RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] (324 letters) >gnl|CDD|31765 COG1577, ERG12, Mevalonate kinase [Lipid metabolism]. Length = 307 Score = 166 bits (422), Expect = 7e-42 Identities = 92/288 (31%), Positives = 154/288 (53%), Gaps = 12/288 (4%) Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLA 67 I VSAPG L+L GEH V++G+ A+ AI+ RV + ++ I I+SS + +L+ Sbjct: 1 ISVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLK-SSTLERD 59 Query: 68 MFHPSFSFII---MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHK 124 + + + F L++ S++ GLGSSAA++VA+ AL + Sbjct: 60 EDEGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAY-FGV 118 Query: 125 EPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLI--Y 182 E SP+E+ A+ + L VQG +SGID+A +GGL+ ++ EK++ L+ Sbjct: 119 ELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGF-DFEKLEIELLGTLVIGD 177 Query: 183 SGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR 242 +G T +++ ++ + E PE+ + I +G+L Q + AL+ + + L + MN Sbjct: 178 TGVPGSTKELVAGVAKLLEEEPEVID---PILDAIGELVQEAEAALQTGDFEELGELMNI 234 Query: 243 QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKG 290 QGLL+ LGVS +L E+V R + +K++G+G G C+IAL K Sbjct: 235 NQGLLKALGVSTPELDELVEAAR-SLGALGAKLTGAGGGGCIIALAKN 281 >gnl|CDD|36724 KOG1511, KOG1511, KOG1511, Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]. Length = 397 Score = 93.5 bits (232), Expect = 7e-20 Identities = 84/343 (24%), Positives = 141/343 (41%), Gaps = 71/343 (20%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINID--------------- 54 VSAPG ++L GEH V++G AL AI+ R L L + I + Sbjct: 7 VSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDISIEKAWSLADF 66 Query: 55 --------------------------SSLGQYCGSLDLAMFH-PSFSFIIMAINHIKPSC 87 LG + + H SF+ + + + Sbjct: 67 NGALPEQRSTYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAP 126 Query: 88 GFDLKVISQLDSQL----GLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLK-- 141 G + +DS+L GLGSSAAI+VA+ ALL L P + + + L Sbjct: 127 GTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINK 186 Query: 142 --------VQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLIYSGYKTP--TAQ 191 + G SGID A +GGLI ++ IE + + P+ ++ + + P T Sbjct: 187 WAFEGEKCIHGTPSGIDNAVCTYGGLISFK-KGVEIESLKHLPPLRILLTNTRVPRNTKA 245 Query: 192 VLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKV-------LAQAMNRQQ 244 ++ + + ++PE+ + I+ + ++S + L+ +N + L + + Q Sbjct: 246 LVAGVRELLEKFPEVIK---AIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRINQ 302 Query: 245 GLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIAL 287 LL+ LGVS L + R+ + SK++G+G G CVI L Sbjct: 303 DLLDALGVSHPSLELVCTTTRK--LGIHSKLTGAGGGGCVITL 343 >gnl|CDD|30502 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]. Length = 390 Score = 69.1 bits (169), Expect = 2e-12 Identities = 68/326 (20%), Positives = 115/326 (35%), Gaps = 49/326 (15%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD---RLINIDSSLGQYCGSLDL 66 APG + L+GEH +G L AIN + + R D RL + + L L Sbjct: 26 AFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLL 85 Query: 67 -AMFHPSFSF-------IIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALL 118 + I G D+ + + GL SSAA+ VA+ AL Sbjct: 86 DIAKEKIDDWANYVKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQ 145 Query: 119 TLQYHKEPSPDEILTTAHAIVLKVQGISSGI-DLAASIHGG-----LICY--------QM 164 L ++ E+ A + G++ GI D AS G L+ Sbjct: 146 RL-FNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPF 204 Query: 165 P--KYSIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKL-- 