HHsearch alignment for GI: 254781018 and conserved domain: TIGR00549
>TIGR00549 mevalon_kin mevalonate kinase; InterPro: IPR006205 Mevalonate kinase (2.7.1.36 from EC) is well-characterised among the Eukaryotes, where it plays a role in the synthesis of isopentanyl pyrophosphate, a common intermediate for a number of pathways including cholesterol biosynthesis. It is also involved in mevalonate catabolism. Close homologs are found in the Archaea. A bacterial example is found in the Lyme disease spirochete Borrelia burgdorferi, but is not necessarily the same biosynthetic enzyme.; GO: 0004496 mevalonate kinase activity, 0005524 ATP binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=368.56 Aligned_cols=285 Identities=25% Similarity=0.306 Sum_probs=217.3
Q ss_pred CCCEEEEECCCEEECCCEEEEEEECCCEEEEEEE-------------------------CCCCE-EEE---EECCCCCCC
Q ss_conf 5817999744544079548998766727999998-------------------------48982-999---955766675
Q gi|254781018|r 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTT-------------------------IEPSL-IRI---INSQTIEYS 65 (337)
Q Consensus 15 APGKi~L~GEh~v~~G~~ai~~aI~~~~~v~i~~-------------------------~~~~~-~~~---~s~~~~~~~ 65 (337)
T Consensus 1 ApgK~IL~GEHAVVYG~PAiA~~i~~~~~~~~~~~~S~~~~~Le~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (345)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAAIDLRTTVTVIELDSAVAFRLEALAKDIILTLEDLARNSDSILYSLSSKIESELGRGS 80 (345)
T ss_pred CCCEEEEECCCEEECCCCCEEEEECCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 97405762360011278504666336068998636732456665405644443387620254034442012110015676
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC---CEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 32100123333433--21111122103347778889999987511566788---76999980554103898530378999
Q gi|254781018|r 66 FEACRLLGHQIDQR--HRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISC---GISLDLHSTIPIGSGFGSSSAIISAL 140 (337)
Q Consensus 66 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~i~i~s~iP~~~GLGSSaA~~va~ 140 (337)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~---~~~~~~~~~~~~~~p~~~~i~S~iP~g~GLGSSAAv~vA~ 157 (345)
T TIGR00549 81 LDDAPQELDGLVSELVEPADKQLTPSLSESLSYIAAA---ALSKLSELNEPPKTPLEIEIESEIPPGRGLGSSAAVAVAL 157 (345)
T ss_pred CCCHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 4401376512244316655653038999999999999---9999750267554872799850536655563479999999
Q ss_pred HHHHHHHHC---------CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECC---CCCCCCCCCCCEEEEE
Q ss_conf 999999818---------7754025899999986411577877345787653263024027---8520014788439997
Q gi|254781018|r 141 SLALSSITH---------QPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPP---QIIKNETLVGEWWAIN 208 (337)
Q Consensus 141 ~~al~~~~~---------~~~~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~---~~~~~~~~~~~~~~i~ 208 (337)
T Consensus 158 ~~al~~~~g~~~n~~s~L~~~~-~~~~~~~a~~~E~~~HG~pSG~D~~~~~~g~~~~f~k~~~~~~~~~~~~~~~~~~i~ 236 (345)
T TIGR00549 158 IRALADYFGIRSNDLSKLSELS-KEELAKLANEAEKIVHGKPSGIDTATSTYGGPVLFEKGEGVEETKLISLDALYLVIA 236 (345)
T ss_pred HHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCEEEECCCCCCEEEEE
T ss_conf 9999987044668621024689-889999998877651799853122123448668987688873144027899608998
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 49714537999999997641206-----89998765489999998387-------2168999999599999718997799
Q gi|254781018|r 209 TGMPESSTGECVSFVEQHFSQSS-----IWSEFNAVTNEMMENIQKKD-------AEKTYKSVRVNQSLLESIGVVPETV 276 (337)
Q Consensus 209 ~~~~~~st~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~al~~~d-------~~~l~~~~~~~~~ll~~l~vs~~~l 276 (337)
T Consensus 237 dtg~~~~T~~~V~~V~~l~~~~p~~~~~~~~~~g~l~~~a~~a~~~~d~~~~~ek~~~lg~lm~~nq~lL~~lGVS~~~l 316 (345)
T TIGR00549 237 DTGVSGSTKEAVAKVRQLLERFPELIDAIMDAIGELTKEAKAALEDGDEVEDSEKVESLGELMNINQGLLKALGVSTPKL 316 (345)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 34877748999999999875171689999999999999999999718831035589999999999998888707985799
Q ss_pred HHHHHHHHHCCC-EEEECCCCCCCCCEEEEE
Q ss_conf 999999985798-089507886788508999
Q gi|254781018|r 277 GKFIRCIENNGG-SAKIAGAGSIRGEKAGLV 306 (337)
Q Consensus 277 ~~l~~~~~~~g~-~ak~sGAG~~~Gg~~~~~ 306 (337)
T Consensus 317 d~l~~~~~~~GAlGaKlTGaG---~GGc~ia 344 (345)
T TIGR00549 317 DQLVELARKAGALGAKLTGAG---GGGCMIA 344 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCC---CCCEEEE
T ss_conf 999999986797463101577---7653653