RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] (324 letters) >1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Score = 135 bits (339), Expect = 1e-32 Identities = 83/369 (22%), Positives = 131/369 (35%), Gaps = 62/369 (16%) Query: 7 KICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDL 66 + VSAPG ++L GEH V+HG AL A+N R L L + + ++++ D+ Sbjct: 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDV 64 Query: 67 AMFHPSFSFIIMAINHIKPSC--------------------------------------- 87 A + + + P+ Sbjct: 65 ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQR 124 Query: 88 ---GFDLKVISQLDSQLGLGSSAAITVAITAALLTL--------------QYHKEPSPDE 130 D+ V S+L GLGSSAA +V + AALLT E Sbjct: 125 TLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKS 184 Query: 131 ILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLIYSGYKTPTA 190 I A+ + G SG+D + S GG + YQ K S K I L + T Sbjct: 185 INKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRSTK 244 Query: 191 QVLKKISYIEIEYP----EINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGL 246 ++ + I++P + I ++ A + VL + M+ Q Sbjct: 245 ALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHH 304 Query: 247 LETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHA 306 L LGV + L ++ H + SK++G+G G C I L K L ++ + Sbjct: 305 LNALGVGHASLDQLCQVTAA--HGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTG 362 Query: 307 KGIDIVPIT 315 G D + Sbjct: 363 CGFDCWETS 371 >2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Score = 133 bits (336), Expect = 5e-32 Identities = 61/281 (21%), Positives = 118/281 (41%), Gaps = 11/281 (3%) Query: 11 SAPGSLVLMGEHGVLHGHAALVFAINK-RVILYLTLRKDRLINIDSSLGQYCGSLDLAMF 69 + G ++L+GEH V G A+ N ++ + + + + S Y G L A Sbjct: 10 ESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDV-YDGMLYDAPD 68 Query: 70 HPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPD 129 H S + + + + + + L GLGSSAA+ VA A K + + Sbjct: 69 HLK-SLVNRFVELNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDF-LGKSLTKE 126 Query: 130 EILTTAHAIVLKVQGISSGIDLAASIHGGLICYQM-PKYSIEKIDFIFPIHLIYSGYKTP 188 E++ A+ G SGID + G + +Q +++ + + +I +G K Sbjct: 127 ELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQKGHAETLKTLSLDGYMVVIDTGVKGS 186 Query: 189 TAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLE 248 T Q + + + + ++ + +GKL + + + + LA N L+ Sbjct: 187 TRQAVHDVHKLCEDPQYMSHVKH-----IGKLVLRASDVIEHHKFEALADIFNECHADLK 241 Query: 249 TLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGK 289 L VS K+ +++ +E +A K++G+G G ++ L K Sbjct: 242 ALTVSHDKIEQLMKIGKEN-GAIAGKLTGAGRGGSMLLLAK 281 >3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Score = 131 bits (331), Expect = 2e-31 Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 52/357 (14%) Query: 6 HKICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSS--LGQYCG 62 +K+ V PG L + GE+ V+ GH A++ A+N+ + L L + + I + Sbjct: 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPI 64 Query: 63 SLDLAMFHPSFSFIIMAIN--------HIKPSCGFDLKVISQLDSQLGLGSSAAITVAIT 114 +L ++F AIN + + ++L Q G + A T Sbjct: 65 GGELKPDGEHWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAAT 124 Query: 115 AAL---LTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ-------- 163 A+ L +++ E S + A L VQG S D+A+ ++GG I Y Sbjct: 125 VAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVK 184 Query: 164 ---------------MPKYSIEKIDFIFPIHLI-YSGYKTPTAQVLKKISYIEIEYPEIN 207 P IE ++ P + ++G T +++ +I + E + Sbjct: 185 HRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNY 244 Query: 208 EINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLG------VSDSKLSEIV 261 + ++ + QA K+ ++L ++ + +L+ LG + S L E+ Sbjct: 245 QHFLTR---NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELA 301 Query: 262 WKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSH 318 A K SGSG GDC IA K + + + GI +P Sbjct: 302 DSAENMGG--AGKSSGSGGGDCGIAFSKTKELA---EKLVNEWEKLGIKHLPFHTGR 353 >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Score = 131 bits (329), Expect = 2e-31 Identities = 77/326 (23%), Positives = 143/326 (43%), Gaps = 41/326 (12%) Query: 