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 9999989999861678779999999999719945997268997548999846653268999999999977978999414
Q gi|254781017|r 238 QAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITP 316 (324)
Q Consensus 238 ~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 316 (324)
T Consensus 213 ~~~-------------~PeI~~~~~~l~~~~---~~~MSGSGs--tvFglf~s~~~A~---~~~~~l~-~~~~~f~~kg 269 (288)
T PRK04943 213 RML-------------YPEVDKQLSWLLQYA---PSRLTGTGS--CVFAEFSSRSEAE---AILAQLS-DNVSAFVAQG 269 (288)
T ss_pred HHH-------------CHHHHHHHHHHHCCC---CCEEECHHH--EEEEEECCHHHHH---HHHHHCC-CCCCEEEECC
T ss_conf 986-------------889999999985659---871326405--5889989999999---9998689-7672899368