HHsearch results for GI: 254781017 and protein with PDBid: 2v8p_A
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.93 E-value=9.1e-24 Score=168.21 Aligned_cols=259 Identities=15% Similarity=0.142 Sum_probs=172.7
Q ss_pred CCCCCEEEEECCEEEEEE---------CCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCH
Q ss_conf 988878999717049997---------43533089428987767728999998689849999536444465661201508
Q gi|254781017|r 2 GQCLHKICVSAPGSLVLM---------GEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPS 72 (324)
Q Consensus 2 ~~~~~ki~~~aPGKv~L~---------GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 72 (324)
|-.|.+ ++||+||||+ |.|-. ..+-.+||++..+++++.. +.+.... . ++ ...+-.
T Consensus 1 ~~~mi~--~~apAKiNL~L~i~~kr~dGyH~i----~s~~~~i~l~D~i~i~~~~---~~~~~~~-~----~~-~~~Nli 65 (271)
T 2v8p_A 1 GSHMIK--VLSPAKINLGLWVLGRLPSGYHEI----LTLYQEIPFYDEIYIREGV---LRVETNI-G----IP-QEENLV 65 (271)
T ss_dssp -CCCEE--EEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEESS---CEEEESS-C----CC-TTTCHH
T ss_pred CCCEEE--EEEEEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECC---CEEECCC-C----CC-CCHHHH
T ss_conf 995199--984168975455178589997725----7899992687399999687---0776888-9----99-631199
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999999971877873899982687535488740245665567776404566660145578888776521468875447
Q gi|254781017|r 73 FSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLA 152 (324)
Q Consensus 73 ~~~i~~~l~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~ 152 (324)
.+......+......|++|.++++||+++|||||||.++|.+.+++.+ ++.+++.+++.++|..+ |.|+.
T Consensus 66 ~ka~~~~~~~~~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l-~~~~ls~~el~~la~~i---------g~dvp 135 (271)
T 2v8p_A 66 YKGLREFERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNEL-LGSPLSEEELRELVGSI---------SADAP 135 (271)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHH-TTCCSCHHHHHHHHHHH---------CTTTG
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHCCC---------CCCCC
T ss_conf 999999779759998748999769988787774327899999999985-06774236677653024---------78878
Q ss_pred HHHCCCEEEEEECCCEEEEEECC--CCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 76629858998527515673047--7752676584179899998889988608234899999998403320788987304
Q gi|254781017|r 153 ASIHGGLICYQMPKYSIEKIDFI--FPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRN 230 (324)
Q Consensus 153 a~~~Gg~i~~~~~~~~~~~~~~~--~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~ 230 (324)
.+.+|+..+.......+.+++.+ ..+++++++...+|+++.+.++ .......+.. .....++..
T Consensus 136 ~fl~g~~~~~~g~Ge~i~~~~~~~~~~~vlv~P~~~~sT~~a~~~l~---~~~~~~~~~~-----------~~~~~~l~~ 201 (271)
T 2v8p_A 136 FFLLGKSAIGRGKGEVLEPVETEISGKITLVIPQVSSSTGRVYSSLR---EEHFVTPEYA-----------EEKIQRIIS 201 (271)
T ss_dssp GGGTCSEEEEETTTTEEEECCCCCCSEEEEEECSSCCCHHHHHHTCC---TTSCCCHHHH-----------HHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHH---HHHCCCCHHH-----------HHHHHHHHH
T ss_conf 43368760004885379997615775279981565775178997651---3303452005-----------889998875
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 86445689999989999861678779999999999719945997268997548999846653268999999999977978
Q gi|254781017|r 231 KNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGID 310 (324)
Q Consensus 231 ~d~~~l~~lm~~~~~~L~~lgvs~~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~ 310 (324)
++++.+...+... ..++ .|+++++.+.+ +.. ++++.|||+|+ +++++++.+.+.+.. ....|++
T Consensus 202 ~~~~~~~n~l~~~---~~~l---~P~i~~i~~~l-~~~-~~~~~lSGSGs--tvfal~~~~~~~~~a------~k~~~w~ 265 (271)
T 2v8p_A 202 GEVEEIENVLGDI---AREL---YPEINEVYRFV-EYL-GFKPFVSGSGS--TVYFFGGASEELKKA------AKMRGWK 265 (271)
T ss_dssp TCGGGCCBHHHHH---HHHH---CHHHHHHHHHH-HHT-TCCCEECTTSS--CEEESSCCCHHHHHH------HHHHTCE
T ss_pred HHHHHHHHHHHHH---HHHH---CHHHHHHHHHH-HHC-CCCEEEECCCH--HHEEEECCHHHHHHH------HHCCCCE
T ss_conf 3189999888889---9986---90999999999-838-99889978443--216898999999998------7407998
Q ss_pred EEEEE
Q ss_conf 99941
Q gi|254781017|r 311 IVPIT 315 (324)
Q Consensus 311 ~~~~~ 315 (324)
++.++
T Consensus 266 v~~~~ 270 (271)
T 2v8p_A 266 VVELE 270 (271)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99988