HHsearch results for GI: 254781018 and protein with PDBid: 2v8p_A
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.90 E-value=2.2e-21 Score=152.16 Aligned_cols=258 Identities=18% Similarity=0.222 Sum_probs=168.3
Q ss_pred CCCEEEECCCEEEEE---------CCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 960899858179997---------44544079548998766727999998489829999557666753210012333343
Q gi|254781018|r 8 TPHAHSIAPAKVILS---------GEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQ 78 (337)
Q Consensus 8 ~p~~~~~APGKi~L~---------GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 78 (337)
++-..++||+||||+ |.|-+ ..+..+|+++-++.+++.. ..+..... .
T Consensus 2 ~~mi~~~apAKiNL~L~i~~kr~dGyH~i----~s~~~~i~l~D~i~i~~~~---~~~~~~~~---------~------- 58 (271)
T 2v8p_A 2 SHMIKVLSPAKINLGLWVLGRLPSGYHEI----LTLYQEIPFYDEIYIREGV---LRVETNIG---------I------- 58 (271)
T ss_dssp CCCEEEEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEESS---CEEEESSC---------C-------
T ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECC---CEEECCCC---------C-------
T ss_conf 95199984168975455178589997725----7899992687399999687---07768889---------9-------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 32111112210334777888999998751156678876999980554103898530378999999999818775402589
Q gi|254781018|r 79 RHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKL 158 (337)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~ 158 (337)
....+...... ..+.... ....|+++.++++||+++|||||||.++|++.+++++++.+++. +++
T Consensus 59 -----~~~~Nli~ka~--------~~~~~~~-~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l~~~~ls~-~el 123 (271)
T 2v8p_A 59 -----PQEENLVYKGL--------REFERIT-GIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSE-EEL 123 (271)
T ss_dssp -----CTTTCHHHHHH--------HHHHHHH-CCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCH-HHH
T ss_pred -----CCCHHHHHHHH--------HHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHH
T ss_conf -----96311999999--------9977975-99987489997699887877743278999999999850677423-667
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999998641157787734578765326302402785--200147884399974971453799999999764120689998
Q gi|254781018|r 159 IAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEF 236 (337)
Q Consensus 159 ~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~ 236 (337)
.+++..+ |.|+..+.+|+......... ..++..+..++++..+....+|+++++.++.......
T Consensus 124 ~~la~~i---------g~dvp~fl~g~~~~~~g~Ge~i~~~~~~~~~~~vlv~P~~~~sT~~a~~~l~~~~~~~~----- 189 (271)
T 2v8p_A 124 RELVGSI---------SADAPFFLLGKSAIGRGKGEVLEPVETEISGKITLVIPQVSSSTGRVYSSLREEHFVTP----- 189 (271)
T ss_dssp HHHHHHH---------CTTTGGGGTCSEEEEETTTTEEEECCCCCCSEEEEEECSSCCCHHHHHHTCCTTSCCCH-----
T ss_pred HHHHCCC---------CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-----
T ss_conf 7653024---------78878433687600048853799976157752799815657751789976513303452-----
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEE-CCCHHH
Q ss_conf 7654899999983872168999999599999718997799999999985798089507886788508999985-799799
Q gi|254781018|r 237 NAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVG-GYNPEK 315 (337)
Q Consensus 237 ~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~-~~~~~~ 315 (337)
........++..++++.+...+. ....++ .|+++++.+.++..+.++.|||||++ .|.+.. ..+.+.
T Consensus 190 -~~~~~~~~~l~~~~~~~~~n~l~---~~~~~l---~P~i~~i~~~l~~~~~~~~lSGSGst-----vfal~~~~~~~~~ 257 (271)
T 2v8p_A 190 -EYAEEKIQRIISGEVEEIENVLG---DIAREL---YPEINEVYRFVEYLGFKPFVSGSGST-----VYFFGGASEELKK 257 (271)
T ss_dssp -HHHHHHHHHHHTTCGGGCCBHHH---HHHHHH---CHHHHHHHHHHHHTTCCCEECTTSSC-----EEESSCCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---CHHHHHHHHHHHHCCCCEEEECCCHH-----HEEEECCHHHHHH
T ss_conf -00588999887531899998888---899986---90999999999838998899784432-----1689899999999
Q ss_pred HHHHCCCEEEEEEE
Q ss_conf 99745986999998
Q gi|254781018|r 316 LSSLYGYTCYKIKE 329 (337)
Q Consensus 316 ~~~~~~~~~~~~~~ 329 (337)
+.+..+|+++++++
T Consensus 258 a~k~~~w~v~~~~l 271 (271)
T 2v8p_A 258 AAKMRGWKVVELEL 271 (271)
T ss_dssp HHHHHTCEEEEEEC
T ss_pred HHHCCCCEEEEEEC
T ss_conf 87407998999889