HHSEARCH alignment of GI: 254781018 and SCOP domain: d1oj4a2

Alignment
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=96.22  E-value=0.0031  Score=36.26  Aligned_cols=77  Identities=10%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             7884399974971453799999999764120-689998765489999998387216899999959999971899779999
Q gi|254781018|r  200 LVGEWWAINTGMPESSTGECVSFVEQHFSQS-SIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGK  278 (337)
Q Consensus       200 ~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~  278 (337)
                      +|+.|+++..+....||+++.+......... .....       ....-..+|++....         +.    .|++.+
T Consensus         2 Pp~~~~llv~P~~~vST~~if~~~~l~~~~~~~~~~~-------~~~~~~~Ndle~~~~---------~~----~P~I~~   61 (120)
T d1oj4a2           2 PPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIET-------LLKCEFSNDCEVIAR---------KR----FREVDA   61 (120)
T ss_dssp             CCCCEEEEECCSCCCCHHHHHTCTTSCCCCCCCCHHH-------HHHSCCCBTTHHHHH---------HH----CHHHHH
T ss_pred             CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCHHH-------HHHHHCCCCHHHHHH---------HH----CHHHHH
T ss_conf             9984899989999957699985837575524156999-------987750498699999---------86----989999


Q ss_pred             HHHHHHHCCCEEEECCCCC
Q ss_conf             9999985798089507886
Q gi|254781018|r  279 FIRCIENNGGSAKIAGAGS  297 (337)
Q Consensus       279 l~~~~~~~g~~ak~sGAG~  297 (337)
                      +.+.+.++|. ++|||+|+
T Consensus        62 ~~~~L~~~g~-~~MSGSGs   79 (120)
T d1oj4a2          62 VLSWLLEYAP-SRLTGTGA   79 (120)
T ss_dssp             HHHHHTTTSC-EEECTTSS
T ss_pred             HHHHHHHCCC-CEECCCCC
T ss_conf             9999865645-44617877


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]