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD 65 + + P ++L GEH V++G+ A+ AI+ + + ++ I ++ + L+ Sbjct: 4 SHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLN 63 Query: 66 LAMF-------HPSFSFIIMAINH------IKPSCGFDLKVISQLDSQLGLGSSAAITVA 112 L F + + AI + I+P GF + + S++ GLGSSA+IT+ Sbjct: 64 LNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIG 123 Query: 113 ITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKI 172 A+ Y+KE DEI + + ++QG +S D + + G++ + K+ K Sbjct: 124 TIKAVSGF-YNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKG 182 Query: 173 DFIF------PIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQ 226 +F + + K TA+++ +++ IE + EI+ ++ + Sbjct: 183 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEID-----------KVIDE 231 Query: 227 ALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIA 286 AL+ KN + + M + LL+ L +S KL IV +K++G+G G CVI Sbjct: 232 ALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNR--FGFGAKLTGAGGGGCVII 289 Query: 287 LGKGD--------LNSLPYQSVNCHM 304 L + LN + NC M Sbjct: 290 LVNEEKEKELLKELNKEDVRIFNCRM 315 >2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A* Length = 337 Score = 120 bits (301), Expect = 5e-28 Identities = 53/313 (16%), Positives = 98/313 (31%), Gaps = 35/313 (11%) Query: 7 KICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD 65 I V G L GE+ +L G AL+ I + + I S + + L Sbjct: 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYM--RAEIAFSDSYRIYSDMFDFAVDLR 60 Query: 66 LAMFHPSFSFIIMAINHI--------KPSCGFDLKVISQLDSQLGLGSSAAITVAITAAL 117 +P +S I I + + F L + +++ + + + + Sbjct: 61 ---PNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVV 117 Query: 118 LTLQ--YHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMP-----KYSIE 170 L Y+ + + A++LK S DLA L+ YQ +E Sbjct: 118 KALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLE 177 Query: 171 KIDFIFPIHLIYSGYKTPT----------AQVLKKISYIEIEYPEINEINQKIYALMGKL 220 + + + + + + + INQ + Sbjct: 178 EENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKET 237 Query: 221 SQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDS--KLSEIVWKLREQPHIMASKISGS 278 +AL + + + + LLE L L ++ ++ +K SG+ Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA--VAKSSGA 295 Query: 279 GLGDCVIALGKGD 291 G GDC IAL Sbjct: 296 GGGDCGIALSFDA 308 >2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Score = 109 bits (273), Expect = 7e-25 Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 12/283 (4%) Query: 12 APGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD-RLINIDSSLGQYCGSLDLAM-- 68 G ++L GEH V+HG A+V I++ L + + +D G + Sbjct: 18 GYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRPAIPGYIAQKRDE 77 Query: 69 FHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSP 128 + ++ + G + + L G+G+SA+ VA + AL L Sbjct: 78 QIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDE 137 Query: 129 DEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIH----LIYSG 184 + L+ G SG D A+ +GGLI Y+ F ++ +G Sbjct: 138 EVNLSAFVGE-GGYHGTPSGADNTAATYGGLILYRRQNGKSVFKPIAFQQRLYLVVVGTG 196 Query: 185 YKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQ 244 TA+V+ + ++ + P + ++Y + + +AL+ +L+ L Q MN Sbjct: 197 INASTAKVVNDVHKMKQQQPVQFK---RLYDNYTHIVSQAREALQKGDLQRLGQLMNANH 253 Query: 245 GLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIAL 287 L + VS +L IV R + +K+SG+G G +AL Sbjct: 254 DLCRQIDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVAL 295 >2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Score = 109 bits (272), Expect = 9e-25 Identities = 56/307 (18%), Positives = 123/307 (40%), Gaps = 25/307 (8%) Query: 11 SAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFH 70 A ++L+GEH V++G+ A+ + + + +++ +S Y + Sbjct: 9 QAHSKIILIGEHAVVYGYPAISLPLLEVEV------TCKVVPAESPWRLY----EEDTLS 58 Query: 71 PSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDE 130 + + +N + ++ S + + G+GSSAAI++A A+ Y + D Sbjct: 59 MAVYASLEYLNITEA--CIRCEIDSAIPEKRGMGSSAAISIAAIRAVFD-YYQADLPHDV 115 Query: 131 ILTTAHAIVLKVQGISSGIDLAASIHGGLI-CYQMPKYSIEKIDFIFPIHLIYSGYKTPT 189 + + + SG+D + I + ++ ++D + + +G T Sbjct: 116 LEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKNVGFTELEMDLSAYLVIADTGVYGHT 175 Query: 190 AQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLET 249 + ++ + +G+L+Q + A+ K+ + L Q +++ L+ Sbjct: 176 REAIQV-------VQNKGKDALPFLHALGELTQQAEIAISQKDAEGLGQILSQAHLHLKE 228 Query: 250 LGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGI 309 +GVS + +V + +K+SG GLG C+IAL ++ Q + + KG Sbjct: 229 IGVSSLEADSLVETALSH-GALGAKMSGGGLGGCIIALVTNLTHA---QELAERLEEKGA 284 Query: 310 DIVPITP 316 I Sbjct: 285 VQTWIES 291 >1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Score = 102 bits (255), Expect = 9e-23 Identities = 52/332 (15%), Positives = 106/332 (31%), Gaps = 49/332 (14%) Query: 9 CVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM 68 +PG + L+GEH +G +I LR+D+ + + S G ++ + Sbjct: 50 YFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDL 109 Query: 69 FHPSFSFIIMAINHIK------------PSCGFDLKVISQLDSQLGLGSSAAITVAITAA 116 + N++K GF+L + ++ + GL SSA++ + + Sbjct: 110 DEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVV 169 Query: 117 LLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG---LICYQMPKYSIEKID 173 L L P + + + S +D A G I E + Sbjct: 170 LDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVP 229 Query: 174 FIFP---IHLIYSGYKTPTAQVLKKISYIEIEY--------------------------- 203 I ++ + + + E Sbjct: 230 VELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTD 289 Query: 204 ---PEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR-QQGLLETLGVSDSKLSE 259 E + ++I+ +A NL + +N L + V+ +L Sbjct: 290 LIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDT 349 Query: 260 IVWKLREQPHIMASKISGSGLGDCVIALGKGD 291 + ++Q ++ ++++G+G G C IAL D Sbjct: 350 LAETAQKQAGVLGARMTGAGFGGCAIALVAHD 381 >1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Score = 102 bits (253), Expect = 2e-22 Identities = 60/331 (18%), Positives = 107/331 (32%), Gaps = 48/331 (14%) Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLA 67 + VSAPG + L+GEH + L A+ +L + RKD L+++ ++ L Sbjct: 37 LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQ 96 Query: 68 MFHPSFSFII--------------MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAI 113 P+ + + P GF V+S + GL SSA++ VA Sbjct: 97 FPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVAT 156 Query: 114 TAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIH----GGLICYQMPKYSI 169 L L + G+ GI G + Sbjct: 157 YTFLQQL-CPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET 215 Query: 170 EKIDFIFPIH---LIYSGYKTPT---------------AQVLKKISYIEIEYPEINEINQ 211 + P + S + A+ L K S E++ E+ Sbjct: 216 SLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARD 275 Query: 212 KIYALMGKLSQISCQ----------ALRNKNLKVLAQAMNR-QQGLLETLGVSDSKLSEI 260 + + ++ ALR + + + M + L + VS +L ++ Sbjct: 276 LVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQL 335 Query: 261 VWKLREQPHIMASKISGSGLGDCVIALGKGD 291 V P + S+++G G G C + L + Sbjct: 336 VEAALAVPGVYGSRMTGGGFGGCTVTLLEAS 366 >3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Score = 90.4 bits (223), Expect = 4e-19 Identities = 48/343 (13%), Positives = 99/343 (28%), Gaps = 33/343 (9%) Query: 8 ICVSAPGSLVLMGEH------GVLHGHAALVFAINKRVILYLTLRKDRLINIDSS---LG 58 + AP L L G ++G L IN + I I++ Sbjct: 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCC 63 Query: 59 QYCGSLDLAMFHPSFSFIIMAINHIK-----PSCGFDLKVISQLDSQLGLGSSAAITVAI 113 + S+ S I N I F + + + GLG+S+ + V I Sbjct: 64 KSYLSMSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCI 123 Query: 114 TAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKID 173 A + + + D A+ GG + + + ++ Sbjct: 124 LKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVN 183 Query: 174 FIFPIHLIYSGYKTPTAQVLKKISYI--EIEYPEINEINQKIYALMGKLSQISC------ 225 + I ++ S I + ++ + + +I Sbjct: 184 PLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTK 243 Query: 226 QALRNKNLKVLAQAMNRQQGLLETL--GVSDSKLSEIVWKLREQPHIMASKISGSGLGDC 283 AL ++ A+ + + + +++ + E MA K+SG+G G Sbjct: 244 LALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGF 302 Query: 284 VIALGKGD--------LNSLPYQSVNCHMHAKGIDIVPITPSH 318 ++ + + LN+L + G I + Sbjct: 303 