HHSEARCH alignment of GI: 254781017 and SCOP domain: d1ueka1

Alignment
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=99.43  E-value=7.7e-12  Score=91.23  Aligned_cols=141  Identities=13%  Similarity=0.107  Sum_probs=96.6

Q ss_pred             EEECCEEEEEEC----CCEE-ECCCEEEEEEECCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
Q ss_conf             997170499974----3533-08942898776772899999868984999953644446566120150899999999971
Q gi|254781017|r    9 CVSAPGSLVLMG----EHGV-LHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHI   83 (324)
Q Consensus         9 ~~~aPGKv~L~G----Eh~v-~~G~~ai~~aI~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~   83 (324)
                      +..||+||||+=    -..+ ||.-..+.+.||.+..++++++++. +.+..         ..+..+-.++.+....+++
T Consensus         2 ~~~aPAKINL~L~V~~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~-~~~~~---------p~~~~Nlv~ka~~~l~~~~   71 (148)
T d1ueka1           2 ERLAPAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSG-LHFQG---------PYGRENLAYRAASLYLEAA   71 (148)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEESSC-EEEES---------TTGGGSHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEECCCCC-CCCCC---------CCCCCCHHHHHHHHHHHHC
T ss_conf             5431303804576376278985503279999897651289714664-11256---------5443213333455667751


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEE
Q ss_conf             87787389998268753548874024566556777640456666014557888877652146887544776629858998
Q gi|254781017|r   84 KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ  163 (324)
Q Consensus        84 ~~~~g~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~~i~~lA~~~E~~~~g~~sG~D~~a~~~Gg~i~~~  163 (324)
                      ....+++|+++.+||+++|||++||.+++++++++++. ..+.   ++.++|..+         |.|+..+.+|+..+.+
T Consensus        72 ~~~~~~~I~i~K~IP~~aGLGGGSsnAAa~l~~l~~~~-~~~~---~l~~la~~i---------GsDVPffl~~~~~~~~  138 (148)
T d1ueka1          72 GQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALY-PAEV---DLFALARTL---------GADVPFFLLGRGAEAR  138 (148)
T ss_dssp             TCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHS-CSCC---CHHHHHHHH---------CTTHHHHHHCSEEEEE
T ss_pred             CCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHH-HHHH---HHHHHHCCC---------CCCCHHHCCCCCEEEE
T ss_conf             88751899998237886311678304546999998861-3556---788862456---------9971242359878999


Q ss_pred             ECCCEEEEE
Q ss_conf             527515673
Q gi|254781017|r  164 MPKYSIEKI  172 (324)
Q Consensus       164 ~~~~~~~~~  172 (324)
                      .....+.++
T Consensus       139 G~Ge~l~pl  147 (148)
T d1ueka1         139 GVGERLKPL  147 (148)
T ss_dssp             TTTTEEEEE
T ss_pred             EECCEEEEC
T ss_conf             828286778


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]