HHSEARCH alignment of GI: 254781017 and SCOP domain: d1ueka2

Alignment
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=97.51  E-value=7.5e-05  Score=47.01  Aligned_cols=108  Identities=18%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             77752676584179899998889988608234899999998403320788987304864456899999899998616787
Q gi|254781017|r  175 IFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSD  254 (324)
Q Consensus       175 ~~~l~l~~tg~~~~T~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~lm~~~~~~L~~lgvs~  254 (324)
                      +.+++|++.+...+|+++-+.+...........              +...+++..+++..+...+.  .... ++   .
T Consensus         3 pl~~vlv~P~~~vST~~~y~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~Ndle--~~~~-~~---~   62 (120)
T d1ueka2           3 PVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLPV--------------EAILEALARGEEPPYWNSLE--GPAF-RL---F   62 (120)
T ss_dssp             CEEEEEEECCCCCCHHHHHHTCCGGGCCCCCCH--------------HHHHHHHHHTCCCSCCBTTH--HHHH-HH---C
T ss_pred             CCEEEEECCCCCCCHHHHHHHHCHHCCCCCCCH--------------HHHHHHHHHHCHHHHHCCHH--HHHH-HH---H
T ss_conf             975999899998657999987453204556787--------------99999898406998748649--9999-99---8


Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf             799999999997199459972689975489998466532689999999999779
Q gi|254781017|r  255 SKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKG  308 (324)
Q Consensus       255 ~~l~~li~~~~~~~g~~~aklsGAG~GG~~i~l~~~~~~~~~~~~~~~~~~~~g  308 (324)
                      |+++++.+.+.+ .|+.++.|||+|+  |++++++.+.++   +++.+.+.+.+
T Consensus        63 p~l~~~~~~l~~-~g~~~~~mSGSGs--t~F~l~~~~~~a---~~~~~~l~~~~  110 (120)
T d1ueka2          63 PELKEVRGRMRA-LGLRGVLMSGSGS--AFFGLAEGPDHA---RRAAEALRAWG  110 (120)
T ss_dssp             THHHHHHHHHHH-TTCEEEEECTTSS--CEEEECSSHHHH---HHHHHHHTTTS
T ss_pred             HHHHHHHHHHHH-HHHHHEEECCCCC--EEEEEECCHHHH---HHHHHHHHHHC
T ss_conf             669999999997-2304256648887--489986999999---99999988768


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]