HHSEARCH alignment of GI: 254781018 and SCOP domain: d1k47a1

Alignment
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=99.97  E-value=1.2e-29  Score=202.69  Aligned_cols=163  Identities=17%  Similarity=0.111  Sum_probs=125.9

Q ss_pred             EEEECCCEEEEECCCEEEC-CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8998581799974454407-954899876672799999848982999955766675321001233334332111112210
Q gi|254781018|r   11 AHSIAPAKVILSGEYSSLY-GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGHQIDQRHRDFIAKKIP   89 (337)
Q Consensus        11 ~~~~APGKi~L~GEh~v~~-G~~ai~~aI~~~~~v~i~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (337)
                      ..++|||||+|+|||+|+| |++||++|||+|++++++++++..+...........      .   .+           .
T Consensus         2 i~v~apGK~iL~GE~aVv~~G~~ala~ai~~~~~v~v~~~~~~~i~~~~~~~~~~~------~---~~-----------~   61 (194)
T d1k47a1           2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDL------R---PN-----------P   61 (194)
T ss_dssp             EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEEEC------------------C-----------C
T ss_pred             EEEEECCEEEEEEEEEEECCCCEEEEEEEECEEEEEEEECCCCEEEEECCCCCCCC------C---CC-----------C
T ss_conf             69996848999966289608981999998045999999888862775203433112------5---67-----------4


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             334777888999998751156678876999980554103---89853037899999999981877540258999999864
Q gi|254781018|r   90 ITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGS---GFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIE  166 (337)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~s~iP~~~---GLGSSaA~~va~~~al~~~~~~~~~~~~~~~~~a~~~e  166 (337)
                      ...........+.... ...+....|+++.++|++|.++   |||||||++|+++.+++++++++++ ++++.++|..+|
T Consensus        62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~s~ip~~~~~~GLGSSAA~~va~~~al~~~~~~~ls-~~~i~~lA~~~e  139 (194)
T d1k47a1          62 DYSLIQETIALMGDFL-AVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVD-QNLLFKLTSAVL  139 (194)
T ss_dssp             CHHHHHHHHHHHHHHH-HHTTCCCCCEEEEEESHHHHSTTSSCSCHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-HHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHH
T ss_conf             1168899999999999-97089888718999746866667776442278999999999987077899-999999999999


Q ss_pred             HCCCCCCCCHHHHHHHHCCCEEEECCCCC
Q ss_conf             11577877345787653263024027852
Q gi|254781018|r  167 RLQHGKTGIIDSTTIVMGGIIYINPPQII  195 (337)
Q Consensus       167 ~~~~~~~sg~D~~~~~~gg~~~~~~~~~~  195 (337)
                      +..++++||+|+++|.|||++.|+..+..
T Consensus       140 ~~~~g~~SG~D~a~s~~GG~i~y~~~~~~  168 (194)
T d1k47a1         140 LKRGDNGSMGDLACIAAEDLVLYQSFDRQ  168 (194)
T ss_dssp             HHTTCCSCCHHHHHHHHTSCEEEECCCHH
T ss_pred             HHHCCCCCCCCHHHHHCCCEEEEEECCHH
T ss_conf             98635888533458874984999827804


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]