RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (324 letters)



>gnl|CDD|31765 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
          Length = 307

 Score =  166 bits (422), Expect = 7e-42
 Identities = 92/288 (31%), Positives = 154/288 (53%), Gaps = 12/288 (4%)

Query: 8   ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLA 67
           I VSAPG L+L GEH V++G+ A+  AI+ RV + ++      I I+SS  +   +L+  
Sbjct: 1   ISVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLK-SSTLERD 59

Query: 68  MFHPSFSFII---MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHK 124
                    +     + +      F L++ S++    GLGSSAA++VA+  AL    +  
Sbjct: 60  EDEGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAY-FGV 118

Query: 125 EPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLI--Y 182
           E SP+E+   A+ + L VQG +SGID+A   +GGL+ ++      EK++      L+   
Sbjct: 119 ELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGF-DFEKLEIELLGTLVIGD 177

Query: 183 SGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR 242
           +G    T +++  ++ +  E PE+ +    I   +G+L Q +  AL+  + + L + MN 
Sbjct: 178 TGVPGSTKELVAGVAKLLEEEPEVID---PILDAIGELVQEAEAALQTGDFEELGELMNI 234

Query: 243 QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKG 290
            QGLL+ LGVS  +L E+V   R     + +K++G+G G C+IAL K 
Sbjct: 235 NQGLLKALGVSTPELDELVEAAR-SLGALGAKLTGAGGGGCIIALAKN 281


>gnl|CDD|36724 KOG1511, KOG1511, KOG1511, Mevalonate kinase MVK/ERG12 [Lipid
           transport and metabolism].
          Length = 397

 Score = 93.5 bits (232), Expect = 7e-20
 Identities = 84/343 (24%), Positives = 141/343 (41%), Gaps = 71/343 (20%)

Query: 10  VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINID--------------- 54
           VSAPG ++L GEH V++G  AL  AI+ R  L L    +  I +                
Sbjct: 7   VSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDISIEKAWSLADF 66

Query: 55  --------------------------SSLGQYCGSLDLAMFH-PSFSFIIMAINHIKPSC 87
                                       LG    + +    H    SF+ + +     + 
Sbjct: 67  NGALPEQRSTYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAP 126

Query: 88  GFDLKVISQLDSQL----GLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLK-- 141
           G    +   +DS+L    GLGSSAAI+VA+  ALL L     P    +    + + L   
Sbjct: 127 GTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINK 186

Query: 142 --------VQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLIYSGYKTP--TAQ 191
                   + G  SGID A   +GGLI ++     IE +  + P+ ++ +  + P  T  
Sbjct: 187 WAFEGEKCIHGTPSGIDNAVCTYGGLISFK-KGVEIESLKHLPPLRILLTNTRVPRNTKA 245

Query: 192 VLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKV-------LAQAMNRQQ 244
           ++  +  +  ++PE+ +    I+  + ++S  +   L+ +N +        L + +   Q
Sbjct: 246 LVAGVRELLEKFPEVIK---AIFDAIDEISLEAVWILQRENDEFSSPKEQKLEELIRINQ 302

Query: 245 GLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIAL 287
            LL+ LGVS   L  +    R+    + SK++G+G G CVI L
Sbjct: 303 DLLDALGVSHPSLELVCTTTRK--LGIHSKLTGAGGGGCVITL 343


>gnl|CDD|30502 COG0153, GalK, Galactokinase [Carbohydrate transport and
           metabolism].
          Length = 390

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 68/326 (20%), Positives = 115/326 (35%), Gaps = 49/326 (15%)

Query: 10  VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD---RLINIDSSLGQYCGSLDL 66
             APG + L+GEH   +G   L  AIN    + +  R D   RL + +         L L
Sbjct: 26  AFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLL 85

Query: 67  -AMFHPSFSF-------IIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALL 118
                    +       I           G D+ +   +    GL SSAA+ VA+  AL 
Sbjct: 86  DIAKEKIDDWANYVKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQ 145

Query: 119 TLQYHKEPSPDEILTTAHAIVLKVQGISSGI-DLAASIHGG-----LICY--------QM 164
            L ++      E+   A     +  G++ GI D  AS  G      L+            
Sbjct: 146 RL-FNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPF 204

Query: 165 P--KYSIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKL-- 220
           P    SI  ++      L  S Y    A+  +   ++ +    + ++  + +A +     
Sbjct: 205 PVGGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIE 264

