RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus
Liberibacter asiaticus str. psy62]
(324 letters)
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 135 bits (339), Expect = 1e-32
Identities = 83/369 (22%), Positives = 131/369 (35%), Gaps = 62/369 (16%)
Query: 7 KICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDL 66
+ VSAPG ++L GEH V+HG AL A+N R L L + + ++++ D+
Sbjct: 5 VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDV 64
Query: 67 AMFHPSFSFIIMAINHIKPSC--------------------------------------- 87
A + + + P+
Sbjct: 65 ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQR 124
Query: 88 ---GFDLKVISQLDSQLGLGSSAAITVAITAALLTL--------------QYHKEPSPDE 130
D+ V S+L GLGSSAA +V + AALLT E
Sbjct: 125 TLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKS 184
Query: 131 ILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLIYSGYKTPTA 190
I A+ + G SG+D + S GG + YQ K S K I L + T
Sbjct: 185 INKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLKRLPALQILLTNTKVPRSTK 244
Query: 191 QVLKKISYIEIEYP----EINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGL 246
++ + I++P + I ++ A + VL + M+ Q
Sbjct: 245 ALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHH 304
Query: 247 LETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHA 306
L LGV + L ++ H + SK++G+G G C I L K L ++ +
Sbjct: 305 LNALGVGHASLDQLCQVTAA--HGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTG 362
Query: 307 KGIDIVPIT 315
G D +
Sbjct: 363 CGFDCWETS 371
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 133 bits (336), Expect = 5e-32
Identities = 61/281 (21%), Positives = 118/281 (41%), Gaps = 11/281 (3%)
Query: 11 SAPGSLVLMGEHGVLHGHAALVFAINK-RVILYLTLRKDRLINIDSSLGQYCGSLDLAMF 69
+ G ++L+GEH V G A+ N ++ + + + + S Y G L A
Sbjct: 10 ESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDV-YDGMLYDAPD 68
Query: 70 HPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPD 129
H S + + + + + + L GLGSSAA+ VA A K + +
Sbjct: 69 HLK-SLVNRFVELNNITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDF-LGKSLTKE 126
Query: 130 EILTTAHAIVLKVQGISSGIDLAASIHGGLICYQM-PKYSIEKIDFIFPIHLIYSGYKTP 188
E++ A+ G SGID + G + +Q +++ + + +I +G K
Sbjct: 127 ELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQKGHAETLKTLSLDGYMVVIDTGVKGS 186
Query: 189 TAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLE 248
T Q + + + + ++ + +GKL + + + + LA N L+
Sbjct: 187 TRQAVHDVHKLCEDPQYMSHVKH-----IGKLVLRASDVIEHHKFEALADIFNECHADLK 241
Query: 249 TLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGK 289
L VS K+ +++ +E +A K++G+G G ++ L K
Sbjct: 242 ALTVSHDKIEQLMKIGKEN-GAIAGKLTGAGRGGSMLLLAK 281
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 131 bits (331), Expect = 2e-31
Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 52/357 (14%)
Query: 6 HKICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSS--LGQYCG 62
+K+ V PG L + GE+ V+ GH A++ A+N+ + L L + + I +
Sbjct: 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPI 64
Query: 63 SLDLAMFHPSFSFIIMAIN--------HIKPSCGFDLKVISQLDSQLGLGSSAAITVAIT 114
+L ++F AIN + + ++L Q G + A T
Sbjct: 65 GGELKPDGEHWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAAT 124
Query: 115 AAL---LTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQ-------- 163
A+ L +++ E S + A L VQG S D+A+ ++GG I Y
Sbjct: 125 VAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVK 184
