HHsearch alignment for GI: 254781017 and conserved domain: TIGR00549
>TIGR00549 mevalon_kin mevalonate kinase; InterPro: IPR006205 Mevalonate kinase (2.7.1.36 from EC) is well-characterised among the Eukaryotes, where it plays a role in the synthesis of isopentanyl pyrophosphate, a common intermediate for a number of pathways including cholesterol biosynthesis. It is also involved in mevalonate catabolism. Close homologs are found in the Archaea. A bacterial example is found in the Lyme disease spirochete Borrelia burgdorferi, but is not necessarily the same biosynthetic enzyme.; GO: 0004496 mevalonate kinase activity, 0005524 ATP binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=438.33 Aligned_cols=271 Identities=30% Similarity=0.460 Sum_probs=230.4
Q ss_pred CCEEEEEECCCEEECCCEEEEEEECCEEEEEEEE-------------------------CCCCE--EE---EEECCCCCC
Q ss_conf 1704999743533089428987767728999998-------------------------68984--99---995364444
Q gi|254781017|r 12 APGSLVLMGEHGVLHGHAALVFAINKRVILYLTL-------------------------RKDRL--IN---IDSSLGQYC 61 (324)
Q Consensus 12 aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~-------------------------~~~~~--i~---i~~~~~~~~ 61 (324)
T Consensus 1 ApgK~IL~GEHAVVYG~PAiA~~i~~~~~~~~~~~~S~~~~~Le~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (345)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAAIDLRTTVTVIELDSAVAFRLEALAKDIILTLEDLARNSDSILYSLSSKIESELGRGS 80 (345)
T ss_pred CCCEEEEECCCEEECCCCCEEEEECCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 97405762360011278504666336068998636732456665405644443387620254034442012110015676
Q ss_pred CCCCHHH-------------------CCCHHHHHHH-HHHHHCC---C--CCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6566120-------------------1508999999-9997187---7--873899982687535488740245665567
Q gi|254781017|r 62 GSLDLAM-------------------FHPSFSFIIM-AINHIKP---S--CGFDLKVISQLDSQLGLGSSAAITVAITAA 116 (324)
Q Consensus 62 ~~~~~~~-------------------~~~~~~~i~~-~l~~~~~---~--~g~~i~i~s~iP~g~GLGSSaa~~va~~~a 116 (324)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~p~~~~i~S~iP~g~GLGSSAAv~vA~~~a 160 (345)
T TIGR00549 81 LDDAPQELDGLVSELVEPADKQLTPSLSESLSYIAAAALSKLSELNEPPKTPLEIEIESEIPPGRGLGSSAAVAVALIRA 160 (345)
T ss_pred CCCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 44013765122443166556530389999999999999999750267554872799850536655563479999999999
Q ss_pred HHHHHCC---------CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEEECCC--EEEEEECC-CCCCEEECC
Q ss_conf 7764045---------66660145578888776521468875447766298589985275--15673047-775267658
Q gi|254781017|r 117 LLTLQYH---------KEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKY--SIEKIDFI-FPIHLIYSG 184 (324)
Q Consensus 117 l~~~~~~---------~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~~~~~--~~~~~~~~-~~l~l~~tg 184 (324)
T Consensus 161 l~~~-~g~~~n~~s~L~~~~~~~~~~~a~~~E~~~HG~pSG~D~~~~~~g~~~~f~k~~~~~~~~~~~~~~~~~~i~dtg 239 (345)
T TIGR00549 161 LADY-FGIRSNDLSKLSELSKEELAKLANEAEKIVHGKPSGIDTATSTYGGPVLFEKGEGVEETKLISLDALYLVIADTG 239 (345)
T ss_pred HHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCEEEECCCCCCEEEEEECC
T ss_conf 9987-044668621024689889999998877651799853122123448668987688873144027899608998348
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 417989999888998860823489999999840332078898730486-------4456899999899998616787799
Q gi|254781017|r 185 YKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKN-------LKVLAQAMNRQQGLLETLGVSDSKL 257 (324)
Q Consensus 185 ~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d-------~~~l~~lm~~~~~~L~~lgvs~~~l 257 (324)
T Consensus 240 ~~~~T~~~V~~V~~l~~~~p---~~~~~~~~~~g~l~~~a~~a~~~~d~~~~~ek~~~lg~lm~~nq~lL~~lGVS~~~l 316 (345)
T TIGR00549 240 VSGSTKEAVAKVRQLLERFP---ELIDAIMDAIGELTKEAKAALEDGDEVEDSEKVESLGELMNINQGLLKALGVSTPKL 316 (345)
T ss_pred CCCCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 77748999999999875171---689999999999999999999718831035589999999999998888707985799
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCEEEEE
Q ss_conf 999999997199459972689975489998
Q gi|254781017|r 258 SEIVWKLREQPHIMASKISGSGLGDCVIAL 287 (324)
Q Consensus 258 ~~li~~~~~~~g~~~aklsGAG~GG~~i~l 287 (324)
T Consensus 317 d~l~~~~~~-~GAlGaKlTGaG~GGc~iaL 345 (345)
T TIGR00549 317 DQLVELARK-AGALGAKLTGAGGGGCMIAL 345 (345)
T ss_pred HHHHHHHHH-CCCCEEEECCCCCCCEEEEC
T ss_conf 999999986-79746310157776536539