Query: 221 ------------------SQISCQALRNKNLKVLAQAMNRQQGLL-ETLGVSDSKLSEIV 261
                                + +ALR+ +L    + MN     L +   V+  +L  +V
Sbjct: 265 VDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLV 324

Query: 262 WKLREQPHIMASKISGSGLGDCVIAL 287
                      ++++G+G G CVIAL
Sbjct: 325 EIALAAGGAYGARMTGAGFGGCVIAL 350


>gnl|CDD|33679 COG3890, ERG8, Phosphomevalonate kinase [Lipid metabolism].
          Length = 337

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 72/316 (22%), Positives = 130/316 (41%), Gaps = 42/316 (13%)

Query: 7   KICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDR---LINIDSSLGQYCG 62
            I  SAPG L+L G++ +L  G +A   AINKR        K +   L +I        G
Sbjct: 3   LISFSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCSFVRVKSKDSWLFHISIK-----G 57

Query: 63  SLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQL----DSQL--------GLGSSAAIT 110
               +       F+     ++  +C  +L+V +       S          GLGSSAA+ 
Sbjct: 58  IDKNSFIELRSDFVFKYFAYLSQNCFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVA 117

Query: 111 VAITAALLTLQYHKEPSPD---EILTTAHAIVLKVQG-ISSGIDLAASIHGGLICYQMPK 166
            ++T  L  L +    + D   EI   A       QG I SG D+AA+I G +I  +   
Sbjct: 118 TSLTCGLF-LSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGSIIYRRFEP 176

Query: 167 YSIEKIDFI-------FPIHLIYSGYKTPTAQVLKKI-SYIEIEYPEINEINQKIYALMG 218
             I K+  I       + + +      + T  ++ K+  +     PE  + N ++ + + 
Sbjct: 177 GLIPKLRQIGAVNFGDYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELKCNDEMNSRVL 236

Query: 219 KLSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSD---SKLSEIVWKLREQPHIMASKI 275
            L ++S     +K  K + +++ R    +   G++D    K +  +  + +   ++   I
Sbjct: 237 NLIKLSLDESNSK-SKAIRRSLRR----ITEEGLADIEPIKQTAALDSIFDLLGVLCDLI 291

Query: 276 SGSGLGDCVIALGKGD 291
            G+G GD +  L + +
Sbjct: 292 PGAGGGDAIFLLYRPN 307


>gnl|CDD|144028 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain.  This
           family includes homoserine kinases, galactokinases and
           mevalonate kinases.
          Length = 67

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 90  DLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGI 149
           D+++ S +    GLGSSAA+ VA+  AL  L +    S +E+   A        G++SG 
Sbjct: 1   DIEIESNIPLGAGLGSSAALAVALLLALNEL-FGLPLSKEELARLALEA-EGAIGVNSGD 58

Query: 150 DLAASIHGG 158
           D+AAS++GG
Sbjct: 59  DVAASVYGG 67


>gnl|CDD|32091 COG1907, COG1907, Predicted archaeal sugar kinases [General
           function prediction only].
          Length = 312

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 26/130 (20%)

Query: 50  LINIDSSLGQYCGSLDLAMFHPS------------------FSFIIMAINHIKPSC-GFD 90
           LI+++ S+G+  G + LA+  P                      +  A   +     G  
Sbjct: 14  LIDLNGSIGRVDGGVGLALEEPRLEIEAKPSDDIEVDGEDRRERVEKAARLVLEVGEGVK 73

Query: 91  LKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGID 150
           +++ S + + +GLGS+  + +A+ +A+L + Y  E S  E+     A  +  +G +SGI 
Sbjct: 74  IEIRSDIPAHVGLGSTTQLALAVASAILEI-YGLELSIREL-----AFAVG-RGGTSGIG 126

Query: 151 LAASIHGGLI 160
           + A  +GG I
Sbjct: 127 VYAFEYGGFI 136


>gnl|CDD|32597 COG2605, COG2605, Predicted kinase related to galactokinase and
           mevalonate kinase [General function prediction only].
          Length = 333

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 51/282 (18%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 26  HGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIKP 85
           HG A L   I+K + + +    D  I +     ++  S       P     +        
Sbjct: 26  HGGAVLNATIDKYIYVTIEKGFDDEIRVRYDRTEFVKSYLENEHKPLVVESLKRD----- 80

Query: 86  SCGFD----LKVISQLD--SQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIV 139
              F+    +++ +Q D     GLGSS+A  VA+  AL   +      P E+   A+ I 
Sbjct: 81  FLEFNGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGES-LGPYELAREAYEIE 139