Query: 164 ---------------MPKYSIEKIDFIFPIHLI-YSGYKTPTAQVLKKISYIEIEYPEIN 207
P IE ++ P + ++G T +++ +I + E +
Sbjct: 185 HRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNY 244
Query: 208 EINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLETLG------VSDSKLSEIV 261
+ ++ + QA K+ ++L ++ + +L+ LG + S L E+
Sbjct: 245 QHFLTR---NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELA 301
Query: 262 WKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIVPITPSH 318
A K SGSG GDC IA K + + + GI +P
Sbjct: 302 DSAENMGG--AGKSSGSGGGDCGIAFSKTKELA---EKLVNEWEKLGIKHLPFHTGR 353
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 131 bits (329), Expect = 2e-31
Identities = 77/326 (23%), Positives = 143/326 (43%), Gaps = 41/326 (12%)
Query: 6 HKICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD 65
+ + P ++L GEH V++G+ A+ AI+ + + ++ I ++ + L+
Sbjct: 4 SHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLN 63
Query: 66 LAMF-------HPSFSFIIMAINH------IKPSCGFDLKVISQLDSQLGLGSSAAITVA 112
L F + + AI + I+P GF + + S++ GLGSSA+IT+
Sbjct: 64 LNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIG 123
Query: 113 ITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKI 172
A+ Y+KE DEI + + ++QG +S D + + G++ + K+ K
Sbjct: 124 TIKAVSGF-YNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKG 182
Query: 173 DFIF------PIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQ 226
+F + + K TA+++ +++ IE + EI+ ++ +
Sbjct: 183 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEID-----------KVIDE 231
Query: 227 ALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIA 286
AL+ KN + + M + LL+ L +S KL IV +K++G+G G CVI
Sbjct: 232 ALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNR--FGFGAKLTGAGGGGCVII 289
Query: 287 LGKGD--------LNSLPYQSVNCHM 304
L + LN + NC M
Sbjct: 290 LVNEEKEKELLKELNKEDVRIFNCRM 315
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 120 bits (301), Expect = 5e-28
Identities = 53/313 (16%), Positives = 98/313 (31%), Gaps = 35/313 (11%)
Query: 7 KICVSAPGSLVLMGEHGVLH-GHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLD 65
I V G L GE+ +L G AL+ I + + I S + + L
Sbjct: 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYM--RAEIAFSDSYRIYSDMFDFAVDLR 60
Query: 66 LAMFHPSFSFIIMAINHI--------KPSCGFDLKVISQLDSQLGLGSSAAITVAITAAL 117
+P +S I I + + F L + +++ + + + +
Sbjct: 61 ---PNPDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVV 117
Query: 118 LTLQ--YHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMP-----KYSIE 170
L Y+ + + A++LK S DLA L+ YQ +E
Sbjct: 118 KALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLE 177
Query: 171 KIDFIFPIHLIYSGYKTPT----------AQVLKKISYIEIEYPEINEINQKIYALMGKL 220
+ + + + + + + INQ +
Sbjct: 178 EENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHMVQQIKQNINQNFLTSSKET 237
Query: 221 SQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDS--KLSEIVWKLREQPHIMASKISGS 278
+AL + + + + LLE L L ++ ++ +K SG+
Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA--VAKSSGA 295
Query: 279 GLGDCVIALGKGD 291
G GDC IAL
Sbjct: 296 GGGDCGIALSFDA 308
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 109 bits (273), Expect = 7e-25
Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 12/283 (4%)
Query: 12 APGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD-RLINIDSSLGQYCGSLDLAM-- 68
G ++L GEH V+HG A+V I++ L + + +D G +