IMFVVEPTRKEEVVRALNNLNGFVMPFQFIDDGAHGWKIYSTD 345 >2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Score = 88.5 bits (218), Expect = 2e-18 Identities = 56/317 (17%), Positives = 107/317 (33%), Gaps = 35/317 (11%) Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLA 67 I V +PG + L+GEH + AIN + + ++ + + SL+ Sbjct: 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHFGEERKFSLNDL 61 Query: 68 MFHPSFSFIIMAINHI-----KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQY 122 S+ + I + G +V L GL SSA+ V I L L Y Sbjct: 62 RKENSWIDYVKGIFWVLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKL-Y 120 Query: 123 HKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG------LICYQMPKYSIEKIDFIF 176 + + + A + G+ GI ++ G + Y Sbjct: 121 NLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDV 180 Query: 177 PIHLIYSGYKTPT---------------AQVLKKISYIEIEYPEINEINQKIYALMGKLS 221 I + Y+G + ++L K S E+ E++++ G + Sbjct: 181 SILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIV 240 Query: 222 QISCQALRNKNL-------KVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASK 274 + + + L ++ +V L + VS +L V + + ++ Sbjct: 241 RENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGAR 299 Query: 275 ISGSGLGDCVIALGKGD 291 ++G+G G IAL + Sbjct: 300 LTGAGFGGSAIALVDKE 316 >2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} Length = 548 Score = 65.3 bits (158), Expect = 2e-11 Identities = 55/325 (16%), Positives = 98/325 (30%), Gaps = 47/325 (14%) Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDR-----LINIDSSLGQYCG 62 +PG + L+GEH + L AI+ ++ + + ++ LIN D Q Sbjct: 66 FVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKF 125 Query: 63 SLD----------------------LAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQ 100 L L + H + P G + + + Sbjct: 126 DLPLDGSYVTIDPSVSDWSNYFKCGLHVAHSFLKKLAPERFASAPLAGLQVFCEGDVPTG 185 Query: 101 LGLGSSAAITVAITAALLT--LQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG 158 GL SSAA A+ A++ + S ++ V + G+D AAS+ G Sbjct: 186 SGLSSSAAFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVNNGGMDQAASVCGE 245 Query: 159 ----LICYQMPKYSIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIY 214 L P+ F + S T V K Y Sbjct: 246 EDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRVVEVTTAA 305 Query: 215 ALMGK-----------LSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWK 263 ++ S + LR+ A+ N + +L++++ Sbjct: 306 NVLAATYGVVLLSGKEGSSTNKGNLRDFMNVYYARYHNISTPWNGDIESGIERLTKMLVL 365 Query: 264 LREQPHIMASKISGSGLGDCVIALG 288 + E +A+K G + D +L Sbjct: 366 VEES---LANKKQGFSVDDVAQSLN 387 Score = 38.8 bits (89), Expect = 0.002 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 224 SCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISGSGLGD 282 + K MN Q + L S ++ +I S+++G+G G Sbjct: 434 ASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALS-NGSYGSRLTGAGWGG 492 Query: 283 CVIAL 287 C + L Sbjct: 493 CTVHL 497 >2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Score = 58.8 bits (141), Expect = 2e-09 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 19/201 (9%) Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD---RLINIDSSLGQYCGSL 64 V APG + ++GEH G++ L A+ + V++ + K +L N + + S Sbjct: 56 FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSA 115 Query: 65 DLAMF----HPSFSFIIMAINHI------KPSCGFDLKVISQLDSQLGLGSSAAITVAIT 114 + ++ + + I G + V + GL SS+A+ Sbjct: 116 NNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAG 175 Query: 115 AALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG-----LICYQMPKYSI 169 LT+ E+ + G+D + S LI + + + Sbjct: 176 LVTLTVLGRNLS-KVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATD 234 Query: 170 EKIDFIFPIHLIYSGYKTPTA 190 K+ + S + A Sbjct: 235 VKLPSGAVFVIANSCVEMNKA 255 Score = 45.3 bits (106), Expect = 2e-05 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 225 CQALRNKNLKVLAQAMNR-QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDC 283 C+ +++L + MN+ + S +L ++V R+ S+++G+G G C Sbjct: 369 CEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGC 427 Query: 284 VIALGKGD 291 +++ D Sbjct: 428 TVSMVPAD 435 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 