HHsearch alignment for GI: 254781018 and conserved domain: PRK03188
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.
Probab=99.90 E-value=3.8e-21 Score=151.99 Aligned_cols=280 Identities=13% Similarity=0.139 Sum_probs=178.7
Q ss_pred EEEECCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899858179997----44544-0795489987667279999984898299995576667532100123333433211111
Q gi|254781018|r 11 AHSIAPAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIA 85 (337)
Q Consensus 11 ~~~~APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T Consensus 1 it~~apAKINL~L~V~~kr~dGyH~l~s~~~~i~l~D~i~i~~~~~~~~~~~~~~~~~-------~P---~d~------- 63 (299)
T PRK03188 1 VTVRAPGKVNLHLGVGPLREDGYHELATVFQAVSLYDEVTVTPADDLSLTVSGEGADQ-------VP---TDE------- 63 (299)
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEECCCCCC-------CC---CCC-------
T ss_conf 9797501282040338879999851358999936871999999999829995787344-------88---998-------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 22103347778889999987511566788769999805541038985303789999999998187754025899999986
Q gi|254781018|r 86 KKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYI 165 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~ 165 (337)
T Consensus 64 -~Nlv~kA~--------~~~~~~~-~~~~~~~I~l~K~IP~gaGLGGGSsdAAa~L~~ln~l~~l~ls~-~eL~~lA~~l 132 (299)
T PRK03188 64 -SNLAWRAA--------ELLAEHV-GRAPDVHIHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSR-DELLALAAEL 132 (299)
T ss_pred -CCHHHHHH--------HHHHHHH-CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHH
T ss_conf -64999999--------9999972-99997699999579776777740789999999999971799798-9999999861
Q ss_pred HHCCCCCCCCHHHHHHHHCCCEEEECC-CC-CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 411577877345787653263024027-85-2001478843999749714537999999997641206899987654899
Q gi|254781018|r 166 ERLQHGKTGIIDSTTIVMGGIIYINPP-QI-IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEM 243 (337)
Q Consensus 166 e~~~~~~~sg~D~~~~~~gg~~~~~~~-~~-~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~ 243 (337)
T Consensus 133 ---------GsDVPffL~gg~a~~~G~Ge~l~pl~~~~~~~~vlv~P~~~vST~~ay~~ld~~~~~~~~~~~~-~~~~~l 202 (299)
T PRK03188 133 ---------GSDVPFALLGGTALGTGRGEELAPVLARGTFHWVLAFADGGLSTPAVFRELDRLREAGPDPPRL-GDPEPL 202 (299)
T ss_pred ---------CCCCCEEEECCCEEEEECCCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCHHHH
T ss_conf ---------7887637627868999748676888767863799986899947299999777642366776566-787999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCH-HHH-HHH
Q ss_conf 9999838721689999995999997189-97799999999985798-0895078867885089999857997-999-974
Q gi|254781018|r 244 MENIQKKDAEKTYKSVRVNQSLLESIGV-VPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNP-EKL-SSL 319 (337)
Q Consensus 244 ~~al~~~d~~~l~~~~~~~~~ll~~l~v-s~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~-~~~-~~~ 319 (337)
T Consensus 203 ~~al~~gd~~~l~~~l~Nd---Le~~a~~l~P~i~~i~~~l~~~Ga~~a~mSGSGsT-----vFalf~~~~~A~~~a~~l 274 (299)
T PRK03188 203 LAALAAGDPAQLAPLLGND---LQAAALSLRPELRRTLRAGEEAGALAGIVSGSGPT-----CAFLCASADSAVDVAAAL 274 (299)
T ss_pred HHHHHCCCHHHHHHHHCCC---HHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCC-----EEEEECCHHHHHHHHHHH
T ss_conf 9999839999998871686---06778771909999999999679987899784401-----027978999999999999
Q ss_pred C--C--CEEEEEEECCCCEEE
Q ss_conf 5--9--869999987997092
Q gi|254781018|r 320 Y--G--YTCYKIKEDKNGTML 336 (337)
Q Consensus 320 ~--~--~~~~~~~~~~~G~~i 336 (337)
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~ 295 (299)
T PRK03188 275 SGAGVCRTVRVATGPVPGARV 295 (299)
T ss_pred HHCCCEEEEEECCCCCCCCEE
T ss_conf 757930489990588888562