Query: 140 LKVQGISSGI-DLAASIHGG-----------LICYQMPKYSIEKIDFIFPIHLIYSGYKT 187
            +   I  G  D  A+  GG           ++   +        +    + L Y+G   
Sbjct: 140 REDLKIVGGKQDQYAAAFGGFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITR 199

Query: 188 PTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNK------NLKVLAQAMN 241
            +++V++          ++  +       +  L ++   A   K      ++    Q ++
Sbjct: 200 QSSEVIED---------QVRNVVDGDEETLEALHEMKALAYEMKDALVRNDIPEFGQILD 250

Query: 242 RQQGLLETL--GVSDSKLSEIVWKLREQPHIMASKISGSGLG 281
           R     + L   +S+  +  I ++L  +      K+SG+G G
Sbjct: 251 RGWEAKKKLSSRISNDAIDRI-YELALKNGAYGGKLSGAGGG 291


>gnl|CDD|30432 COG0083, ThrB, Homoserine kinase [Amino acid transport and
           metabolism].
          Length = 299

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 47/208 (22%)

Query: 88  GFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISS 147
           G  +++   +    GLGSSAA  VA  AA    +    P   E L       L++     
Sbjct: 77  GVKIRIEKGIPLGRGLGSSAASIVAALAAA--NELAGLPLSKEEL-------LQLALEIE 127

Query: 148 G--IDLAASIHGGL-ICYQMPKYSIEKIDFIFPIHLI--YSGYKTPTAQ---VL-KKISY 198
           G   ++A ++ GGL +  +       K+ F   + L+     ++  TA+   VL K  S 
Sbjct: 128 GHPDNVAPAVLGGLVLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTAEARKVLPKSYSR 187

Query: 199 IEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMN-------RQQGLLETLG 251
            +  +      N    AL+         AL   + ++L   M        R + +     
Sbjct: 188 KDAVF------NLSRAALL-------VAALLEGDPELLRAMMKDVIHEPYRAKLV----- 229

Query: 252 VSDSKLSEIVWKLREQPHIMASKISGSG 279
                 +E+  +   +   + + +SG+G
Sbjct: 230 ---PGYAEVR-EAALEAGALGATLSGAG 253


>gnl|CDD|35850 KOG0631, KOG0631, KOG0631, Galactokinase [Carbohydrate transport
           and metabolism].
          Length = 489

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 32/176 (18%)

Query: 10  VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD-----RLINIDSSLGQYCGSL 64
             APG + L+GEH    G++ L  AI+   ++ +    D     RL N +     +   L
Sbjct: 42  ARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPL 101

Query: 65  DLAMF-----HPSFSFIIM-----AINHIK-------PSCGFDLKVISQLDSQLGLGSSA 107
              ++        +             +IK       P  G  +     + +  GL SSA
Sbjct: 102 PSIVWQIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSA 161

Query: 108 AITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQ-----GI-SSGIDLAASIHG 157
           A   A   A L L       P+ I++      + V      G+ S G+D AAS+  
Sbjct: 162 AWLCAAALATLKLNL----GPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLA 213



 Score = 27.3 bits (60), Expect = 6.5
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 15/81 (18%)

Query: 227 ALRN-KNLKVLAQAMNRQQGLLETLGV--SDSKLSEIV------------WKLREQPHIM 271
           ALR  +  K+ A+A  R  G L   G   ++S  S  V             K+      +
Sbjct: 366 ALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGGV 425

Query: 272 ASKISGSGLGDCVIALGKGDL 292
            ++++G+G G C +AL   DL
Sbjct: 426 GARLTGAGWGGCTVALVPADL 446


>gnl|CDD|31871 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
           and metabolism / Coenzyme metabolism].
          Length = 278

 Score = 34.9 bits (80), Expect = 0.029
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 78  MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHA 137
                     G +++V S++    GL SS+A + A+  A+L     +E    EIL    A
Sbjct: 60  RVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVL-KALGEEIDDFEILRLG-A 117

Query: 138 IVLKVQGIS-SGI--DLAASIHGGLICYQMPKYSIEKIDFIFPIH--LIYSGYKTPTAQV 192
              K  G+S +G   D  AS  GG++     K  I +   +  +   ++  G K  +A V
Sbjct: 118 RASKEAGVSVTGAFDDACASYLGGIVITDNRKMRILRRLDLPELTVLILAPGEKRLSANV 177


