HHsearch results for GI: 254781018 and protein with PDBid: 2hke_A
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.33 E-value=2.6e-08 Score=69.76 Aligned_cols=260 Identities=12% Similarity=0.067 Sum_probs=140.5
Q ss_pred CEEEECCCEEEEECCCEEECCC------------EEEEEEEC---CCEEEEEEECCCCE--EEEEECCCCCCCCCCCCCC
Q ss_conf 0899858179997445440795------------48998766---72799999848982--9999557666753210012
Q gi|254781018|r 10 HAHSIAPAKVILSGEYSSLYGA------------SALAVAIT---FYLRALLTTIEPSL--IRIINSQTIEYSFEACRLL 72 (337)
Q Consensus 10 ~~~~~APGKi~L~GEh~v~~G~------------~ai~~aI~---~~~~v~i~~~~~~~--~~~~s~~~~~~~~~~~~~~ 72 (337)
-+++.||-.|=|+ -|+|. +.|++.++ .+++.++..+++.. ..+.+
T Consensus 5 ~vt~~AP~NIAlI----KYWGKrD~~e~L~lP~N~SiS~TL~~~~~~T~Ttv~~~~~~~~D~~~lN-------------- 66 (380)
T 2hke_A 5 CVTVEAPINIAFI----KYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDIETDTLRLN-------------- 66 (380)
T ss_dssp EEEEEECCEEEEE----CCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSCSSCEEEET--------------
T ss_pred EEEEEEECEEEEE----ECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEC--------------
T ss_conf 1999820513465----3267778886777899980579955999768999998888877579999--------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 3333433211111221033477788899999875115-667887699998055410389853037899999999981877
Q gi|254781018|r 73 GHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHL-PHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQP 151 (337)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~ 151 (337)
..........+...++..+..... ......++|....++|.++||+||||-.+|++.++..+++..
T Consensus 67 -------------G~~~~~~~~~ri~~~l~~ir~~~~~~~~~~~~~I~S~NnFPtaAGLASSAsg~AALa~al~~~~~~~ 133 (380)
T 2hke_A 67 -------------GTEVDVGKTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST 133 (380)
T ss_dssp -------------TEEECGGGCHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred -------------CEECCCCCCHHHHHHHHHHHHHCHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf -------------9778742016899999999985614304751699975788205657877899999999999874254
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCC------CCCC---C--C-CCE--EEEEC-CCCCCCH
Q ss_conf 54025899999986411577877345787653263024027852------0014---7--8-843--99974-9714537
Q gi|254781018|r 152 FCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQII------KNET---L--V-GEW--WAINT-GMPESST 216 (337)
Q Consensus 152 ~~~~~~~~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~~------~~~~---~--~-~~~--~~i~~-~~~~~st 216 (337)
. .+..+|+.. .|| -.-|+|||++.....+.. .... . + ... ++|.. .+..+||
T Consensus 134 ~----~lS~lAR~G------SGS---AcRSi~GGfv~W~~g~~~dgsds~A~qi~~~~~w~~l~~~ilvvs~~~K~vsSt 200 (380)
T 2hke_A 134 T----NVSMLARLG------SGS---ACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSST 200 (380)
T ss_dssp S----CHHHHHHHH------CGG---GGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHH
T ss_pred H----HHHHHHHHH------CCC---CHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCH
T ss_conf 4----578998752------765---013303884572268999960000352366445511206999943776777752
Q ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHH--
Q ss_conf 999999997641206-89998765489999998387216899999959999971--------8997799999999985--
Q gi|254781018|r 217 GECVSFVEQHFSQSS-IWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESI--------GVVPETVGKFIRCIEN-- 285 (337)
Q Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l--------~vs~~~l~~l~~~~~~-- 285 (337)
..+...++...-... ..+...+...++.++++++|++.|+++.-.+-..+..+ -.-+|.-..+++..++
T Consensus 201 ~GM~~~v~TSpl~~~r~~~~~~~~~~~~~~Ai~~~Df~~~~ei~e~ds~~mHA~~l~s~Ppi~Yl~~~S~~ii~~V~~~r 280 (380)
T 2hke_A 201 KGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYN 280 (380)
T ss_dssp HHHHHHHHHCTTHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 88999988391089999986377899999999839999999999999999999985379987997846999999999999
Q ss_pred ---CCC-EEEECCCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf ---798-089507886788508999985799799997
Q gi|254781018|r 286 ---NGG-SAKIAGAGSIRGEKAGLVLVGGYNPEKLSS 318 (337)
Q Consensus 286 ---~g~-~ak~sGAG~~~Gg~~~~~l~~~~~~~~~~~ 318 (337)
.+. .+--.=||+ -..++....+.+++.+
T Consensus 281 ~~~~~~~v~yT~DAGP-----Nv~ll~~~~~~~~v~~ 312 (380)
T 2hke_A 281 AKKGRTALAYTFDAGA-----NCFLFVLKEDLPEAVA 312 (380)
T ss_dssp HHHTSCCEEEECCSSS-----CEEEEEEGGGHHHHHH
T ss_pred HHCCCCEEEEEECCCC-----CEEEEECCCCHHHHHH
T ss_conf 7468941999978898-----7799972512999999