HHsearch alignment for GI: 254781017 and conserved domain: TIGR00549

>TIGR00549 mevalon_kin mevalonate kinase; InterPro: IPR006205 Mevalonate kinase (2.7.1.36 from EC) is well-characterised among the Eukaryotes, where it plays a role in the synthesis of isopentanyl pyrophosphate, a common intermediate for a number of pathways including cholesterol biosynthesis. It is also involved in mevalonate catabolism. Close homologs are found in the Archaea. A bacterial example is found in the Lyme disease spirochete Borrelia burgdorferi, but is not necessarily the same biosynthetic enzyme.; GO: 0004496 mevalonate kinase activity, 0005524 ATP binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=438.33  Aligned_cols=271  Identities=30%  Similarity=0.460  Sum_probs=230.4

Q ss_pred             CCEEEEEECCCEEECCCEEEEEEECCEEEEEEEE-------------------------CCCCE--EE---EEECCCCCC
Q ss_conf             1704999743533089428987767728999998-------------------------68984--99---995364444
Q gi|254781017|r   12 APGSLVLMGEHGVLHGHAALVFAINKRVILYLTL-------------------------RKDRL--IN---IDSSLGQYC   61 (324)
Q Consensus        12 aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~-------------------------~~~~~--i~---i~~~~~~~~   61 (324)
T Consensus         1 ApgK~IL~GEHAVVYG~PAiA~~i~~~~~~~~~~~~S~~~~~Le~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (345)
T TIGR00549         1 APGKIILFGEHAVVYGEPAIAAAIDLRTTVTVIELDSAVAFRLEALAKDIILTLEDLARNSDSILYSLSSKIESELGRGS   80 (345)
T ss_pred             CCCEEEEECCCEEECCCCCEEEEECCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
T ss_conf             97405762360011278504666336068998636732456665405644443387620254034442012110015676


Q ss_pred             CCCCHHH-------------------CCCHHHHHHH-HHHHHCC---C--CCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             6566120-------------------1508999999-9997187---7--873899982687535488740245665567
Q gi|254781017|r   62 GSLDLAM-------------------FHPSFSFIIM-AINHIKP---S--CGFDLKVISQLDSQLGLGSSAAITVAITAA  116 (324)
Q Consensus        62 ~~~~~~~-------------------~~~~~~~i~~-~l~~~~~---~--~g~~i~i~s~iP~g~GLGSSaa~~va~~~a  116 (324)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~p~~~~i~S~iP~g~GLGSSAAv~vA~~~a  160 (345)
T TIGR00549        81 LDDAPQELDGLVSELVEPADKQLTPSLSESLSYIAAAALSKLSELNEPPKTPLEIEIESEIPPGRGLGSSAAVAVALIRA  160 (345)
T ss_pred             CCCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             44013765122443166556530389999999999999999750267554872799850536655563479999999999


Q ss_pred             HHHHHCC---------CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCC--EEEEEECC-CCCCEEECC
Q ss_conf             7764045---------66660145578888776521468875447766298589985275--15673047-775267658
Q gi|254781017|r  117 LLTLQYH---------KEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKY--SIEKIDFI-FPIHLIYSG  184 (324)
Q Consensus       117 l~~~~~~---------~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~--~~~~~~~~-~~l~l~~tg  184 (324)
T Consensus       161 l~~~-~g~~~n~~s~L~~~~~~~~~~~a~~~E~~~HG~pSG~D~~~~~~g~~~~f~k~~~~~~~~~~~~~~~~~~i~dtg  239 (345)
T TIGR00549       161 LADY-FGIRSNDLSKLSELSKEELAKLANEAEKIVHGKPSGIDTATSTYGGPVLFEKGEGVEETKLISLDALYLVIADTG  239 (345)
T ss_pred             HHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCEEEECCCCCCEEEEEECC
T ss_conf             9987-044668621024689889999998877651799853122123448668987688873144027899608998348


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             417989999888998860823489999999840332078898730486-------4456899999899998616787799
Q gi|254781017|r  185 YKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKN-------LKVLAQAMNRQQGLLETLGVSDSKL  257 (324)
Q Consensus       185 ~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d-------~~~l~~lm~~~~~~L~~lgvs~~~l  257 (324)
T Consensus       240 ~~~~T~~~V~~V~~l~~~~p---~~~~~~~~~~g~l~~~a~~a~~~~d~~~~~ek~~~lg~lm~~nq~lL~~lGVS~~~l  316 (345)
T TIGR00549       240 VSGSTKEAVAKVRQLLERFP---ELIDAIMDAIGELTKEAKAALEDGDEVEDSEKVESLGELMNINQGLLKALGVSTPKL  316 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             77748999999999875171---689999999999999999999718831035589999999999998888707985799


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCEEEEE
Q ss_conf             999999997199459972689975489998
Q gi|254781017|r  258 SEIVWKLREQPHIMASKISGSGLGDCVIAL  287 (324)
Q Consensus       258 ~~li~~~~~~~g~~~aklsGAG~GG~~i~l  287 (324)
T Consensus       317 d~l~~~~~~-~GAlGaKlTGaG~GGc~iaL  345 (345)
T TIGR00549       317 DQLVELARK-AGALGAKLTGAGGGGCMIAL  345 (345)
T ss_pred             HHHHHHHHH-CCCCEEEECCCCCCCEEEEC
T ss_conf             999999986-79746310157776536539