HHsearch alignment for GI: 254781018 and conserved domain: COG1577
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism].
Probab=100.00 E-value=0 Score=354.29 Aligned_cols=296 Identities=25% Similarity=0.280 Sum_probs=234.3
Q ss_pred EEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99858179997445440795489987667279999984898299995576667532100123333433211111221033
Q gi|254781018|r 12 HSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIPIT 91 (337)
Q Consensus 12 ~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (337)
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~~~-----~~---~~~~~---~-------- 62 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLKSS-----TL---ERDED---E-------- 62 (307)
T ss_pred CCCCCCCEEEEECCEEEECCCHHHEEEEEEEEEEEEECCCCCEEEECCCCCCC-----CC---CCCCC---C--------
T ss_conf 32235308998113455187315135010089999966888579841677765-----54---56663---2--------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 47778889999987511566788769999805541038985303789999999998187754025899999986411577
Q gi|254781018|r 92 SVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHG 171 (337)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~~~ 171 (337)
T Consensus 63 ---~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls-~~~l~~la~~~e~~vqG 138 (307)
T COG1577 63 ---GYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELS-PEELAKLANKVELIVQG 138 (307)
T ss_pred ---HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHCC
T ss_conf ---48999999999873325789847999627998878627999999999999986289889-89999999999998758
Q ss_pred CCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHH
Q ss_conf 877345787653263024027-8520014788439997497145379999999976412-----0689998765489999
Q gi|254781018|r 172 KTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQ-----SSIWSEFNAVTNEMME 245 (337)
Q Consensus 172 ~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~ 245 (337)
T Consensus 139 ~~Sg~D~a~~~~gg~v~~~~~~~~~~l~~~~~~~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~~ig~~~~~a~~ 218 (307)
T COG1577 139 KASGIDIATITYGGLVAFKKGFDFEKLEIELLGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILDAIGELVQEAEA 218 (307)
T ss_pred CCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98761403886188899845887520135667718999748866089999999999986467789999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCHH-HH-HHHCCC
Q ss_conf 9983872168999999599999718997799999999985798-08950788678850899998579979-99-974598
Q gi|254781018|r 246 NIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNPE-KL-SSLYGY 322 (337)
Q Consensus 246 al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~-~~-~~~~~~ 322 (337)
T Consensus 219 al~~~d~e~lgelm~~nq~LL~~LgVs~~~L~~lv~~a~~~Ga~gaKlTGAG---gGGc~IaL~~~~~~~~~l~~~~~~~ 295 (307)
T COG1577 219 ALQTGDFEELGELMNINQGLLKALGVSTPELDELVEAARSLGALGAKLTGAG---GGGCIIALAKNEEIAETLSNRLEKA 295 (307)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC---CCCEEEEEECCCHHHHHHHHHHHHC
T ss_conf 9861649999999999998898658486899999999986695100214688---8866999835515899999888865
Q ss_pred EEEEEEECCCCEE
Q ss_conf 6999998799709
Q gi|254781018|r 323 TCYKIKEDKNGTM 335 (337)
Q Consensus 323 ~~~~~~~~~~G~~ 335 (337)
T Consensus 296 ~i~~~~~--~~v~ 306 (307)
T COG1577 296 GIALLWI--EGVR 306 (307)
T ss_pred CCCHHCC--CCCC
T ss_conf 8630000--4356