HHsearch results for GI: 254781018 and protein with PDBid: 2ww4_A
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.84 E-value=4.1e-19 Score=137.83 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=142.4
Q ss_pred CCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58179997----44544-07954899876672799999848982999955766675321001233334332111112210
Q gi|254781018|r 15 APAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP 89 (337)
Q Consensus 15 APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
||+||+|+ |...| ||.-..+...|+++-++++++.++..+.+...... . ....+.
T Consensus 7 aPAKiNL~L~V~~kr~dGyH~l~s~~~~i~L~D~I~i~~~~~~~i~i~~~~~~-------------~-------~~~~n~ 66 (283)
T 2ww4_A 7 SPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEG-------------V-------EHEDNL 66 (283)
T ss_dssp EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCBTT-------------B-------CGGGSH
T ss_pred CCCEEECCEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEECCCCC-------------C-------CCCCCH
T ss_conf 70237066310887999975036788970788599999989998899707765-------------7-------731016
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 33477788899999875115667887699998055410389853037899999999981877540258999999864115
Q gi|254781018|r 90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ 169 (337)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~ 169 (337)
....... +..............|+++++.++||+++|||||||.++|++.+++++++.+++. +++.+++..+
T Consensus 67 ~~ka~~~---l~~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGggSs~aAa~l~~ln~l~~~~l~~-~~l~~~a~~i---- 138 (283)
T 2ww4_A 67 IVRAARL---LMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSM-DELAEMGLTL---- 138 (283)
T ss_dssp HHHHHHH---HHHHHHHTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHTT----
T ss_pred HHHHHHH---HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC----
T ss_conf 8999999---9998655431277897699997489877667757179999999999971788308-9999987321----
Q ss_pred CCCCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77877345787653263024027-85200147884399974971453799999999764120689998765489999998
Q gi|254781018|r 170 HGKTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENIQ 248 (337)
Q Consensus 170 ~~~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~ 248 (337)
|.|+..+.+||....... +......++..++++..+....+|+++.+......... ....+.+.
T Consensus 139 -----gsDVp~~l~g~~a~~~g~Ge~i~~~~~~~~~~vlv~P~~~iST~~~~~~~~~~~~~~----------~~~~~~~~ 203 (283)
T 2ww4_A 139 -----GADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTP----------KRSIETLL 203 (283)
T ss_dssp -----CTTHHHHHHTBCEEEETTTTEEEECCCCCCEEEEECCSCCCCHHHHHTCTTSCCCCC----------CCCHHHHH
T ss_pred -----CCCCCCEECCCCEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCC----------CCCHHHHH
T ss_conf -----578743224861674389867640356543206744897877299997000133774----------01399999
Q ss_pred C----CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 3----8721689999995999997189977999999999857980895078867
Q gi|254781018|r 249 K----KDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSI 298 (337)
Q Consensus 249 ~----~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~ 298 (337)
. +|++.... +. .|++.++.+.+.++++ ..|||||++
T Consensus 204 ~~~~~Ndle~~~~---------~~----~p~i~~i~~~l~~~g~-~~mSGSGst 243 (283)
T 2ww4_A 204 KCEFSNDCEVIAR---------KR----FREVDAVLSWLLEYAP-SRLTGTGAC 243 (283)
T ss_dssp TSCCCBTTHHHHH---------HH----CHHHHHHHHHHHTTSC-EEECTTSSC
T ss_pred HHHHHCCHHHHHH---------HH----CHHHHHHHHHHHCCCC-EEEECHHHE
T ss_conf 7654131899999---------86----8699999999856698-686264011