HHsearch results for GI: 254781018 and protein with PDBid: 1fi4_A
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, cholesterol biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.61 E-value=9.2e-12 Score=91.51 Aligned_cols=270 Identities=14% Similarity=0.084 Sum_probs=150.1
Q ss_pred CEEEECCCEEEEECCCEEECC----------CEEEEEEEC---CCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 089985817999744544079----------548998766---7279999984898299995576667532100123333
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYG----------ASALAVAIT---FYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQI 76 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G----------~~ai~~aI~---~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 76 (337)
.+++.||-.|=|+ -||| .+.|++.++ .+|+.++...++.. . +..+ +
T Consensus 25 ~~t~~AP~NIAlI----KYWGKrd~~l~lP~n~SiS~TL~~d~~~T~Ttv~~s~~~~-----~----------d~~~--l 83 (416)
T 1fi4_A 25 TASVTAPVNIATL----KYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFE-----R----------DTLW--L 83 (416)
T ss_dssp EEEEEECCEEEEE----CCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCC-----S----------CBCT--T
T ss_pred EEEEEEECCEEEE----ECCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCC-----C----------CEEE--E
T ss_conf 9999753433264----0157668767899998147893699987789999788887-----7----------8799--9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC----CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 43321111122103347778889999987511----56678876999980554103898530378999999999818775
Q gi|254781018|r 77 DQRHRDFIAKKIPITSVLTHPNDLILYIFNRH----LPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPF 152 (337)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~ 152 (337)
+...... .......++.....+ ....... .......++|...+++|.++||+||||..+|++.+++.+++.++
T Consensus 84 NG~~~~~--~~~r~~~~l~~ir~l-~~~~~~~~~~~~~~~~~~l~I~S~NnfPtaaGLASSASg~AAl~~al~~l~~~~l 160 (416)
T 1fi4_A 84 NGEPHSI--DNERTQNCLRDLRQL-RKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQ 160 (416)
T ss_dssp TCCBSSS--SSSSHHHHHHHHHHH-HHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCEECCC--CCHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9986576--308899999999999-9875401224653346228999956884224688899999999999999856778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC------CCC-----CCCCCC--E-EEEECC-CCCCCHH
Q ss_conf 402589999998641157787734578765326302402785------200-----147884--3-999749-7145379
Q gi|254781018|r 153 CNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI------IKN-----ETLVGE--W-WAINTG-MPESSTG 217 (337)
Q Consensus 153 ~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~------~~~-----~~~~~~--~-~~i~~~-~~~~st~ 217 (337)
+ .+++..+|+..+ | ..+-|+|||++.....+. ... ...+.. . +++... +..+||.
T Consensus 161 ~-~~elS~lAR~GS--------G-SAcRSi~GG~v~W~~g~~~dgsds~A~~v~~~~~~p~l~~iilvv~~~~K~vsST~ 230 (416)
T 1fi4_A 161 S-TSEISRIARKGS--------G-SACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQ 230 (416)
T ss_dssp C-HHHHHHHHHHHH--------G-GGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHH
T ss_pred C-HHHHHHHHHHCC--------C-CHHHHHHCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 8-899999986106--------3-44556408877843788877876347871565566440038998346655565631
Q ss_pred HHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHH---HHHHH
Q ss_conf 9999999764120689-998765489999998387216899999959999971--------89977999999---99985
Q gi|254781018|r 218 ECVSFVEQHFSQSSIW-SEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI--------GVVPETVGKFI---RCIEN 285 (337)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l--------~vs~~~l~~l~---~~~~~ 285 (337)
.+...++........+ +...+...++..|++++|++.+++++..+-..+..+ -.-+|.-.+++ +..++
T Consensus 231 gm~~~v~tS~~~~~~~~~~a~~~~~~m~~Ai~~~Df~~~~ei~e~ds~~mHa~~l~s~Ppi~Y~~~~s~~ii~~v~~~r~ 310 (416)
T 1fi4_A 231 GMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQ 310 (416)
T ss_dssp HHHHHHHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 01115455757899998750668999999998389999999999989999999863699847568427999999999998
Q ss_pred --CC-CEEEECCCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf --79-8089507886788508999985799799997
Q gi|254781018|r 286 --NG-GSAKIAGAGSIRGEKAGLVLVGGYNPEKLSS 318 (337)
Q Consensus 286 --~g-~~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~ 318 (337)
.+ ..+-..+||+ -..++....+.+++..
T Consensus 311 ~~~~~~~~yT~DAGP-----Nv~il~~~~~~~~v~~ 341 (416)
T 1fi4_A 311 FYGETIVAYTFDAGP-----NAVLYYLAENESKLFA 341 (416)
T ss_dssp HHTSCCEEEEECSSS-----CEEEEEEGGGHHHHHH
T ss_pred HCCCCCEEEEECCCC-----CEEEEECHHHHHHHHH
T ss_conf 638972899967887-----7799974766999999