HHSEARCH alignment of GI: 254781018 and SCOP domain: d1ueka2

Alignment
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=96.79  E-value=0.0015  Score=38.24  Aligned_cols=86  Identities=10%  Similarity=0.026  Sum_probs=51.8

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             78843999749714537999999997641206899987654899999983872168999999599999718997799999
Q gi|254781018|r  200 LVGEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKF  279 (337)
Q Consensus       200 ~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~~~~~~~i~~~~~~al~~~d~~~l~~~~~~~~~ll~~l~vs~~~l~~l  279 (337)
                      +|+.++++..+....+|+++++.+.........      ......+++..++...+...+.  ....+.    .|+++++
T Consensus         1 LPpl~~vlv~P~~~vST~~~y~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~Ndle--~~~~~~----~p~l~~~   68 (120)
T d1ueka2           1 LPPVPAVVFFPGLRVPTPLVYRAVRPEDFGPDL------PVEAILEALARGEEPPYWNSLE--GPAFRL----FPELKEV   68 (120)
T ss_dssp             CCCEEEEEEECCCCCCHHHHHHTCCGGGCCCCC------CHHHHHHHHHHTCCCSCCBTTH--HHHHHH----CTHHHHH
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHCHHCCCCCC------CHHHHHHHHHHHCHHHHHCCHH--HHHHHH----HHHHHHH
T ss_conf             999759998999986579999874532045567------8799999898406998748649--999999----8669999


Q ss_pred             HHHHHHCCC-EEEECCCCC
Q ss_conf             999985798-089507886
Q gi|254781018|r  280 IRCIENNGG-SAKIAGAGS  297 (337)
Q Consensus       280 ~~~~~~~g~-~ak~sGAG~  297 (337)
                      .+.+++.|+ .+.|||||+
T Consensus        69 ~~~l~~~g~~~~~mSGSGs   87 (120)
T d1ueka2          69 RGRMRALGLRGVLMSGSGS   87 (120)
T ss_dssp             HHHHHHTTCEEEEECTTSS
T ss_pred             HHHHHHHHHHHEEECCCCC
T ss_conf             9999972304256648887


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]