HHsearch alignment for GI: 254781017 and conserved domain: TIGR00154
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=99.79 E-value=1.2e-18 Score=137.23 Aligned_cols=265 Identities=19% Similarity=0.243 Sum_probs=173.5
Q ss_pred CCEEEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECC-CCEEEEEECCCCCCCCCCHHHCCCHHH
Q ss_conf 878999717049997---------4353308942898776772899999868-984999953644446566120150899
Q gi|254781017|r 5 LHKICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRK-DRLINIDSSLGQYCGSLDLAMFHPSFS 74 (324)
Q Consensus 5 ~~ki~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~ 74 (324)
T Consensus 1 ~~~~~~~~PAK~NLFL~I~~krpdGYH~L~----~~~~~~~~gD~i~i~~~~q~~~i~l~~~~~~~~~e~~-NL~yrAa~ 75 (322)
T TIGR00154 1 MMRIVFPAPAKINLFLYILGKRPDGYHELQ----MLMQFIDLGDKIEISVRSQDDDIRLSKGDSDVPDEER-NLIYRAAK 75 (322)
T ss_pred CCCCEECCCCCCCCHHHCCCCCCCCCEEHH----HHHHHHHCCCEEEEEEECCCCCEEECCCCCCCCCCHH-HHHHHHHH
T ss_conf 986100488732111310167998523133----3334562167379998535784787377898886201-06999999
Q ss_pred HHHHHHHH-------HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999997-------18778738999826875354887402456655677764045666601455788887765214688
Q gi|254781017|r 75 FIIMAINH-------IKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISS 147 (324)
Q Consensus 75 ~i~~~l~~-------~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~s 147 (324)
T Consensus 76 Ll~~~~~~~nfsH~~~~~~~G~~I~~~K~iP~~aGLgGGSsdAA~~L~~LN~L-W~~~LS~~EL~~lG~~l--------- 145 (322)
T TIGR00154 76 LLKNKANSKNFSHSVIKVKKGVNIEITKVIPMAAGLGGGSSDAAAVLVGLNQL-WNLNLSLEELAELGATL--------- 145 (322)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHH---------
T ss_conf 99985100233343012567614898641466577654045799999987677-62168878999998874---------
Q ss_pred CHHHHHHHCC-CEEEEEECCCEEEEEE--CCCCCCE-EEC-CCCCCHHHHHHHHH-HHHHHC-CCH--HHHHHHHHHHHC
Q ss_conf 7544776629-8589985275156730--4777526-765-84179899998889-988608-234--899999998403
Q gi|254781017|r 148 GIDLAASIHG-GLICYQMPKYSIEKID--FIFPIHL-IYS-GYKTPTAQVLKKIS-YIEIEY-PEI--NEINQKIYALMG 218 (324)
Q Consensus 148 G~D~~a~~~G-g~i~~~~~~~~~~~~~--~~~~l~l-~~t-g~~~~T~~~v~~v~-~~~~~~-~~~--~~~~~~~~~~~~ 218 (324)
T Consensus 146 GaDvpffv~GY~~A~AtG~GE~i~~~~e~P~e~W~~~~kP~~~~~ST~~vyq~~~qkfGknyLp~~~~~~~~~ktiha-G 224 (322)
T TIGR00154 146 GADVPFFVSGYGTAFATGRGEIITPLEEEPPEKWVVIAKPRSVSVSTAVVYQAYKQKFGKNYLPRNTPKRAKEKTIHA-G 224 (322)
T ss_pred CCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHC-C
T ss_conf 698307863633121123442505788898740388972798532738987124553152247877765677632002-5
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCEEEE-CCCCCCCCEEEEEECCCCCHH
Q ss_conf 3207889873048644568999998999986167-8779999999999719945997-268997548999846653268
Q gi|254781017|r 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETLGV-SDSKLSEIVWKLREQPHIMASK-ISGSGLGDCVIALGKGDLNSL 295 (324)
Q Consensus 219 ~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgv-s~~~l~~li~~~~~~~g~~~ak-lsGAG~GG~~i~l~~~~~~~~ 295 (324)
T Consensus 225 ~~----l~~i~~---~~~~~~~~~~~NDlEkv~l~~~~~V~~~l~~l~~~-g~~~~~f~sGsG~--~vF~l~~~e~ea~ 293 (322)
T TIGR00154 225 GL----LKKIEE---KLLQLLDSNLKNDLEKVALDAHTEVAQALNWLLEY-GLAPERFLSGSGP--CVFALFDEEAEAE 293 (322)
T ss_pred CH----HHHHHH---HHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHH-CCCCEEEEECCCH--HHHHCCHHHHHHH
T ss_conf 10----245667---65776654047720200001576189999999860-5884257644854--6642151146789