48.4 bits (115), Expect = 2e-06 Identities = 74/443 (16%), Positives = 122/443 (27%), Gaps = 202/443 (45%) Query: 1 MGQCLHKICVSAPGS------LVLMG-EHGVLHG---HAALV---------FAINKRVIL 41 +G + S G L L E+ L G HA K +I Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124 Query: 42 -YLTLR---KDRLINIDSSL-----------------GQYCGSLD-----LAMFH---PS 72 Y+T R K +S GQ G+ D L + Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFEELRDLYQTYHV 182 Query: 73 F--SFIIMAINHIK-----PSC-------GFD-LKVISQLDSQLGLG--SSAAITV---- 111 I + + G + L+ + + S I+ Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242 Query: 112 -------AITAALLTLQYHKEPSPDEIL-----TTAHAIVLKVQGISSGIDLAAS----- 154 +TA LL +P E+ T H+ QG+ + + +A + Sbjct: 243 VIQLAHYVVTAKLLGF------TPGELRSYLKGATGHS-----QGLVTAVAIAETDSWES 291 Query: 155 --------------IHGGLICYQ-MPKYSIEKIDFIFPIHL---IYSGYKTPT------- 189 I G+ CY+ P S+ P L + + P+ Sbjct: 292 FFVSVRKAITVLFFI--GVRCYEAYPNTSLP------PSILEDSLENNEGVPSPMLSISN 343 Query: 190 ---AQVLKKI----SYIEIEYPEINEINQKIYALMGKLSQISCQALRN--KNLKVLAQAM 240 QV + S++ P +++ IS L N KNL V++ Sbjct: 344 LTQEQVQDYVNKTNSHL----PA----GKQVE--------IS---LVNGAKNL-VVS--- 380 Query: 241 NRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQS 299 G ++L G + LR+ A SGL D + +P+ Sbjct: 381 ----GPPQSLYG--------LNLTLRK---AKAP----SGL----------DQSRIPFSE 411 Query: 300 --VNCHMHAKGIDIVPIT-PSHS 319 + +P+ P HS Sbjct: 412 RKLKFSNR-----FLPVASPFHS 429 Score = 27.6 bits (61), Expect = 4.3 Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 100/290 (34%) Query: 79 AINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAAL-LTLQYHKEPSPDEILTTAHA 137 A NH K + GF + LD + I + LT+ + E I A Sbjct: 1649 ADNHFKDTYGFSI-----LD------------IVINNPVNLTIHFGGEKG-KRIRENYSA 1690 Query: 138 IV--------LKVQGISSGIDLAASIH-----GGLIC---YQMPKYSI-EKIDF------ 174 ++ LK + I I+ ++ + GL+ + P ++ EK F Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750 Query: 175 -IFPIHLIYSGYK-------TPTAQVLKKISYIEIEY----------PEINEINQKIYAL 216 + P ++G+ A V+ S +E+ + P +E+ + Y + Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR-DELGRSNYGM 1809 Query: 217 M----GKL-SQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIV-WKLREQPHI 270 + G++ + S +AL Q ++E +G L EIV + + Q ++ Sbjct: 1810 IAINPGRVAASFSQEAL---------------QYVVERVGKRTGWLVEIVNYNVENQQYV 1854 Query: 271 MASKISGSGLGDCVIALGKGDLNSL-PYQSVNCHMHAKGIDIVPITPSHS 319 A GDL +L +V + + IDI+ + S S Sbjct: 1855 AA-----------------GDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887 >3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Score = 40.0 bits (93), Expect = 8e-04 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 28/222 (12%) Query: 73 FSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEIL 132 ++ + GF ++ + GL SSA+ A+T E + + Sbjct: 77 IDHLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCA--SIALSELTQKPLP 134 Query: 133 TTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLI----YSGYKTP 188 + L G S + + K S + + +H + + P Sbjct: 135 SIDEQAQLSRLG---SGSSCRSFYAPWALWTGDKVSAIDLPYKDLLHQVIVISSQEKEIP 191 Query: 189 TAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQ---------- 238 + K + + L+ A NK+ + Q Sbjct: 192 SRVAHKLVKTSPFYETRSERAEANLKLLL--------NAFENKDWTSIYQICWHEFLDMH 243 Query: 239 AMNRQQGLLETLGVSDS-KLSEIVWKLREQPHIMASKISGSG 279 + + + ++ + ++ K + +G Sbjct: 244 QLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG 285 >2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 135 Score = 30.2 bits (68), Expect = 0.64 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGS 63 V A G GE GV+ GH LV + + K+ LI + + Sbjct: 23 VIARGV---EGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPD 73 >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3dyb_A* 3gt3_A* 3gt4_A* 3dw3_X 1bjr_E 1cnm_A 1oyo_A* ... Length = 279 Score = 29.3 bits (64), Expect = 1.2 Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 4/87 (4%) Query: 61 CGSLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTL 120 G+ D SFS ++ P I + S A VA AA L + Sbjct: 180 VGASDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYL-M 238 Query: 121 QYHKEPSPDE---ILTTAHAIVLKVQG 