HHSEARCH alignment of GI: 254781017 and SCOP domain: d1kkha1

Alignment
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=1.5e-34  Score=234.94  Aligned_cols=163  Identities=25%  Similarity=0.366  Sum_probs=133.9

Q ss_pred             CCEEEEECCEEEEEECCCEEECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCH-------HHCCCHHHH--
Q ss_conf             87899971704999743533089428987767728999998689849999536444465661-------201508999--
Q gi|254781017|r    5 LHKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDL-------AMFHPSFSF--   75 (324)
Q Consensus         5 ~~ki~~~aPGKv~L~GEh~v~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~~~~~~~~--   75 (324)
                      =.+|.+|||||++|+|||+||+|++||++|||+++++++++++++.+.+.+...+.......       ......+++  
T Consensus         3 ~~~~~~~aPgkv~L~GEh~~~~G~~~l~~aI~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T d1kkha1           3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCL   82 (180)
T ss_dssp             TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGGGCCGGGSGGGHHHH
T ss_pred             CCEEEEECCEEEEEECCCEEECCCEEEEEEEECEEEEEEEECCCCCCCEEEECCCCEEEECCHHCCCCCCCCHHHHHHHH
T ss_conf             97699983879999746868729879999970879999998898775214403464145420011235832003489999


Q ss_pred             --HHHHHHHHC--CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             --999999718--7787389998268753548874024566556777640456666014557888877652146887544
Q gi|254781017|r   76 --IIMAINHIK--PSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDL  151 (324)
Q Consensus        76 --i~~~l~~~~--~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~  151 (324)
                        +...++++.  ...|++++++|++|.|+|||||||++||++.+|..+ ++.++++++++++|+++|+.+||++||+|+
T Consensus        83 ~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~-~~~~l~~~~l~~la~~~E~~~~g~~sg~D~  161 (180)
T d1kkha1          83 CAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGF-YNKELKDDEIAKLGYMVEKEIQGKASITDT  161 (180)
T ss_dssp             HHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHSSSCCSHHH
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             9999999985889998779999415010037565400399999999998-576799899999999999986899878999


Q ss_pred             HHHHCCCEEEEEECCCE
Q ss_conf             77662985899852751
Q gi|254781017|r  152 AASIHGGLICYQMPKYS  168 (324)
Q Consensus       152 ~a~~~Gg~i~~~~~~~~  168 (324)
                      ++|+|||+++|++++..
T Consensus       162 ~~~~~Gg~i~~~~~~~~  178 (180)
T d1kkha1         162 STITYKGILEIKNNKFR  178 (180)
T ss_dssp             HHHHHCSEEEESSSCEE
T ss_pred             HHHHHCCEEEEECCCEE
T ss_conf             99981997999579666


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]