220 P SI ++ L S Y A+ + ++ + + ++ + +A + Sbjct: 205 PVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIE 264 Query: 221 ------------------SQISCQALRNKNLKVLAQAMNRQQGLL-ETLGVSDSKLSEIV 261 + +ALR+ +L + MN L + V+ +L +V Sbjct: 265 VDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLV 324 Query: 262 WKLREQPHIMASKISGSGLGDCVIAL 287 ++++G+G G CVIAL Sbjct: 325 EIALAAGGAYGARMTGAGFGGCVIAL 350 >gnl|CDD|33679 COG3890, ERG8, Phosphomevalonate kinase [Lipid metabolism]. Length = 337 Score = 63.1 bits (153), Expect = 1e-10 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 42/316 (13%) Query: 7 KICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDR---LINIDSSLGQYCG 62 I SAPG L+L G++ +L G +A AINKR K + L +I G Sbjct: 3 LISFSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCSFVRVKSKDSWLFHISIK-----G 57 Query: 63 SLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQL----DSQL--------GLGSSAAIT 110 + F+ ++ +C +L+V + S GLGSSAA+ Sbjct: 58 IDKNSFIELRSDFVFKYFAYLSQNCFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVA 117 Query: 111 VAITAALLTLQYHKEPSPD---EILTTAHAIVLKVQG-ISSGIDLAASIHGGLICYQMPK 166 ++T L L + + D EI A QG I SG D+AA+I G +I + Sbjct: 118 TSLTCGLF-LSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIYRRFEP 176 Query: 167 YSIEKIDFI-------FPIHLIYSGYKTPTAQVLKKI-SYIEIEYPEINEINQKIYALMG 218 I K+ I + + + + T ++ K+ + PE + N ++ + + Sbjct: 177 GLIPKLRQIGAVNFGDYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELKCNDEMNSRVL 236 Query: 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSD---SKLSEIVWKLREQPHIMASKI 275 L ++S +K K + +++ R + G++D K + + + + ++ I Sbjct: 237 NLIKLSLDESNSK-SKAIRRSLRR----ITEEGLADIEPIKQTAALDSIFDLLGVLCDLI 291 Query: 276 SGSGLGDCVIALGKGD 291 G+G GD + L + + Sbjct: 292 PGAGGGDAIFLLYRPN 307 >gnl|CDD|144028 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This family includes homoserine kinases, galactokinases and mevalonate kinases. Length = 67 Score = 49.9 bits (120), Expect = 1e-06 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 90 DLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGI 149 D+++ S + GLGSSAA+ VA+ AL L + S +E+ A G++SG Sbjct: 1 DIEIESNIPLGAGLGSSAALAVALLLALNEL-FGLPLSKEELARLALEA-EGAIGVNSGD 58 Query: 150 DLAASIHGG 158 D+AAS++GG Sbjct: 59 DVAASVYGG 67 >gnl|CDD|32091 COG1907, COG1907, Predicted archaeal sugar kinases [General function prediction only]. Length = 312 Score = 42.2 bits (99), Expect = 2e-04 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 26/130 (20%) Query: 50 LINIDSSLGQYCGSLDLAMFHPS------------------FSFIIMAINHIKPSC-GFD 90 LI+++ S+G+ G + LA+ P + A + G Sbjct: 14 LIDLNGSIGRVDGGVGLALEEPRLEIEAKPSDDIEVDGEDRRERVEKAARLVLEVGEGVK 73 Query: 91 LKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGID 150 +++ S + + +GLGS+ + +A+ +A+L + Y E S E+ A + +G +SGI Sbjct: 74 IEIRSDIPAHVGLGSTTQLALAVASAILEI-YGLELSIREL-----AFAVG-RGGTSGIG 126 Query: 151 LAASIHGGLI 160 + A +GG I Sbjct: 127 VYAFEYGGFI 136 >gnl|CDD|32597 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]. Length = 333 Score = 39.5 bits (92), Expect = 0.001 Identities = 51/282 (18%), Positives = 101/282 (35%), Gaps = 42/282 (14%) Query: 26 HGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIKP 85 HG A L I+K + + + D I + ++ S P + Sbjct: 26 HGGAVLNATIDKYIYVTIEKGFDDEIRVRYDRTEFVKSYLENEHKPLVVESLKRD----- 80 Query: 86 SCGFD----LKVISQLD--SQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIV 139 F+ +++ +Q D GLGSS+A VA+ AL + P E+ A+ I Sbjct: 81 FLEFNGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGES-LGPYELAREAYEIE 