HHsearch alignment for GI: 254781018 and conserved domain: PRK01123
>PRK01123 shikimate kinase; Provisional.
Probab=99.89 E-value=6e-20 Score=144.42 Aligned_cols=256 Identities=16% Similarity=0.102 Sum_probs=161.4
Q ss_pred CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 95489987667279999984898299995576667532100123333433211111221033477788899999875115
Q gi|254781018|r 30 GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHL 109 (337)
Q Consensus 30 G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (337)
T Consensus 19 tg~G~a~~idL~~~a~v~~~~~~~~~~~~~----------------~~~~~~----~~~l~~-------~~~~~~~~~-- 69 (283)
T PRK01123 19 TGKGAAFGIDLKTTATVELSDSGSKIKGEV----------------SGYPDA----DTRLVE-------RCVELVLER-- 69 (283)
T ss_pred CCCCCEEEECCEEEEEEEECCCCCCCCCCC----------------CCCCCC----CHHHHH-------HHHHHHHHH--
T ss_conf 286516763645999999877776444200----------------578875----638999-------999999986--
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHCCCE
Q ss_conf 667887699998055410389853037899999999981877540258999999864115778--773457876532630
Q gi|254781018|r 110 PHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGK--TGIIDSTTIVMGGII 187 (337)
Q Consensus 110 ~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~~~~--~sg~D~~~~~~gg~~ 187 (337)
T Consensus 70 ~~i~~g~~i~i~s~IP~~~GL~SSSA~a~A~i~a~~~~~~~~Ls-~~ei~~la~ea~~~~g~siTGa~DDa~As~~GG~~ 148 (283)
T PRK01123 70 FGIDYGGTVRTESEIPVASGLKSSSAAANALVLATLDALGEKLD-DLDILRLGVKASKEAGVTVTGAFDDACASYFGGVC 148 (283)
T ss_pred CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEE
T ss_conf 29987759999558986678537899999999999998589989-99999999998620781523675116677449779
Q ss_pred EEECCCCCCCCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 2402785200147-884399974971453799999999764120689998765489999998387216899999959999
Q gi|254781018|r 188 YINPPQIIKNETL-VGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLL 266 (337)
Q Consensus 188 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll 266 (337)
T Consensus 149 ltdn~~~~ii~~~~~~~~~vV~ip~~~~~t~~~---------~~~~~~~i~~~~~~a~~~~~~g~~~---~Am~~Ngl~~ 216 (283)
T PRK01123 149 VTDNREMKILKRDEVEGPVVVLIPPEKAFSANV---------DVERMKLIAPYVEMAFELALAGDYF---KAMTLNGLLY 216 (283)
T ss_pred EEECCCCEEEECCCCCCCEEEEECCCCCCCCCC---------CHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHH
T ss_conf 981887436651489985899989977737627---------6788877438999999998779898---9987502642
Q ss_pred -HHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCHHHHHHH-CC-CEEEEEEECCCCEEE
Q ss_conf -9718997799999999985798-0895078867885089999857997999974-59-869999987997092
Q gi|254781018|r 267 -ESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLSSL-YG-YTCYKIKEDKNGTML 336 (337)
Q Consensus 267 -~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~G~~i 336 (337)
T Consensus 217 ~~~l~~~~----~~~~~al~~GAlga~iSGsGP-----si~al~~~e~~~~v~ea~~~~G~vi~t~i~n~g~~~ 281 (283)
T PRK01123 217 SSALGFPT----EPILDALEAGAVGAGLSGTGP-----SYVALFDEENPEEVKEAWSKYGKVIVTKINNRGARY 281 (283)
T ss_pred HHHCCCCH----HHHHHHHHCCCEEEEEECCCC-----EEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEE
T ss_conf 45417987----999999975984999826898-----799998077679999999867988999565987355