HHsearch results for GI: 254781018 and protein with PDBid: 1fi4_A

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.61  E-value=9.2e-12  Score=91.51  Aligned_cols=270  Identities=14%  Similarity=0.084  Sum_probs=150.1

Q ss_pred             CEEEECCCEEEEECCCEEECC----------CEEEEEEEC---CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             089985817999744544079----------548998766---7279999984898299995576667532100123333
Q gi|254781018|r   10 HAHSIAPAKVILSGEYSSLYG----------ASALAVAIT---FYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQI   76 (337)
Q Consensus        10 ~~~~~APGKi~L~GEh~v~~G----------~~ai~~aI~---~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~   76 (337)
                      .+++.||-.|=|+    -|||          .+.|++.++   .+|+.++...++..     .          +..+  +
T Consensus        25 ~~t~~AP~NIAlI----KYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~-----~----------d~~~--l   83 (416)
T 1fi4_A           25 TASVTAPVNIATL----KYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFE-----R----------DTLW--L   83 (416)
T ss_dssp             EEEEEECCEEEEE----CCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCC-----S----------CBCT--T
T ss_pred             EEEEEEECCEEEE----ECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCC-----C----------CEEE--E
T ss_conf             9999753433264----0157668767899998147893699987789999788887-----7----------8799--9


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC----CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             43321111122103347778889999987511----56678876999980554103898530378999999999818775
Q gi|254781018|r   77 DQRHRDFIAKKIPITSVLTHPNDLILYIFNRH----LPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPF  152 (337)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~  152 (337)
                      +......  .......++.....+ .......    .......++|...+++|.++||+||||..+|++.+++.+++.++
T Consensus        84 NG~~~~~--~~~r~~~~l~~ir~l-~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l~~~~l  160 (416)
T 1fi4_A           84 NGEPHSI--DNERTQNCLRDLRQL-RKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQ  160 (416)
T ss_dssp             TCCBSSS--SSSSHHHHHHHHHHH-HHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred             CCEECCC--CCHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9986576--308899999999999-9875401224653346228999956884224688899999999999999856778


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC------CCC-----CCCCCC--E-EEEECC-CCCCCHH
Q ss_conf             402589999998641157787734578765326302402785------200-----147884--3-999749-7145379
Q gi|254781018|r  153 CNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI------IKN-----ETLVGE--W-WAINTG-MPESSTG  217 (337)
Q Consensus       153 ~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~------~~~-----~~~~~~--~-~~i~~~-~~~~st~  217 (337)
                      + .+++..+|+..+        | ..+-|+|||++.....+.      ...     ...+..  . +++... +..+||.
T Consensus       161 ~-~~elS~lAR~GS--------G-SAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~  230 (416)
T 1fi4_A          161 S-TSEISRIARKGS--------G-SACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQ  230 (416)
T ss_dssp             C-HHHHHHHHHHHH--------G-GGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHH
T ss_pred             C-HHHHHHHHHHCC--------C-CHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf             8-899999986106--------3-44556408877843788877876347871565566440038998346655565631


Q ss_pred             HHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHH---HHHHH
Q ss_conf             9999999764120689-998765489999998387216899999959999971--------89977999999---99985
Q gi|254781018|r  218 ECVSFVEQHFSQSSIW-SEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI--------GVVPETVGKFI---RCIEN  285 (337)
Q Consensus       218 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l--------~vs~~~l~~l~---~~~~~  285 (337)
                      .+...++........+ +...+...++..|++++|++.+++++..+-..+..+        -.-+|.-.+++   +..++
T Consensus       231 gm~~~v~tS~~~~~~~~~~a~~~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~  310 (416)
T 1fi4_A          231 GMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQ  310 (416)
T ss_dssp             HHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             01115455757899998750668999999998389999999999989999999863699847568427999999999998


Q ss_pred             --CC-CEEEECCCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf             --79-8089507886788508999985799799997
Q gi|254781018|r  286 --NG-GSAKIAGAGSIRGEKAGLVLVGGYNPEKLSS  318 (337)
Q Consensus       286 --~g-~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~  318 (337)
                        .+ ..+-..+||+     -..++....+.+++..
T Consensus       311 ~~~~~~~~yT~DAGP-----Nv~il~~~~~~~~v~~  341 (416)
T 1fi4_A          311 FYGETIVAYTFDAGP-----NAVLYYLAENESKLFA  341 (416)
T ss_dssp             HHTSCCEEEEECSSS-----CEEEEEEGGGHHHHHH
T ss_pred             HCCCCCEEEEECCCC-----CEEEEECHHHHHHHHH
T ss_conf             638972899967887-----7799974766999999