144 K + I TA+ L Sbjct: 239 TLGKTTAASACRYIADTANKGDLSNIP 265 >2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A Length = 133 Score = 29.1 bits (65), Expect = 1.5 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYC 61 VS GE G+L GH LV + K + I + + Sbjct: 23 VSVKAK---SGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVR 71 >2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A Length = 138 Score = 28.3 bits (63), Expect = 2.4 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDS 55 V P + G+ G+L HA L+ A+ V+ R+ I + Sbjct: 22 VILPST---TGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMG 64 >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Length = 399 Score = 28.1 bits (62), Expect = 3.0 Identities = 9/41 (21%), Positives = 14/41 (34%) Query: 104 GSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQG 144 G AA ++ L +Q + E L +V G Sbjct: 76 GVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPG 116 >2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 160 Score = 28.0 bits (62), Expect = 3.2 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDS 55 V+ P G GVL H V + V+ + + I Sbjct: 52 VNLPAK---SGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISG 94 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.0 bits (61), Expect = 3.2 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 11/25 (44%) Query: 191 QVLKKISYIEIEYPEINEINQKIYA 215 Q LKK+ + + K+YA Sbjct: 20 QALKKL-----------QASLKLYA 33 >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain, hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 Score = 27.3 bits (59), Expect = 4.1 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%) Query: 105 SSAAITVAITAALLTLQYHKEPSPDEI----LTTAHAI 138 S A V+ A L+ YH E S ++ TA + Sbjct: 369 SMATPHVSGVATLV-WSYHPECSASQVRAALNATADDL 405 >2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H Length = 168 Score = 27.3 bits (60), Expect = 5.4 Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 3/26 (11%) Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAI 35 V P G G+L H + + Sbjct: 58 VDVPTQ---TGAFGILAAHVPTLQVL 80 >2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H Length = 138 Score = 27.2 bits (60), Expect = 5.6 Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 13/89 (14%) Query: 9 CVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM 68 V+ P G GVL H V + V+ + + I S A Sbjct: 29 QVNLPAK---SGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFI---------SGGFAT 76 Query: 69 FHPSFSFIIMAINHIKPSCGFDLKVISQL 97 P + AI P F + I L Sbjct: 77 VQPDSQLCVTAIE-AFPLESFSQENIKNL 104 >1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Length = 345 Score = 27.0 bits (59), Expect = 6.1 Identities = 12/49 (24%), Positives = 18/49 (36%) Query: 109 ITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHG 157 + + AA L + P+EI A A++ Q A I G Sbjct: 43 LEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVG 91 >2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* Length = 146 Score = 26.8 bits (59), Expect = 6.7 Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%) Query: 9 CVSAPGSLVLMGEHGVLHGHAALVFAI 35 V P G G+L H + + Sbjct: 35 QVDVPTQ---TGAFGILAAHVPTLQVL 58 >3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 1k7y_A* 1k98_A* 1bmt_A* Length = 579 Score = 26.5 bits (58), Expect = 8.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Query: 267 QPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIV 312 +P I ASK G VIA KGD++ + V + +IV Sbjct: 85 EPFIEASKEQCKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIV 130 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.400 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,703,950 Number of extensions: 122231 Number of successful extensions: 344 Number of sequences better than 10.0: 1 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 40 Length of query: 324 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 231 Effective length of database: 3,438,538 Effective search space: 794302278 Effective search space used: 794302278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.1 bits)