139 Query: 140 LKVQGISSGI-DLAASIHGG-----------LICYQMPKYSIEKIDFIFPIHLIYSGYKT 187 + I G D A+ GG ++ + + + L Y+G Sbjct: 140 REDLKIVGGKQDQYAAAFGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITR 199 Query: 188 PTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNK------NLKVLAQAMN 241 +++V++ ++ + + L ++ A K ++ Q ++ Sbjct: 200 QSSEVIED---------QVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIPEFGQILD 250 Query: 242 RQQGLLETL--GVSDSKLSEIVWKLREQPHIMASKISGSGLG 281 R + L +S+ + I ++L + K+SG+G G Sbjct: 251 RGWEAKKKLSSRISNDAIDRI-YELALKNGAYGGKLSGAGGG 291 >gnl|CDD|30432 COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism]. Length = 299 Score = 39.4 bits (92), Expect = 0.001 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 47/208 (22%) Query: 88 GFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISS 147 G +++ + GLGSSAA VA AA + P E L L++ Sbjct: 77 GVKIRIEKGIPLGRGLGSSAASIVAALAAA--NELAGLPLSKEEL-------LQLALEIE 127 Query: 148 G--IDLAASIHGGL-ICYQMPKYSIEKIDFIFPIHLI--YSGYKTPTAQ---VL-KKISY 198 G ++A ++ GGL + + K+ F + L+ ++ TA+ VL K S Sbjct: 128 GHPDNVAPAVLGGLVLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTAEARKVLPKSYSR 187 Query: 199 IEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMN-------RQQGLLETLG 251 + + N AL+ AL + ++L M R + + Sbjct: 188 KDAVF------NLSRAALL-------VAALLEGDPELLRAMMKDVIHEPYRAKLV----- 229 Query: 252 VSDSKLSEIVWKLREQPHIMASKISGSG 279 +E+ + + + + +SG+G Sbjct: 230 ---PGYAEVR-EAALEAGALGATLSGAG 253 >gnl|CDD|35850 KOG0631, KOG0631, KOG0631, Galactokinase [Carbohydrate transport and metabolism]. Length = 489 Score = 38.4 bits (89), Expect = 0.002 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 32/176 (18%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD-----RLINIDSSLGQYCGSL 64 APG + L+GEH G++ L AI+ ++ + D RL N + + L Sbjct: 42 ARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPL 101 Query: 65 DLAMF-----HPSFSFIIM-----AINHIK-------PSCGFDLKVISQLDSQLGLGSSA 107 ++ + +IK P G + + + GL SSA Sbjct: 102 PSIVWQIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSA 161 Query: 108 AITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQ-----GI-SSGIDLAASIHG 157 A A A L L P+ I++ + V G+ S G+D AAS+ Sbjct: 162 AWLCAAALATLKLNL----GPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLA 213 Score = 27.3 bits (60), Expect = 6.5 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 15/81 (18%) Query: 227 ALRN-KNLKVLAQAMNRQQGLLETLGV--SDSKLSEIV------------WKLREQPHIM 271 ALR + K+ A+A R G L G ++S S V K+ + Sbjct: 366 ALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGV 425 Query: 272 ASKISGSGLGDCVIALGKGDL 292 ++++G+G G C +AL DL Sbjct: 426 GARLTGAGWGGCTVALVPADL 446 >gnl|CDD|31871 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]. Length = 278 Score = 34.9 bits (80), Expect = 0.029 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%) Query: 78 MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHA 137 G +++V S++ GL SS+A + A+ A+L +E EIL A Sbjct: 60 RVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVL-KALGEEIDDFEILRLG-A 117 Query: 138 IVLKVQGIS-SGI--DLAASIHGGLICYQMPKYSIEKIDFIFPIH--LIYSGYKTPTAQV 192 K G+S +G D AS GG++ K I + + + ++ G K +A V Sbjct: 118 RASKEAGVSVTGAFDDACASYLGGIVITDNRKMRILRRLDLPELTVLILAPGEKRLSANV 177 >gnl|CDD|33213 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism]. Length = 329 Score = 31.4 bits (71), Expect = 0.31 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%) Query: 89 FDLKVISQ--LDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGIS 146 F +K++S + GL SSAA A+ AAL L + ++ + Sbjct: 89 FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEF---------LSRIARLG 139 Query: 147 SGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHL 180 SG + SI GG + ++ + + +F + L Sbjct: 140 SG-SASRSIFGGFVLWEKGEGEDSAAEQLFRLDL 172 >gnl|CDD|39843 KOG4644, KOG4644, KOG4644, L-fucose kinase [Carbohydrate transport and metabolism]. Length = 948 Score = 30.2 bits (67), Expect = 0.72 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 35/220 (15%) Query: 87 CGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQ-------------YHKEPSPDEILT 133 CGF++ S L GLG+S+ + AA+ H ++ILT Sbjct: 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILT 749 Query: 134 TAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFP----------IHLIYS 183 T + I GI ++ + IE + P + L+Y+ Sbjct: 750 TGGGWQDQCGAIMEGIKKGRCR------AELN-HGIEHEEITIPEEFREKLEDHLLLVYT 802 Query: 184 GYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR- 242 G KT A+ L + I + QK + L + + + +L++L + + Sbjct: 803 G-KTRLAKNLLQ-DVIRNFFARCKATKQKAHKLAEATDECA-EGFEKGSLELLGECLEHY 859 Query: 243 -QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLG 281 +Q G + E++ L H + +G+G G Sbjct: 860 WEQKKFMAPGCEPLNVRELLDMLAPHKHGESGWAAGAGGG 899 >gnl|CDD|39719 KOG4519, KOG4519, KOG4519, Phosphomevalonate kinase [Lipid transport and metabolism]. Length = 459 Score = 30.1 bits (67), Expect = 0.91 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 19/85 (22%) Query: 102 GLGSSAAITVAITAALL-TLQYHKEPSPDE--------------ILTTAHAIVLKVQG-I 145 GLGSSAA+T A+ AALL +L P + + TAH QG + Sbjct: 154 GLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHC---LAQGKV 210 Query: 146 SSGIDLAASIHGGLICYQMPKYSIE 170 SG D++A+++G + I Sbjct: 211 GSGFDVSAAVYGSQRYRRFSPELIS 235 >gnl|CDD|145793 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain. Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213). Length = 80 Score = 28.1 bits (64), Expect = 3.7 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAI 35 V APG+ GE G+L GHA L+ A+ Sbjct: 20 VVAPGT---EGEFGILPGHAPLLTAL 42 >gnl|CDD|35516 KOG0295, KOG0295, KOG0295, WD40 repeat-containing protein [Function unknown]. Length = 406 Score = 27.3 bits (60), Expect = 5.4 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 52 NIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITV 111 N+ L + S+ +FHPS + ++ A FD +L+ L + + + Sbjct: 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKV-FDT-ETGELERSLRGHTDSVFDI 156 Query: 112 AITAA 116 + A+ Sbjct: 157 SFDAS 161 >gnl|CDD|33677 COG3888, COG3888, Predicted transcriptional regulator [Transcription]. Length = 321 Score = 26.5 bits (58), Expect = 9.2 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%) Query: 228 LRNKNLKVLAQAMNRQQGLLET-----LGVSDSKLSEIVWKLREQPHIMASKISG 277 LR K ++ L +A +G+ +T +G+S S +SE + +L +Q + K+SG Sbjct: 5 LREKLIRELKRA--GPEGIDQTEIEELMGLSKSTVSEALSELEKQGIVKRRKVSG 57 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.137 0.400 Gapped Lambda K H 0.267 0.0820 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,768,086 Number of extensions: 195315 Number of successful extensions: 522 Number of sequences better than 10.0: 1 Number of HSP's gapped: 505 Number of HSP's successfully gapped: 24 Length of query: 324 Length of database: 6,263,737 Length adjustment: 94 Effective length of query: 230 Effective length of database: 4,232,491 Effective search space: 973472930 Effective search space used: 973472930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.6 bits)