Sbjct: 18 GYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRPAIPGYIAQKRDE 77
Query: 69 FHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSP 128
+ ++ + G + + L G+G+SA+ VA + AL L
Sbjct: 78 QIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDE 137
Query: 129 DEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIH----LIYSG 184
+ L+ G SG D A+ +GGLI Y+ F ++ +G
Sbjct: 138 EVNLSAFVGE-GGYHGTPSGADNTAATYGGLILYRRQNGKSVFKPIAFQQRLYLVVVGTG 196
Query: 185 YKTPTAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQ 244
TA+V+ + ++ + P + ++Y + + +AL+ +L+ L Q MN
Sbjct: 197 INASTAKVVNDVHKMKQQQPVQFK---RLYDNYTHIVSQAREALQKGDLQRLGQLMNANH 253
Query: 245 GLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIAL 287
L + VS +L IV R + +K+SG+G G +AL
Sbjct: 254 DLCRQIDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVAL 295
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 109 bits (272), Expect = 9e-25
Identities = 56/307 (18%), Positives = 123/307 (40%), Gaps = 25/307 (8%)
Query: 11 SAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAMFH 70
A ++L+GEH V++G+ A+ + + + +++ +S Y +
Sbjct: 9 QAHSKIILIGEHAVVYGYPAISLPLLEVEV------TCKVVPAESPWRLY----EEDTLS 58
Query: 71 PSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDE 130
+ + +N + ++ S + + G+GSSAAI++A A+ Y + D
Sbjct: 59 MAVYASLEYLNITEA--CIRCEIDSAIPEKRGMGSSAAISIAAIRAVFD-YYQADLPHDV 115
Query: 131 ILTTAHAIVLKVQGISSGIDLAASIHGGLI-CYQMPKYSIEKIDFIFPIHLIYSGYKTPT 189
+ + + SG+D + I + ++ ++D + + +G T
Sbjct: 116 LEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKNVGFTELEMDLSAYLVIADTGVYGHT 175
Query: 190 AQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNRQQGLLET 249
+ ++ + +G+L+Q + A+ K+ + L Q +++ L+
Sbjct: 176 REAIQV-------VQNKGKDALPFLHALGELTQQAEIAISQKDAEGLGQILSQAHLHLKE 228
Query: 250 LGVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGI 309
+GVS + +V + +K+SG GLG C+IAL ++ Q + + KG
Sbjct: 229 IGVSSLEADSLVETALSH-GALGAKMSGGGLGGCIIALVTNLTHA---QELAERLEEKGA 284
Query: 310 DIVPITP 316
I
Sbjct: 285 VQTWIES 291
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 102 bits (255), Expect = 9e-23
Identities = 52/332 (15%), Positives = 106/332 (31%), Gaps = 49/332 (14%)
Query: 9 CVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM 68
+PG + L+GEH +G +I LR+D+ + + S G ++ +
Sbjct: 50 YFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDL 109
Query: 69 FHPSFSFIIMAINHIK------------PSCGFDLKVISQLDSQLGLGSSAAITVAITAA 116
+ N++K GF+L + ++ + GL SSA++ + +
Sbjct: 110 DEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVV 169
Query: 117 LLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG---LICYQMPKYSIEKID 173
L L P + + + S +D A G I E +
Sbjct: 170 LDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVP 229
Query: 174 FIFP---IHLIYSGYKTPTAQVLKKISYIEIEY--------------------------- 203
I ++ + + + E
Sbjct: 230 VELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTD 289
Query: 204 ---PEINEINQKIYALMGKLSQISCQALRNKNLKVLAQAMNR-QQGLLETLGVSDSKLSE 259
E + ++I+ +A NL + +N L + V+ +L
Sbjct: 290 LIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDT 349
Query: 260 IVWKLREQPHIMASKISGSGLGDCVIALGKGD 291
+ ++Q ++ ++++G+G G C IAL D
Sbjct: 350 LAETAQKQAGVLGARMTGAGFGGCAIALVAHD 381
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 102 bits (253), Expect = 2e-22
Identities = 60/331 (18%), Positives = 107/331 (32%), Gaps = 48/331 (14%)
Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLA 67
+ VSAPG + L+GEH + L A+ +L + RKD L+++ ++ L
Sbjct: 37 LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQ 96
Query: 68 MFHPSFSFII--------------MAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAI 113
P+ + + P GF V+S + GL SSA++ VA
Sbjct: 97 FPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVAT 156
Query: 114 TAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIH----GGLICYQMPKYSI 169
L L + G+ GI G +
Sbjct: 157 YTFLQQL-CPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET 215
Query: 170 EKIDFIFPIH---LIYSGYKTPT---------------AQVLKKISYIEIEYPEINEINQ 211
+ P + S + A+ L K S E++ E+
Sbjct: 216 SLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARD 275
Query: 212 KIYALMGKLSQISCQ----------ALRNKNLKVLAQAMNR-QQGLLETLGVSDSKLSEI 260
+ + ++ ALR + + + M + L + VS +L ++
Sbjct: 276 LVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQL 335
Query: 261 VWKLREQPHIMASKISGSGLGDCVIALGKGD 291
V P + S+++G G G C + L +
Sbjct: 336 VEAALAVPGVYGSRMTGGGFGGCTVTLLEAS 366
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 90.4 bits (223), Expect = 4e-19
Identities = 48/343 (13%), Positives = 99/343 (28%), Gaps = 33/343 (9%)
Query: 8 ICVSAPGSLVLMGEH------GVLHGHAALVFAINKRVILYLTLRKDRLINIDSS---LG 58
+ AP L L G ++G L IN + I I++
Sbjct: 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCC 63
Query: 59 QYCGSLDLAMFHPSFSFIIMAINHIK-----PSCGFDLKVISQLDSQLGLGSSAAITVAI 113
+ S+ S I N I F + + + GLG+S+ + V I
Sbjct: 64 KSYLSMSQLEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCI 123
Query: 114 TAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKID 173
A + + + D A+ GG + + + ++
Sbjct: 124 LKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVN 183
Query: 174 FIFPIHLIYSGYKTPTAQVLKKISYI--EIEYPEINEINQKIYALMGKLSQISC------ 225
+ I ++ S I + ++ + + +I
Sbjct: 184 PLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTK 243
Query: 226 QALRNKNLKVLAQAMNRQQGLLETL--GVSDSKLSEIVWKLREQPHIMASKISGSGLGDC 283
AL ++ A+ + + + +++ + E MA K+SG+G G
Sbjct: 244 LALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGF 302
Query: 284 VIALGKGD--------LNSLPYQSVNCHMHAKGIDIVPITPSH 318
++ + + LN+L + G I +
Sbjct: 303 IMFVVEPTRKEEVVRALNNLNGFVMPFQFIDDGAHGWKIYSTD 345
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 88.5 bits (218), Expect = 2e-18
Identities = 56/317 (17%), Positives = 107/317 (33%), Gaps = 35/317 (11%)
Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLA 67
I V +PG + L+GEH + AIN + + ++ + + SL+
Sbjct: 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHFGEERKFSLNDL 61
Query: 68 MFHPSFSFIIMAINHI-----KPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQY 122
S+ + I + G +V L GL SSA+ V I L L Y
Sbjct: 62 RKENSWIDYVKGIFWVLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKL-Y 120
Query: 123 HKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG------LICYQMPKYSIEKIDFIF 176
+ + + A + G+ GI ++ G + Y
Sbjct: 121 NLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDV 180
Query: 177 PIHLIYSGYKTPT---------------AQVLKKISYIEIEYPEINEINQKIYALMGKLS 221
I + Y+G + ++L K S E+ E++++ G +
Sbjct: 181 SILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIV 240
Query: 222 QISCQALRNKNL-------KVLAQAMNRQQGLLETLGVSDSKLSEIVWKLREQPHIMASK 274
+ + + L ++ +V L + VS +L V + + ++
Sbjct: 241 RENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGAR 299
Query: 275 ISGSGLGDCVIALGKGD 291
