HHsearch alignment for GI: 254781018 and conserved domain: PRK03926

>PRK03926 mevalonate kinase; Provisional.
Probab=100.00  E-value=0  Score=368.08  Aligned_cols=288  Identities=23%  Similarity=0.279  Sum_probs=231.1

Q ss_pred             EEEECCCEEEEECCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             89985817999744544079548998766727999998489829999557666753210012333343321111122103
Q gi|254781018|r   11 AHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIPI   90 (337)
Q Consensus        11 ~~~~APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (337)
T Consensus         3 i~asAPGrv~LiGEH~v~~G~~aia~AI~~~~~v~~~~~~d~i-~~~~~-~~------------~-~~~~~---------   58 (302)
T PRK03926          3 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTRVRAELNDDSI-YIQSD-YG------------K-TGEVH---------   58 (302)
T ss_pred             EEEEECEEEEEEECCEEECCCEEEEEEECCCEEEEEEECCCEE-EEECC-CC------------C-CCCHH---------
T ss_conf             9998078999993876986960899993781999999989906-99754-77------------6-54200---------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             34777888999998751156678876999980554103898530378999999999818775402589999998641157
Q gi|254781018|r   91 TSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQH  170 (337)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~~  170 (337)
T Consensus        59 ----~~~~~~l~~~~-~--~~~~~G~~i~I~S~iP~gaGLgSSAAl~va~~~al~~~~g~~ls-~~~la~la~~~E~~~~  130 (302)
T PRK03926         59 ----PYVRAAIEKVR-E--EADKDGVDLSITSQIPVGSGLGSSAAVTVATIGALNKLLGLGLS-LEEIAKMGHEVELLVQ  130 (302)
T ss_pred             ----HHHHHHHHHHH-H--HCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHC
T ss_conf             ----79999999999-7--56899837999656887778763899999999999985489989-9999999999998746


Q ss_pred             CCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
Q ss_conf             787734578765326302402785200147884399974971453799999999764120-----689998765489999
Q gi|254781018|r  171 GKTGIIDSTTIVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQS-----SIWSEFNAVTNEMME  245 (337)
Q Consensus       171 ~~~sg~D~~~~~~gg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~  245 (337)
T Consensus       131 G~~sGiD~~~s~~Gg~~~~~~~~~l--~~~-~~~l~l~~tg~~~~t~~~v~~v~~~~~~~~~~~~~~~~~~~~i~~~a~~  207 (302)
T PRK03926        131 GAASPTDTYVSTIGGFVTIPDRKKL--PFM-DCGIVVGYTGSSGSTKELVANVRKLYEEYPELIEPILESIGKLSEKAEE  207 (302)
T ss_pred             CCCCHHHHHHHHCCCEEEECCCCCC--CCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8997889999975998996678977--778-9788999839746599999999999876699999999999999999998


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCCCEEEEEEEECCCHHHHH---HHCC
Q ss_conf             9983872168999999599999718997799999999985798-08950788678850899998579979999---7459
Q gi|254781018|r  246 NIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLS---SLYG  321 (337)
Q Consensus       246 al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~---~~~~  321 (337)
T Consensus       208 ~l~~~d~~~lG~Lm~~~h~ll~~lgVS~peld~lv~~a~~~GalGAKltGaG---~GGc~iaL~~~d~~~~v~~al~~ag  284 (302)
T PRK03926        208 LVLSGDYVSIGELMNINQGLLDALGVSTKELSELVYAARTAGAFGAKITGAG---GGGCMVALTAPDKCREVATAIGIAG  284 (302)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCC---CCCEEEEEECCCCHHHHHHHHHHCC
T ss_conf             7765649999999999688787316898899999999996798288805898---7628999946131999999999769


Q ss_pred             CEEEEEEECCCCEEE
Q ss_conf             869999987997092
Q gi|254781018|r  322 YTCYKIKEDKNGTML  336 (337)
Q Consensus       322 ~~~~~~~~~~~G~~i  336 (337)
T Consensus       285 ~~~~~~~~~~~g~~~  299 (302)
T PRK03926        285 GKPMITKPTEEGLRI  299 (302)
T ss_pred             CEEEEEEECCCCEEE
T ss_conf             968995677982375