HHsearch results for GI: 254781017 and protein with PDBid: 3k17_A
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=0 Score=374.08 Aligned_cols=303 Identities=24% Similarity=0.290 Sum_probs=244.0
Q ss_pred CEEEEECCEEEEEECCCEEEC-CCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCH-----HHCCC----HHHH
Q ss_conf 789997170499974353308-9428987767728999998689849999536444465661-----20150----8999
Q gi|254781017|r 6 HKICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDL-----AMFHP----SFSF 75 (324)
Q Consensus 6 ~ki~~~aPGKv~L~GEh~v~~-G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-----~~~~~----~~~~ 75 (324)
+||.+||||||+|+|||+||+ |++||++|||+|+++++++++++.+.+.+...+.....+. ..+.+ .+..
T Consensus 5 ~~i~v~aPGKv~L~GEh~v~~~G~~al~~AI~~~~~v~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (365)
T 3k17_A 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINI 84 (365)
T ss_dssp CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEECTTCSSCBCCCTTSCCCCSCGGGHHHHHHHHH
T ss_pred CEEEEEEEEEEEEEECCEEECCCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 87999996599999868981599669999981509999999899879999668870588536556666511689999999
Q ss_pred HHHHHHHHC-CCCCEEEEEECCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999999718-77873899982687----5354887402456655677764045666601455788887765214688754
Q gi|254781017|r 76 IIMAINHIK-PSCGFDLKVISQLD----SQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGID 150 (324)
Q Consensus 76 i~~~l~~~~-~~~g~~i~i~s~iP----~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D 150 (324)
+...+.... ...|+++.|+|++| .|+|||||||++||++.|++.+ ++..+++.+++++|+.+|+.++|.+||+|
T Consensus 85 ~~~~l~~~~~~~~g~~i~i~s~ip~~~g~gsGLgSSaA~~va~~~al~~~-~~~~~~~~~l~~~a~~~E~~~~g~~sG~D 163 (365)
T 3k17_A 85 ATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTK-FYPEISMLKKFKLAALSHLVVQGNGSCGD 163 (365)
T ss_dssp HHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHSSCCSHH
T ss_pred HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999980999898359998752688886764679999999999999985-05432178888999999987446986021
Q ss_pred HHHHHCCCEEEEEECCCE-----------------------EEEEE-CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 477662985899852751-----------------------56730-477752676584179899998889988608234
Q gi|254781017|r 151 LAASIHGGLICYQMPKYS-----------------------IEKID-FIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEI 206 (324)
Q Consensus 151 ~~a~~~Gg~i~~~~~~~~-----------------------~~~~~-~~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~ 206 (324)
+++|+|||++.|+..+.. +..++ ....+++++|+.+++|+++++.|...+.+.+.
T Consensus 164 ~~~s~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~tg~~~~t~~~v~~v~~~~~~~~~- 242 (365)
T 3k17_A 164 IASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSK- 242 (365)
T ss_dssp HHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSSEEEEEECSCCCCHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHCHH-
T ss_conf 4888739839998178401022113466302323786235577654134200675169964439999999986542648-
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 8999999984033207889873048644568999998999986------1678779999999999719945997268997
Q gi|254781017|r 207 NEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLET------LGVSDSKLSEIVWKLREQPHIMASKISGSGL 280 (324)
Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~------lgvs~~~l~~li~~~~~~~g~~~aklsGAG~ 280 (324)
....+...+.+++.++.++|+++|++.|+++|+++|..|++ +++|+|+++++++.+.+. |+ ++|+|||||
T Consensus 243 --~~~~~~~~~~~~~~~~~~aL~~~d~~~~g~lm~~~~~~l~~~~~~~~~~vs~~~l~~lv~~a~~~-g~-~ak~tGAG~ 318 (365)
T 3k17_A 243 --NYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAENM-GG-AGKSSGSGG 318 (365)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHT-TS-EEEECTTCS
T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-CE-EEEECCCCC
T ss_conf --77657888878899999976316899999999999999996222158765899999999999867-90-899846065
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 5489998466532689999999999779789994145
Q gi|254781017|r 281 GDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPS 317 (324)
Q Consensus 281 GG~~i~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 317 (324)
|||+++|++++. ..+++.++|.+.|+..+++.+.
T Consensus 319 Ggc~~al~~~~~---~~~~l~~~~~~~g~~~l~~~~~ 352 (365)
T 3k17_A 319 GDCGIAFSKTKE---LAEKLVNEWEKLGIKHLPFHTG 352 (365)
T ss_dssp SSEEEEEESSHH---HHHHHHHHHHHTTCEECCCCBC
T ss_pred CCEEEEEECCHH---HHHHHHHHHHHCCCEEEEEEEC
T ss_conf 058999988889---9999999999879976212640