++G+G G IAL +
Sbjct: 300 LTGAGFGGSAIALVDKE 316
>2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA
ANP; 2.40A {Saccharomyces cerevisiae}
Length = 548
Score = 65.3 bits (158), Expect = 2e-11
Identities = 55/325 (16%), Positives = 98/325 (30%), Gaps = 47/325 (14%)
Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDR-----LINIDSSLGQYCG 62
+PG + L+GEH + L AI+ ++ + + ++ LIN D Q
Sbjct: 66 FVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKF 125
Query: 63 SLD----------------------LAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQ 100
L L + H + P G + + +
Sbjct: 126 DLPLDGSYVTIDPSVSDWSNYFKCGLHVAHSFLKKLAPERFASAPLAGLQVFCEGDVPTG 185
Query: 101 LGLGSSAAITVAITAALLT--LQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG 158
GL SSAA A+ A++ + S ++ V + G+D AAS+ G
Sbjct: 186 SGLSSSAAFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVNNGGMDQAASVCGE 245
Query: 159 ----LICYQMPKYSIEKIDFIFPIHLIYSGYKTPTAQVLKKISYIEIEYPEINEINQKIY 214
L P+ F + S T V K Y
Sbjct: 246 EDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPTNYNLRVVEVTTAA 305
Query: 215 ALMGK-----------LSQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIVWK 263
++ S + LR+ A+ N + +L++++
Sbjct: 306 NVLAATYGVVLLSGKEGSSTNKGNLRDFMNVYYARYHNISTPWNGDIESGIERLTKMLVL 365
Query: 264 LREQPHIMASKISGSGLGDCVIALG 288
+ E +A+K G + D +L
Sbjct: 366 VEES---LANKKQGFSVDDVAQSLN 387
Score = 38.8 bits (89), Expect = 0.002
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 224 SCQALRNKNLKVLAQAMNRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISGSGLGD 282
+ K MN Q + L S ++ +I S+++G+G G
Sbjct: 434 ASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDKICSIALS-NGSYGSRLTGAGWGG 492
Query: 283 CVIAL 287
C + L
Sbjct: 493 CTVHL 497
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 58.8 bits (141), Expect = 2e-09
Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 19/201 (9%)
Query: 8 ICVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKD---RLINIDSSLGQYCGSL 64
V APG + ++GEH G++ L A+ + V++ + K +L N + + S
Sbjct: 56 FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSA 115
Query: 65 DLAMF----HPSFSFIIMAINHI------KPSCGFDLKVISQLDSQLGLGSSAAITVAIT 114
+ ++ + + I G + V + GL SS+A+
Sbjct: 116 NNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAG 175
Query: 115 AALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHGG-----LICYQMPKYSI 169
LT+ E+ + G+D + S LI + + +
Sbjct: 176 LVTLTVLGRNLS-KVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATD 234
Query: 170 EKIDFIFPIHLIYSGYKTPTA 190
K+ + S + A
Sbjct: 235 VKLPSGAVFVIANSCVEMNKA 255
Score = 45.3 bits (106), Expect = 2e-05
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 225 CQALRNKNLKVLAQAMNR-QQGLLETLGVSDSKLSEIVWKLREQPHIMASKISGSGLGDC 283
C+ +++L + MN+ + S +L ++V R+ S+++G+G G C
Sbjct: 369 CEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGC 427
Query: 284 VIALGKGD 291
+++ D
Sbjct: 428 TVSMVPAD 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 48.4 bits (115), Expect = 2e-06
Identities = 74/443 (16%), Positives = 122/443 (27%), Gaps = 202/443 (45%)
Query: 1 MGQCLHKICVSAPGS------LVLMG-EHGVLHG---HAALV---------FAINKRVIL 41
+G + S G L L E+ L G HA K +I
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 42 -YLTLR---KDRLINIDSSL-----------------GQYCGSLD-----LAMFH---PS 72
Y+T R K +S GQ G+ D L +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFEELRDLYQTYHV 182
