HHsearch alignment for GI: 254781017 and conserved domain: TIGR01920

>TIGR01920 Shik_kin_archae shikimate kinase; InterPro: IPR010189 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the shikimate pathway of aromatic amino acids biosynthesis. It converts shikimate to shikimate 3-phosphate (3-phosphoshikimate). This part of the pathway leads to the biosynthesis of chorismate, the precursor of aromatic amino acids, folates, ubiquinones, and other aromatic compounds. The shikimate pathway links metabolism of carbohydrates to biosynthesis of the aromatic amino acids phenylalanine, tyrosine, tryptophan and their derivatives in microorganisms and plants . In a sequence of seven enzymatic reactions, D-erythrose 4-phosphate (E4P), an intermediate of the pentose phosphate pathway and phosphoenol pyruvate (PEP), a glycolytic intermediate, are converted to chorismate. The shikimate pathway is present in bacteria, archaea, fungi and plants. The absence of the shikimate pathway in animals makes it an attractive target for non-toxic herbicides, antimicrobial and antifungal agents. Shikimate kinase enzymes present an example of convergent evolution via enzyme recruitment from an unrelated group. This group represents shikimate kinases of the archaeal type. Members have no sequence similarity with the typical form of shikimate kinase (PIRSF000702 from PIRSF, IPR000623 from INTERPRO) found in bacteria and eukaryotes, but are instead distantly related to homoserine kinases, which belong to the GHMP kinase domain superfamily (GHMP = galactose, homoserine, mevalonate, and phosphomevalonate) . All known non-archaeal shikimate kinases (the typical form) belong to the non-homologous, structurally unrelated nucleoside monophosphate (NMP) kinase domain superfamily . Nomenclature note: the name AroK is used for non-homologous shikimate kinases of both the archaeal and bacterial types. ; GO: 0004765 shikimate kinase activity, 0009073 aromatic amino acid family biosynthetic process, 0005737 cytoplasm.
Probab=99.76  E-value=9.9e-16  Score=118.71  Aligned_cols=242  Identities=18%  Similarity=0.146  Sum_probs=160.2

Q ss_pred             EEEEECCEEEEEEEECCCCE--EEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCH
Q ss_conf             98776772899999868984--9999536444465661201508999999999718778738999826875354887402
Q gi|254781017|r   31 LVFAINKRVILYLTLRKDRL--INIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAA  108 (324)
Q Consensus        31 i~~aI~~~~~~~~~~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa  108 (324)
T Consensus        18 ~AfgidL~v~a~V~~~~d~~~~v~~~~~~--~~-~~---~~~~~~~~~~~~~~~~g~~~~~~v~~~seiP~g~GLKSSSA   91 (273)
T TIGR01920        18 GAFGIDLKVEAKVRLSDDGEAKVSLKVRG--NP-EL---DPRLIERILTALIEKFGIVEGLEVEVESEIPLGSGLKSSSA   91 (273)
T ss_pred             EEECCCCEEEEEEEEECCCCCCEEEEECC--CC-CC---CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHH
T ss_conf             12126860799999706885431477667--65-47---97899999999898538886248999617678866437899


Q ss_pred             HHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHCCCCCC-H-HHHHHHCCCEEEEEECCCEEEEE-ECCCC-CCEEE
Q ss_conf             456655677764045--6666014557888877652146887-5-44776629858998527515673-04777-52676
Q gi|254781017|r  109 ITVAITAALLTLQYH--KEPSPDEILTTAHAIVLKVQGISSG-I-DLAASIHGGLICYQMPKYSIEKI-DFIFP-IHLIY  182 (324)
Q Consensus       109 ~~va~~~al~~~~~~--~~~~~~~i~~lA~~~E~~~~g~~sG-~-D~~a~~~Gg~i~~~~~~~~~~~~-~~~~~-l~l~~  182 (324)
T Consensus        92 ~~nAlv~A~~~~~-gva~~~~~~~~~~l~a~~S~~AG~s~TGAfDDa~AS~~GG~~~TDN~~~~ilk~~~~~~~l~~~vl  170 (273)
T TIGR01920        92 LVNALVLAVLKAK-GVAEEIDDIDILRLGAELSKEAGVSVTGAFDDAAASYLGGIVITDNRKMKILKRDKLEGNLTAVVL  170 (273)
T ss_pred             HHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCEEEECCEEEEEEECCCCCCCEEEEE
T ss_conf             9999999999861-234217733689999998886685153058899998608200521430246552167898658999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHH
Q ss_conf             58417989999888998860823489999999840332078898730486445689999989999-86167877999999
Q gi|254781017|r  183 SGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLL-ETLGVSDSKLSEIV  261 (324)
Q Consensus       183 tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L-~~lgvs~~~l~~li  261 (324)
T Consensus       171 ~P~~~~~~~~--~~~~~~---------------~~~~~~e~a~~~A~~G~y~~---Am~lNG~~y~~~Lgyp~e~~----  226 (273)
T TIGR01920       171 VPKEERRENV--DLNRLR---------------KISPVVEEAFKLALKGEYLK---AMVLNGVAYATALGYPLEPA----  226 (273)
T ss_pred             ECCCCCCCCC--CHHHHH---------------HHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHCCCHHHH----
T ss_conf             7687667676--888888---------------66689999999964688078---99999999998818986489----


Q ss_pred             HHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             9999719945997268997548999846653268999999999977978
Q gi|254781017|r  262 WKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGID  310 (324)
Q Consensus       262 ~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~  310 (324)
T Consensus       227 ~~al-~~GA~~aG~SG~GP--sy~A~~~~pe~----~~~~~~~~~~G~G  268 (273)
T TIGR01920       227 SKAL-EKGAAVAGLSGKGP--SYFALTEEPEE----EEVAEALEEFGFG  268 (273)
T ss_pred             HHHH-HCCCEEEEECCCCC--EEEEEECCCCH----HHHHHHHHHCCCE
T ss_conf             9997-38943886305755--68997306864----8999999746970