HHsearch results for GI: 254781018 and protein with PDBid: 2ww4_A

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.84  E-value=4.1e-19  Score=137.83  Aligned_cols=227  Identities=15%  Similarity=0.176  Sum_probs=142.4

Q ss_pred             CCCEEEEE----CCCEE-ECCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             58179997----44544-07954899876672799999848982999955766675321001233334332111112210
Q gi|254781018|r   15 APAKVILS----GEYSS-LYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP   89 (337)
Q Consensus        15 APGKi~L~----GEh~v-~~G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (337)
                      ||+||+|+    |...| ||.-..+...|+++-++++++.++..+.+......             .       ....+.
T Consensus         7 aPAKiNL~L~V~~kr~dGyH~l~s~~~~i~L~D~I~i~~~~~~~i~i~~~~~~-------------~-------~~~~n~   66 (283)
T 2ww4_A            7 SPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEG-------------V-------EHEDNL   66 (283)
T ss_dssp             EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCBTT-------------B-------CGGGSH
T ss_pred             CCCEEECCEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEECCCCC-------------C-------CCCCCH
T ss_conf             70237066310887999975036788970788599999989998899707765-------------7-------731016


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             33477788899999875115667887699998055410389853037899999999981877540258999999864115
Q gi|254781018|r   90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ  169 (337)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~~  169 (337)
                      .......   +..............|+++++.++||+++|||||||.++|++.+++++++.+++. +++.+++..+    
T Consensus        67 ~~ka~~~---l~~~~~~~~~~~~~~~~~I~i~KnIP~gaGLGggSs~aAa~l~~ln~l~~~~l~~-~~l~~~a~~i----  138 (283)
T 2ww4_A           67 IVRAARL---LMKTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSM-DELAEMGLTL----  138 (283)
T ss_dssp             HHHHHHH---HHHHHHHTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHTT----
T ss_pred             HHHHHHH---HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHC----
T ss_conf             8999999---9998655431277897699997489877667757179999999999971788308-9999987321----


Q ss_pred             CCCCCCHHHHHHHHCCCEEEECC-CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             77877345787653263024027-85200147884399974971453799999999764120689998765489999998
Q gi|254781018|r  170 HGKTGIIDSTTIVMGGIIYINPP-QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENIQ  248 (337)
Q Consensus       170 ~~~~sg~D~~~~~~gg~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~  248 (337)
                           |.|+..+.+||....... +......++..++++..+....+|+++.+.........          ....+.+.
T Consensus       139 -----gsDVp~~l~g~~a~~~g~Ge~i~~~~~~~~~~vlv~P~~~iST~~~~~~~~~~~~~~----------~~~~~~~~  203 (283)
T 2ww4_A          139 -----GADVPVFVRGHAAFAEGVGEILTPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTP----------KRSIETLL  203 (283)
T ss_dssp             -----CTTHHHHHHTBCEEEETTTTEEEECCCCCCEEEEECCSCCCCHHHHHTCTTSCCCCC----------CCCHHHHH
T ss_pred             -----CCCCCCEECCCCEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCC----------CCCHHHHH
T ss_conf             -----578743224861674389867640356543206744897877299997000133774----------01399999


Q ss_pred             C----CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf             3----8721689999995999997189977999999999857980895078867
Q gi|254781018|r  249 K----KDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSI  298 (337)
Q Consensus       249 ~----~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l~~~~~~~g~~ak~sGAG~~  298 (337)
                      .    +|++....         +.    .|++.++.+.+.++++ ..|||||++
T Consensus       204 ~~~~~Ndle~~~~---------~~----~p~i~~i~~~l~~~g~-~~mSGSGst  243 (283)
T 2ww4_A          204 KCEFSNDCEVIAR---------KR----FREVDAVLSWLLEYAP-SRLTGTGAC  243 (283)
T ss_dssp             TSCCCBTTHHHHH---------HH----CHHHHHHHHHHHTTSC-EEECTTSSC
T ss_pred             HHHHHCCHHHHHH---------HH----CHHHHHHHHHHHCCCC-EEEECHHHE
T ss_conf             7654131899999---------86----8699999999856698-686264011