HHsearch results for GI: 254781018 and protein with PDBid: 2v8p_A

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.90  E-value=2.2e-21  Score=152.16  Aligned_cols=258  Identities=18%  Similarity=0.222  Sum_probs=168.3

Q ss_pred             CCCEEEECCCEEEEE---------CCCEEECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             960899858179997---------44544079548998766727999998489829999557666753210012333343
Q gi|254781018|r    8 TPHAHSIAPAKVILS---------GEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQ   78 (337)
Q Consensus         8 ~p~~~~~APGKi~L~---------GEh~v~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   78 (337)
                      ++-..++||+||||+         |.|-+    ..+..+|+++-++.+++..   ..+.....         .       
T Consensus         2 ~~mi~~~apAKiNL~L~i~~kr~dGyH~i----~s~~~~i~l~D~i~i~~~~---~~~~~~~~---------~-------   58 (271)
T 2v8p_A            2 SHMIKVLSPAKINLGLWVLGRLPSGYHEI----LTLYQEIPFYDEIYIREGV---LRVETNIG---------I-------   58 (271)
T ss_dssp             CCCEEEEEEEEEEEEEEEEEECTTSCEEE----EEEEEEEEEEEEEEEEESS---CEEEESSC---------C-------
T ss_pred             CCEEEEEEEEEEEEEEEECCCCCCCCCEE----EEEEEEECCCCEEEEEECC---CEEECCCC---------C-------
T ss_conf             95199984168975455178589997725----7899992687399999687---07768889---------9-------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             32111112210334777888999998751156678876999980554103898530378999999999818775402589
Q gi|254781018|r   79 RHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKL  158 (337)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~  158 (337)
                           ....+......        ..+.... ....|+++.++++||+++|||||||.++|++.+++++++.+++. +++
T Consensus        59 -----~~~~Nli~ka~--------~~~~~~~-~~~~~~~I~i~K~IP~~~GLGggSs~aaa~l~~ln~l~~~~ls~-~el  123 (271)
T 2v8p_A           59 -----PQEENLVYKGL--------REFERIT-GIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSE-EEL  123 (271)
T ss_dssp             -----CTTTCHHHHHH--------HHHHHHH-CCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCH-HHH
T ss_pred             -----CCCHHHHHHHH--------HHHHHHH-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH-HHH
T ss_conf             -----96311999999--------9977975-99987489997699887877743278999999999850677423-667


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCC--CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999998641157787734578765326302402785--200147884399974971453799999999764120689998
Q gi|254781018|r  159 IAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQI--IKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEF  236 (337)
Q Consensus       159 ~~~a~~~e~~~~~~~sg~D~~~~~~gg~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~  236 (337)
                      .+++..+         |.|+..+.+|+.........  ..++..+..++++..+....+|+++++.++.......     
T Consensus       124 ~~la~~i---------g~dvp~fl~g~~~~~~g~Ge~i~~~~~~~~~~~vlv~P~~~~sT~~a~~~l~~~~~~~~-----  189 (271)
T 2v8p_A          124 RELVGSI---------SADAPFFLLGKSAIGRGKGEVLEPVETEISGKITLVIPQVSSSTGRVYSSLREEHFVTP-----  189 (271)
T ss_dssp             HHHHHHH---------CTTTGGGGTCSEEEEETTTTEEEECCCCCCSEEEEEECSSCCCHHHHHHTCCTTSCCCH-----
T ss_pred             HHHHCCC---------CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC-----
T ss_conf             7653024---------78878433687600048853799976157752799815657751789976513303452-----


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEE-CCCHHH
Q ss_conf             7654899999983872168999999599999718997799999999985798089507886788508999985-799799
Q gi|254781018|r  237 NAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVG-GYNPEK  315 (337)
Q Consensus       237 ~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~~Gg~~~~~l~~-~~~~~~  315 (337)
                       ........++..++++.+...+.   ....++   .|+++++.+.++..+.++.|||||++     .|.+.. ..+.+.
T Consensus       190 -~~~~~~~~~l~~~~~~~~~n~l~---~~~~~l---~P~i~~i~~~l~~~~~~~~lSGSGst-----vfal~~~~~~~~~  257 (271)
T 2v8p_A          190 -EYAEEKIQRIISGEVEEIENVLG---DIAREL---YPEINEVYRFVEYLGFKPFVSGSGST-----VYFFGGASEELKK  257 (271)
T ss_dssp             -HHHHHHHHHHHTTCGGGCCBHHH---HHHHHH---CHHHHHHHHHHHHTTCCCEECTTSSC-----EEESSCCCHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---CHHHHHHHHHHHHCCCCEEEECCCHH-----HEEEECCHHHHHH
T ss_conf             -00588999887531899998888---899986---90999999999838998899784432-----1689899999999


Q ss_pred             HHHHCCCEEEEEEE
Q ss_conf             99745986999998
Q gi|254781018|r  316 LSSLYGYTCYKIKE  329 (337)
Q Consensus       316 ~~~~~~~~~~~~~~  329 (337)
                      +.+..+|+++++++
T Consensus       258 a~k~~~w~v~~~~l  271 (271)
T 2v8p_A          258 AAKMRGWKVVELEL  271 (271)
T ss_dssp             HHHHHTCEEEEEEC
T ss_pred             HHHCCCCEEEEEEC
T ss_conf             87407998999889