HHsearch alignment for GI: 254781018 and conserved domain: TIGR00549

>TIGR00549 mevalon_kin mevalonate kinase; InterPro: IPR006205 Mevalonate kinase (2.7.1.36 from EC) is well-characterised among the Eukaryotes, where it plays a role in the synthesis of isopentanyl pyrophosphate, a common intermediate for a number of pathways including cholesterol biosynthesis. It is also involved in mevalonate catabolism. Close homologs are found in the Archaea. A bacterial example is found in the Lyme disease spirochete Borrelia burgdorferi, but is not necessarily the same biosynthetic enzyme.; GO: 0004496 mevalonate kinase activity, 0005524 ATP binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=368.56  Aligned_cols=285  Identities=25%  Similarity=0.306  Sum_probs=217.3

Q ss_pred             CCCEEEEECCCEEECCCEEEEEEECCCEEEEEEE-------------------------CCCCE-EEE---EECCCCCCC
Q ss_conf             5817999744544079548998766727999998-------------------------48982-999---955766675
Q gi|254781018|r   15 APAKVILSGEYSSLYGASALAVAITFYLRALLTT-------------------------IEPSL-IRI---INSQTIEYS   65 (337)
Q Consensus        15 APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~-------------------------~~~~~-~~~---~s~~~~~~~   65 (337)
T Consensus         1 ApgK~IL~GEHAVVYG~PAiA~~i~~~~~~~~~~~~S~~~~~Le~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (345)
T TIGR00549         1 APGKIILFGEHAVVYGEPAIAAAIDLRTTVTVIELDSAVAFRLEALAKDIILTLEDLARNSDSILYSLSSKIESELGRGS   80 (345)
T ss_pred             CCCEEEEECCCEEECCCCCEEEEECCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
T ss_conf             97405762360011278504666336068998636732456665405644443387620254034442012110015676


Q ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf             32100123333433--21111122103347778889999987511566788---76999980554103898530378999
Q gi|254781018|r   66 FEACRLLGHQIDQR--HRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISC---GISLDLHSTIPIGSGFGSSSAIISAL  140 (337)
Q Consensus        66 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~i~i~s~iP~~~GLGSSaA~~va~  140 (337)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---~~~~~~~~~~~~~~p~~~~i~S~iP~g~GLGSSAAv~vA~  157 (345)
T TIGR00549        81 LDDAPQELDGLVSELVEPADKQLTPSLSESLSYIAAA---ALSKLSELNEPPKTPLEIEIESEIPPGRGLGSSAAVAVAL  157 (345)
T ss_pred             CCCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             4401376512244316655653038999999999999---9999750267554872799850536655563479999999


Q ss_pred             HHHHHHHHC---------CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECC---CCCCCCCCCCCEEEEE
Q ss_conf             999999818---------7754025899999986411577877345787653263024027---8520014788439997
Q gi|254781018|r  141 SLALSSITH---------QPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPP---QIIKNETLVGEWWAIN  208 (337)
Q Consensus       141 ~~al~~~~~---------~~~~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~---~~~~~~~~~~~~~~i~  208 (337)
T Consensus       158 ~~al~~~~g~~~n~~s~L~~~~-~~~~~~~a~~~E~~~HG~pSG~D~~~~~~g~~~~f~k~~~~~~~~~~~~~~~~~~i~  236 (345)
T TIGR00549       158 IRALADYFGIRSNDLSKLSELS-KEELAKLANEAEKIVHGKPSGIDTATSTYGGPVLFEKGEGVEETKLISLDALYLVIA  236 (345)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCEEEECCCCCCEEEEE
T ss_conf             9999987044668621024689-889999998877651799853122123448668987688873144027899608998


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             49714537999999997641206-----89998765489999998387-------2168999999599999718997799
Q gi|254781018|r  209 TGMPESSTGECVSFVEQHFSQSS-----IWSEFNAVTNEMMENIQKKD-------AEKTYKSVRVNQSLLESIGVVPETV  276 (337)
Q Consensus       209 ~~~~~~st~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~al~~~d-------~~~l~~~~~~~~~ll~~l~vs~~~l  276 (337)
T Consensus       237 dtg~~~~T~~~V~~V~~l~~~~p~~~~~~~~~~g~l~~~a~~a~~~~d~~~~~ek~~~lg~lm~~nq~lL~~lGVS~~~l  316 (345)
T TIGR00549       237 DTGVSGSTKEAVAKVRQLLERFPELIDAIMDAIGELTKEAKAALEDGDEVEDSEKVESLGELMNINQGLLKALGVSTPKL  316 (345)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             34877748999999999875171689999999999999999999718831035589999999999998888707985799


Q ss_pred             HHHHHHHHHCCC-EEEECCCCCCCCCEEEEE
Q ss_conf             999999985798-089507886788508999
Q gi|254781018|r  277 GKFIRCIENNGG-SAKIAGAGSIRGEKAGLV  306 (337)
Q Consensus       277 ~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~  306 (337)
T Consensus       317 d~l~~~~~~~GAlGaKlTGaG---~GGc~ia  344 (345)
T TIGR00549       317 DQLVELARKAGALGAKLTGAG---GGGCMIA  344 (345)
T ss_pred             HHHHHHHHHCCCCEEEECCCC---CCCEEEE
T ss_conf             999999986797463101577---7653653