Query: 73 F--SFIIMAINHIK-----PSC-------GFD-LKVISQLDSQLGLG--SSAAITV---- 111
I + + G + L+ + + S I+
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 112 -------AITAALLTLQYHKEPSPDEIL-----TTAHAIVLKVQGISSGIDLAAS----- 154
+TA LL +P E+ T H+ QG+ + + +A +
Sbjct: 243 VIQLAHYVVTAKLLGF------TPGELRSYLKGATGHS-----QGLVTAVAIAETDSWES 291
Query: 155 --------------IHGGLICYQ-MPKYSIEKIDFIFPIHL---IYSGYKTPT------- 189
I G+ CY+ P S+ P L + + P+
Sbjct: 292 FFVSVRKAITVLFFI--GVRCYEAYPNTSLP------PSILEDSLENNEGVPSPMLSISN 343
Query: 190 ---AQVLKKI----SYIEIEYPEINEINQKIYALMGKLSQISCQALRN--KNLKVLAQAM 240
QV + S++ P +++ IS L N KNL V++
Sbjct: 344 LTQEQVQDYVNKTNSHL----PA----GKQVE--------IS---LVNGAKNL-VVS--- 380
Query: 241 NRQQGLLETL-GVSDSKLSEIVWKLREQPHIMASKISGSGLGDCVIALGKGDLNSLPYQS 299
G ++L G + LR+ A SGL D + +P+
Sbjct: 381 ----GPPQSLYG--------LNLTLRK---AKAP----SGL----------DQSRIPFSE 411
Query: 300 --VNCHMHAKGIDIVPIT-PSHS 319
+ +P+ P HS
Sbjct: 412 RKLKFSNR-----FLPVASPFHS 429
Score = 27.6 bits (61), Expect = 4.3
Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 100/290 (34%)
Query: 79 AINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAAL-LTLQYHKEPSPDEILTTAHA 137
A NH K + GF + LD + I + LT+ + E I A
Sbjct: 1649 ADNHFKDTYGFSI-----LD------------IVINNPVNLTIHFGGEKG-KRIRENYSA 1690
Query: 138 IV--------LKVQGISSGIDLAASIH-----GGLIC---YQMPKYSI-EKIDF------ 174
++ LK + I I+ ++ + GL+ + P ++ EK F
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 175 -IFPIHLIYSGYK-------TPTAQVLKKISYIEIEY----------PEINEINQKIYAL 216
+ P ++G+ A V+ S +E+ + P +E+ + Y +
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR-DELGRSNYGM 1809
Query: 217 M----GKL-SQISCQALRNKNLKVLAQAMNRQQGLLETLGVSDSKLSEIV-WKLREQPHI 270
+ G++ + S +AL Q ++E +G L EIV + + Q ++
Sbjct: 1810 IAINPGRVAASFSQEAL---------------QYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 271 MASKISGSGLGDCVIALGKGDLNSL-PYQSVNCHMHAKGIDIVPITPSHS 319
A GDL +L +V + + IDI+ + S S
Sbjct: 1855 AA-----------------GDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.27A
{Legionella pneumophila}
Length = 323
Score = 40.0 bits (93), Expect = 8e-04
Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 28/222 (12%)
Query: 73 FSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTLQYHKEPSPDEIL 132
++ + GF ++ + GL SSA+ A+T E + +
Sbjct: 77 IDHLVRLKEYFGYVGGFLIQSSNNFPHSSGLASSASSFAALTKCA--SIALSELTQKPLP 134
Query: 133 TTAHAIVLKVQGISSGIDLAASIHGGLICYQMPKYSIEKIDFIFPIHLI----YSGYKTP 188
+ L G S + + K S + + +H + + P
Sbjct: 135 SIDEQAQLSRLG---SGSSCRSFYAPWALWTGDKVSAIDLPYKDLLHQVIVISSQEKEIP 191
Query: 189 TAQVLKKISYIEIEYPEINEINQKIYALMGKLSQISCQALRNKNLKVLAQ---------- 238
+ K + + L+ A NK+ + Q
Sbjct: 192 SRVAHKLVKTSPFYETRSERAEANLKLLL--------NAFENKDWTSIYQICWHEFLDMH 243
Query: 239 AMNRQQGLLETLGVSDS-KLSEIVWKLREQPHIMASKISGSG 279
+ + + ++ + ++ K + +G
Sbjct: 244 QLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG 285
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
F1-ATPase, single particle analysis,
thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Length = 135
Score = 30.2 bits (68), Expect = 0.64
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGS 63
V A G GE GV+ GH LV + + K+ LI + +
Sbjct: 23 VIARGV---EGELGVMAGHIPLVTPLKTAPVRIKQGDKETLIAVSGGFLEVRPD 73
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3dyb_A* 3gt3_A* 3gt4_A* 3dw3_X
1bjr_E 1cnm_A 1oyo_A* ...
