HHSEARCH alignment of GI: 254781018 and SCOP domain: d1h72c1

Alignment
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.74  E-value=2e-17  Score=125.61  Aligned_cols=152  Identities=19%  Similarity=0.243  Sum_probs=111.4

Q ss_pred             EEEECCCEE-EEECCCEEECCCEEEEEEECC-CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899858179-997445440795489987667-279999984898299995576667532100123333433211111221
Q gi|254781018|r   11 AHSIAPAKV-ILSGEYSSLYGASALAVAITF-YLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKI   88 (337)
Q Consensus        11 ~~~~APGKi-~L~GEh~v~~G~~ai~~aI~~-~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (337)
                      +.++||++. || |     -|..++.+|++. +.+++++++++..+.+......        ..   .+.       ..+
T Consensus         3 i~v~~Pas~aNl-g-----~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~~~--------i~---~~~-------~~n   58 (163)
T d1h72c1           3 VRVKAPCTSANL-G-----VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKN--------IP---TDP-------DKN   58 (163)
T ss_dssp             EEEEEEEEEECT-G-----GGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTT--------SC---CCT-------TTS
T ss_pred             EEEEEECCHHHC-C-----CCHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCC--------CC---CCH-------HHH
T ss_conf             999983307755-5-----46767651224786589999978982899744852--------57---754-------422


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf             03347778889999987511566788769999805541038985303789999999998187754025899999986411
Q gi|254781018|r   89 PITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERL  168 (337)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e~~  168 (337)
                      .       ....+.... .. ...+.|++++++++||+++|||||||.++|++.+++++++++++ ++++.++|...|..
T Consensus        59 ~-------~~~~~~~~~-~~-~~~~~~~~i~i~~~IP~gaGLGsSSA~a~a~l~aln~l~~~~ls-~~~l~~~A~~~e~~  128 (163)
T d1h72c1          59 V-------AGIVAKKMI-DD-FNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLD-KLKLVDYASYGELA  128 (163)
T ss_dssp             H-------HHHHHHHHH-HH-TTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHH-HH-CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHH
T ss_conf             4-------789988899-86-29987789999606413566575078899999999998379989-79999999998776


Q ss_pred             CCCCCCCHHHHHHHHCCCEEEECCCCCC
Q ss_conf             5778773457876532630240278520
Q gi|254781018|r  169 QHGKTGIIDSTTIVMGGIIYINPPQIIK  196 (337)
Q Consensus       169 ~~~~~sg~D~~~~~~gg~~~~~~~~~~~  196 (337)
                      ..+.++|.|.++|+|||++.....+...
T Consensus       129 ~~g~~~gddv~~~~~GG~~~~~~~~~~~  156 (163)
T d1h72c1         129 SSGAKHADNVAPAIFGGFTMVTNYEPLE  156 (163)
T ss_dssp             HHSSCCCTTHHHHHHCSEEEEEETTTTE
T ss_pred             HCCCCCCHHHHHHHHCCEEEEECCCCCC
T ss_conf             5378771476787609979992488870


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]