>gnl|CDD|33213 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid
           metabolism].
          Length = 329

 Score = 31.4 bits (71), Expect = 0.31
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 89  FDLKVISQ--LDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGIS 146
           F +K++S     +  GL SSAA   A+ AAL  L                  + ++  + 
Sbjct: 89  FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEF---------LSRIARLG 139

Query: 147 SGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHL 180
           SG   + SI GG + ++  +      + +F + L
Sbjct: 140 SG-SASRSIFGGFVLWEKGEGEDSAAEQLFRLDL 172


>gnl|CDD|39843 KOG4644, KOG4644, KOG4644, L-fucose kinase [Carbohydrate transport
           and metabolism].
          Length = 948

 Score = 30.2 bits (67), Expect = 0.72
 Identities = 43/220 (19%), Positives = 78/220 (35%), Gaps = 35/220 (15%)

Query: 87  CGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQ-------------YHKEPSPDEILT 133
           CGF++   S L    GLG+S+ +     AA+                  H     ++ILT
Sbjct: 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILT 749

Query: 134 TAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFP----------IHLIYS 183
           T      +   I  GI             ++  + IE  +   P          + L+Y+
Sbjct: 750 TGGGWQDQCGAIMEGIKKGRCR------AELN-HGIEHEEITIPEEFREKLEDHLLLVYT 802

Query: 184 GYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR- 242
           G KT  A+ L +   I   +       QK + L     + + +     +L++L + +   
Sbjct: 803 G-KTRLAKNLLQ-DVIRNFFARCKATKQKAHKLAEATDECA-EGFEKGSLELLGECLEHY 859

Query: 243 -QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLG 281
            +Q      G     + E++  L    H  +   +G+G G
Sbjct: 860 WEQKKFMAPGCEPLNVRELLDMLAPHKHGESGWAAGAGGG 899


>gnl|CDD|39719 KOG4519, KOG4519, KOG4519, Phosphomevalonate kinase [Lipid
           transport and metabolism].
          Length = 459

 Score = 30.1 bits (67), Expect = 0.91
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 19/85 (22%)

Query: 102 GLGSSAAITVAITAALL-TLQYHKEPSPDE--------------ILTTAHAIVLKVQG-I 145
           GLGSSAA+T A+ AALL +L       P +              +  TAH      QG +
Sbjct: 154 GLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHC---LAQGKV 210

Query: 146 SSGIDLAASIHGGLICYQMPKYSIE 170
            SG D++A+++G     +     I 
Sbjct: 211 GSGFDVSAAVYGSQRYRRFSPELIS 235


>gnl|CDD|145793 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain,
          beta-sandwich domain.  Part of the ATP synthase CF(1).
          These subunits are part of the head unit of the ATP
          synthase. The subunit is called epsilon in bacteria and
          delta in mitochondria. In bacteria the delta (D)
          subunit is equivalent to the mitochondrial Oligomycin
          sensitive subunit, OSCP (pfam00213).
          Length = 80

 Score = 28.1 bits (64), Expect = 3.7
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAI 35
          V APG+    GE G+L GHA L+ A+
Sbjct: 20 VVAPGT---EGEFGILPGHAPLLTAL 42


>gnl|CDD|35516 KOG0295, KOG0295, KOG0295, WD40 repeat-containing protein [Function
           unknown].
          Length = 406

 Score = 27.3 bits (60), Expect = 5.4
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 52  NIDSSLGQYCGSLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITV 111
           N+   L  +  S+   +FHPS + ++ A         FD     +L+  L   + +   +
Sbjct: 99  NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKV-FDT-ETGELERSLRGHTDSVFDI 156

Query: 112 AITAA 116
           +  A+
Sbjct: 157 SFDAS 161


>gnl|CDD|33677 COG3888, COG3888, Predicted transcriptional regulator
           [Transcription].
          Length = 321

 Score = 26.5 bits (58), Expect = 9.2
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 228 LRNKNLKVLAQAMNRQQGLLET-----LGVSDSKLSEIVWKLREQPHIMASKISG 277
           LR K ++ L +A    +G+ +T     +G+S S +SE + +L +Q  +   K+SG
Sbjct: 5   LREKLIRELKRA--GPEGIDQTEIEELMGLSKSTVSEALSELEKQGIVKRRKVSG 57


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0820    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,768,086
Number of extensions: 195315
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 24
Length of query: 324
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,232,491
Effective search space: 973472930
Effective search space used: 973472930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)