Length = 279
Score = 29.3 bits (64), Expect = 1.2
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 61 CGSLDLAMFHPSFSFIIMAINHIKPSCGFDLKVISQLDSQLGLGSSAAITVAITAALLTL 120
G+ D SFS ++ P I + S A VA AA L +
Sbjct: 180 VGASDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYL-M 238
Query: 121 QYHKEPSPDE---ILTTAHAIVLKVQG 144
K + I TA+ L
Sbjct: 239 TLGKTTAASACRYIADTANKGDLSNIP 265
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 29.1 bits (65), Expect = 1.5
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYC 61
VS GE G+L GH LV + K + I + +
Sbjct: 23 VSVKAK---SGELGILPGHIPLVAPLEISAARLKKGGKTQYIAVSGGFLEVR 71
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, ATP synthesis, CF1, hydrogen ION transport,
hydrolase; NMR {Thermosynechococcus elongatus} PDB:
2rq7_A
Length = 138
Score = 28.3 bits (63), Expect = 2.4
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDS 55
V P + G+ G+L HA L+ A+ V+ R+ I +
Sbjct: 22 VILPST---TGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMG 64
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor
antagonist, phosphatase serine kinase, ATPase, unknown
function; 2.60A {Mycobacterium tuberculosis}
Length = 399
Score = 28.1 bits (62), Expect = 3.0
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 104 GSSAAITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQG 144
G AA ++ L +Q + E L +V G
Sbjct: 76 GVEAAAVMSQLRTALRMQISAGYTVVEALEAVDRFHKQVPG 116
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr
inner membrane, transmembrane; HET: ANP; 3.01A
{Saccharomyces cerevisiae}
Length = 160
Score = 28.0 bits (62), Expect = 3.2
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDS 55
V+ P G GVL H V + V+ + + I
Sbjct: 52 VNLPAK---SGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISG 94
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.2
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 11/25 (44%)
Query: 191 QVLKKISYIEIEYPEINEINQKIYA 215
Q LKK+ + + K+YA
Sbjct: 20 QALKKL-----------QASLKLYA 33
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain, hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 27.3 bits (59), Expect = 4.1
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 105 SSAAITVAITAALLTLQYHKEPSPDEI----LTTAHAI 138
S A V+ A L+ YH E S ++ TA +
Sbjct: 369 SMATPHVSGVATLV-WSYHPECSASQVRAALNATADDL 405
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 27.3 bits (60), Expect = 5.4
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 10 VSAPGSLVLMGEHGVLHGHAALVFAI 35
V P G G+L H + +
Sbjct: 58 VDVPTQ---TGAFGILAAHVPTLQVL 80
>2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+
transporting), F1FO, F1- ATPase, hydrolase; HET: ANP;
2.80A {Saccharomyces cerevisiae} PDB: 3fks_H
Length = 138
Score = 27.2 bits (60), Expect = 5.6
Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 9 CVSAPGSLVLMGEHGVLHGHAALVFAINKRVILYLTLRKDRLINIDSSLGQYCGSLDLAM 68
V+ P G GVL H V + V+ + + I S A
Sbjct: 29 QVNLPAK---SGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFI---------SGGFAT 76
Query: 69 FHPSFSFIIMAINHIKPSCGFDLKVISQL 97
P + AI P F + I L
Sbjct: 77 VQPDSQLCVTAIE-AFPLESFSQENIKNL 104
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide
binding fold; 1.86A {Pectobacterium carotovorum} SCOP:
a.46.2.1 c.27.1.1 PDB: 1kgz_A
Length = 345
Score = 27.0 bits (59), Expect = 6.1
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 109 ITVAITAALLTLQYHKEPSPDEILTTAHAIVLKVQGISSGIDLAASIHG 157
+ + AA L + P+EI A A++ Q A I G
Sbjct: 43 LEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPDYDFADIVG 91
>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase
(H+ transporting), F1FO ATP synthase, F1-ATPase,
hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos
taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H*
2jdi_H* 2v7q_H*
Length = 146
Score = 26.8 bits (59), Expect = 6.7
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 9 CVSAPGSLVLMGEHGVLHGHAALVFAI 35
V P G G+L H + +
Sbjct: 35 QVDVPTQ---TGAFGILAAHVPTLQVL 58
>3bul_A Methionine synthase; transferase, reactivation conformation,
cobalamin, intermodular interactions, amino-acid
biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli}
SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 1k7y_A* 1k98_A*
1bmt_A*
Length = 579
Score = 26.5 bits (58), Expect = 8.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 267 QPHIMASKISGSGLGDCVIALGKGDLNSLPYQSVNCHMHAKGIDIV 312
+P I ASK G VIA KGD++ + V + +IV
Sbjct: 85 EPFIEASKEQCKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIV 130
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.400
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,703,950
Number of extensions: 122231
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 40
Length of query: 324
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 231
Effective length of database: 3,438,538
Effective search space: 794302278
Effective search space used: 794302278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)